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Holmgren, Sverker
Publications (10 of 85) Show all publications
Neytcheva, M., Holmgren, S., Bull, J. R., Dorostkar, A., Kruchinina, A., Nikitenko, D., . . . Voevodin, V. (2018). Multidimensional performance and scalability analysis for diverse applications based on system monitoring data. In: Parallel Processing and Applied Mathematics: Part I. Paper presented at PPAM 2017 (pp. 417-431). Springer
Open this publication in new window or tab >>Multidimensional performance and scalability analysis for diverse applications based on system monitoring data
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2018 (English)In: Parallel Processing and Applied Mathematics: Part I, Springer, 2018, p. 417-431Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Springer, 2018
Series
Lecture Notes in Computer Science ; 10777
National Category
Computer Sciences Computational Mathematics
Identifiers
urn:nbn:se:uu:diva-331839 (URN)10.1007/978-3-319-78024-5_37 (DOI)000458563300037 ()978-3-319-78023-8 (ISBN)
Conference
PPAM 2017
Projects
eSSENCE
Available from: 2018-03-23 Created: 2017-10-18 Last updated: 2019-03-14Bibliographically approved
Mahjani, B., Toor, S., Nettelblad, C. & Holmgren, S. (2017). A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits. IEEE/ACM Transactions on Computational Biology & Bioinformatics, 14, 381-392
Open this publication in new window or tab >>A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits
2017 (English)In: IEEE/ACM Transactions on Computational Biology & Bioinformatics, ISSN 1545-5963, E-ISSN 1557-9964, Vol. 14, p. 381-392Article in journal (Refereed) Published
National Category
Computational Mathematics Bioinformatics and Systems Biology
Identifiers
urn:nbn:se:uu:diva-284372 (URN)10.1109/TCBB.2016.2527639 (DOI)000399013500017 ()26887003 (PubMedID)
Projects
eSSENCE
Available from: 2016-02-11 Created: 2016-04-18 Last updated: 2018-09-18Bibliographically approved
Mahjani, B., Toor, S., Nettelblad, C. & Holmgren, S. (2016). QTL as a service: PruneDIRECT for multi-dimensional QTL scans in cloud settings. Bioinformatics
Open this publication in new window or tab >>QTL as a service: PruneDIRECT for multi-dimensional QTL scans in cloud settings
2016 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811Article in journal (Other academic) Submitted
National Category
Bioinformatics and Systems Biology Software Engineering
Identifiers
urn:nbn:se:uu:diva-284376 (URN)
Projects
eSSENCE
Available from: 2016-04-18 Created: 2016-04-18 Last updated: 2018-01-10Bibliographically approved
Holm, M., Engblom, S., Goude, A. & Holmgren, S. (2014). Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU and GPU systems. SIAM Journal on Scientific Computing, 36, C376-C399
Open this publication in new window or tab >>Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU and GPU systems
2014 (English)In: SIAM Journal on Scientific Computing, ISSN 1064-8275, E-ISSN 1095-7197, Vol. 36, p. C376-C399Article in journal (Refereed) Published
National Category
Computer Sciences Computational Mathematics Energy Engineering
Identifiers
urn:nbn:se:uu:diva-200240 (URN)10.1137/130943595 (DOI)000344743800040 ()
Projects
eSSENCEUPMARC
Available from: 2014-08-29 Created: 2013-05-23 Last updated: 2018-11-12Bibliographically approved
Källén, M., Holmgren, S. & Hvannberg, E. þ. (2014). Impact of code refactoring using object-oriented methodology on a scientific computing application. In: Proc. 14th International Working Conference on Source Code Analysis and Manipulation: . Paper presented at SCAM 2014 (pp. 125-134). Los Alamitos, CA: IEEE Computer Society
Open this publication in new window or tab >>Impact of code refactoring using object-oriented methodology on a scientific computing application
2014 (English)In: Proc. 14th International Working Conference on Source Code Analysis and Manipulation, Los Alamitos, CA: IEEE Computer Society, 2014, p. 125-134Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Los Alamitos, CA: IEEE Computer Society, 2014
National Category
Software Engineering
Identifiers
urn:nbn:se:uu:diva-261721 (URN)10.1109/SCAM.2014.21 (DOI)000358876700017 ()978-0-7695-5304-7 (ISBN)
Conference
SCAM 2014
Projects
eSSENCE
Available from: 2014-09-28 Created: 2015-09-03 Last updated: 2018-01-11Bibliographically approved
Grandin, M. & Holmgren, S. (2014). Parallel data structures and algorithms for high-dimensional structured adaptive mesh refinement.
Open this publication in new window or tab >>Parallel data structures and algorithms for high-dimensional structured adaptive mesh refinement
2014 (English)Report (Other academic)
Series
Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2014-020
National Category
Computer Sciences Computational Mathematics
Identifiers
urn:nbn:se:uu:diva-234981 (URN)
Projects
eSSENCEUPMARC
Available from: 2014-10-31 Created: 2014-10-27 Last updated: 2018-01-11Bibliographically approved
Nettelblad, C., Mahjani, B. & Holmgren, S. (2013). Fast and accurate detection of multiple quantitative trait loci. Journal of Computational Biology, 20, 687-702
Open this publication in new window or tab >>Fast and accurate detection of multiple quantitative trait loci
2013 (English)In: Journal of Computational Biology, ISSN 1066-5277, E-ISSN 1557-8666, Vol. 20, p. 687-702Article in journal (Refereed) Published
National Category
Bioinformatics and Systems Biology Genetics Computational Mathematics Probability Theory and Statistics
Identifiers
urn:nbn:se:uu:diva-180916 (URN)10.1089/cmb.2012.0242 (DOI)000323822000006 ()
Projects
eSSENCE
Available from: 2013-08-06 Created: 2012-09-13 Last updated: 2017-12-07Bibliographically approved
Nelson, R. M., Nettelblad, C., Pettersson, M. E., Shen, X., Crooks, L., Besnier, F., . . . Carlborg, Ö. (2013). MAPfastR: Quantitative trait loci mapping in outbred line crosses. G3: Genes, Genomes, Genetics, 3, 2147-2149
Open this publication in new window or tab >>MAPfastR: Quantitative trait loci mapping in outbred line crosses
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2013 (English)In: G3: Genes, Genomes, Genetics, ISSN 2160-1836, E-ISSN 2160-1836, Vol. 3, p. 2147-2149Article in journal (Refereed) Published
National Category
Computational Mathematics Genetics Bioinformatics and Systems Biology
Identifiers
urn:nbn:se:uu:diva-180917 (URN)10.1534/g3.113.008623 (DOI)000328334500005 ()
Projects
eSSENCE
Available from: 2013-10-11 Created: 2012-09-13 Last updated: 2017-12-07Bibliographically approved
Laure, E. & Holmgren, S. (2013). Preface: e-Science Applications and Tools. Future generations computer systems, 29(8), 2115-2116
Open this publication in new window or tab >>Preface: e-Science Applications and Tools
2013 (English)In: Future generations computer systems, ISSN 0167-739X, E-ISSN 1872-7115, Vol. 29, no 8, p. 2115-2116Article, review/survey (Refereed) Published
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:uu:diva-208981 (URN)10.1016/j.future.2013.05.011 (DOI)000326613400021 ()
Projects
eSSENCE
Available from: 2013-05-24 Created: 2013-10-11 Last updated: 2018-01-11Bibliographically approved
Andrejev, A., Toor, S., Hellander, A., Holmgren, S. & Risch, T. (2013). Scientific analysis by queries in extended SPARQL over a scalable e-Science data store. In: Proc. 9th International Conference on e-Science: (pp. 98-106). Los Alamitos, CA: IEEE Computer Society
Open this publication in new window or tab >>Scientific analysis by queries in extended SPARQL over a scalable e-Science data store
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2013 (English)In: Proc. 9th International Conference on e-Science, Los Alamitos, CA: IEEE Computer Society, 2013, p. 98-106Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Los Alamitos, CA: IEEE Computer Society, 2013
National Category
Computer Sciences
Identifiers
urn:nbn:se:uu:diva-173448 (URN)10.1109/eScience.2013.19 (DOI)000330195500012 ()978-0-7695-5083-1 (ISBN)
Projects
eSSENCE
Available from: 2013-10-25 Created: 2012-04-24 Last updated: 2018-01-12Bibliographically approved
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