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Ferm, Lars

Open this publication in new window or tab >>An adaptive algorithm for simulation of stochastic reaction-diffusion processes### Ferm, Lars

### Hellander, Andreas

### Lötstedt, Per

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##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-108918 (URN)10.1016/j.jcp.2009.09.030 (DOI)000272760500008 ()
#####

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##### Projects

eSSENCE
Available from: 2009-10-04 Created: 2009-10-04 Last updated: 2018-01-13Bibliographically approved

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.

Open this publication in new window or tab >>Adaptive solution of the master equation in low dimensions### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_1_j_idt188_some",{id:"formSmash:j_idt184:1:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_1_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_1_j_idt188_otherAuthors",{id:"formSmash:j_idt184:1:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_1_j_idt188_otherAuthors",multiple:true}); 2009 (English)In: Applied Numerical Mathematics, ISSN 0168-9274, E-ISSN 1873-5460, Vol. 59, p. 187-204Article in journal (Refereed) Published
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-15173 (URN)10.1016/j.apnum.2008.01.004 (DOI)000261485800011 ()
#####

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Available from: 2008-10-02 Created: 2008-10-02 Last updated: 2018-01-12Bibliographically approved

Open this publication in new window or tab >>Adaptive stochastic hybrid simulation of biochemical reaction-diffusion models### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_2_j_idt188_some",{id:"formSmash:j_idt184:2:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_2_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_2_j_idt188_otherAuthors",{id:"formSmash:j_idt184:2:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_2_j_idt188_otherAuthors",multiple:true}); 2009 (English)In: Proc. 3rd International Conference on Foundations of Systems Biology in Engineering, The Systems Biology Institute , 2009, p. 4-Conference paper, Published paper (Refereed)
##### Place, publisher, year, edition, pages

The Systems Biology Institute, 2009
##### National Category

Computer Sciences Biochemistry and Molecular Biology
##### Identifiers

urn:nbn:se:uu:diva-128451 (URN)
#####

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Available from: 2009-08-12 Created: 2010-07-20 Last updated: 2018-01-12Bibliographically approved

Open this publication in new window or tab >>An adaptive algorithm for simulation of stochastic reaction-diffusion processes### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_3_j_idt188_some",{id:"formSmash:j_idt184:3:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_3_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_3_j_idt188_otherAuthors",{id:"formSmash:j_idt184:3:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_3_j_idt188_otherAuthors",multiple:true}); 2009 (English)Report (Other academic)
##### Series

Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2009-010
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-102630 (URN)
#####

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Available from: 2009-05-10 Created: 2009-05-10 Last updated: 2018-01-13Bibliographically approved

Open this publication in new window or tab >>Simulation of stochastic reaction-diffusion processes on unstructured meshes### Engblom, Stefan

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_4_j_idt188_some",{id:"formSmash:j_idt184:4:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_4_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_4_j_idt188_otherAuthors",{id:"formSmash:j_idt184:4:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_4_j_idt188_otherAuthors",multiple:true}); 2009 (English)In: SIAM Journal on Scientific Computing, ISSN 1064-8275, E-ISSN 1095-7197, Vol. 31, p. 1774-1797Article in journal (Refereed) Published
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-97689 (URN)10.1137/080721388 (DOI)000267746200008 ()
#####

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Available from: 2008-11-07 Created: 2008-11-07 Last updated: 2018-11-12Bibliographically approved

Open this publication in new window or tab >>A hierarchy of approximations of the master equation scaled by a size parameter### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_5_j_idt188_some",{id:"formSmash:j_idt184:5:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_5_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_5_j_idt188_otherAuthors",{id:"formSmash:j_idt184:5:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_5_j_idt188_otherAuthors",multiple:true}); 2008 (English)In: Journal of Scientific Computing, ISSN 0885-7474, E-ISSN 1573-7691, Vol. 34, p. 127-151Article in journal (Refereed) Published
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-12482 (URN)10.1007/s10915-007-9179-z (DOI)000252419800002 ()
#####

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Available from: 2008-01-16 Created: 2008-01-16 Last updated: 2018-01-12Bibliographically approved

Open this publication in new window or tab >>Simulation of stochastic reaction-diffusion processes on unstructured meshes### Engblom, Stefan

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_6_j_idt188_some",{id:"formSmash:j_idt184:6:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_6_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_6_j_idt188_otherAuthors",{id:"formSmash:j_idt184:6:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_6_j_idt188_otherAuthors",multiple:true}); 2008 (English)Report (Other academic)
##### Series

Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2008-012
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-16090 (URN)
#####

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Available from: 2008-04-18 Created: 2008-04-18 Last updated: 2018-11-12Bibliographically approved

Open this publication in new window or tab >>A hierarchy of approximations of the master equation scaled by a size parameter### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Hellander, Andreas

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_7_j_idt188_some",{id:"formSmash:j_idt184:7:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_7_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_7_j_idt188_otherAuthors",{id:"formSmash:j_idt184:7:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_7_j_idt188_otherAuthors",multiple:true}); 2007 (English)Report (Other academic)
##### Series

Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2007-011
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-10632 (URN)
#####

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Available from: 2007-04-17 Created: 2007-04-17 Last updated: 2018-01-12Bibliographically approved

Open this publication in new window or tab >>Adaptive solution of the master equation in low dimensions### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_8_j_idt188_some",{id:"formSmash:j_idt184:8:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_8_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_8_j_idt188_otherAuthors",{id:"formSmash:j_idt184:8:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_8_j_idt188_otherAuthors",multiple:true}); 2007 (English)Report (Other academic)
##### Series

Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2007-023
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-11339 (URN)
#####

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Available from: 2007-09-06 Created: 2007-09-06 Last updated: 2018-01-12Bibliographically approved

Open this publication in new window or tab >>Numerical method for coupling the macro and meso scales in stochastic chemical kinetics### Ferm, Lars

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.### Lötstedt, Per

Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Scientific Computing. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Numerical Analysis.PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_9_j_idt188_some",{id:"formSmash:j_idt184:9:j_idt188:some",widgetVar:"widget_formSmash_j_idt184_9_j_idt188_some",multiple:true}); PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_9_j_idt188_otherAuthors",{id:"formSmash:j_idt184:9:j_idt188:otherAuthors",widgetVar:"widget_formSmash_j_idt184_9_j_idt188_otherAuthors",multiple:true}); 2007 (English)In: BIT Numerical Mathematics, ISSN 0006-3835, E-ISSN 1572-9125, Vol. 47, p. 735-762Article in journal (Refereed) Published
##### National Category

Computational Mathematics Computer Sciences
##### Identifiers

urn:nbn:se:uu:diva-11629 (URN)10.1007/s10543-007-0150-z (DOI)000251380800005 ()
#####

PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_9_j_idt188_j_idt359",{id:"formSmash:j_idt184:9:j_idt188:j_idt359",widgetVar:"widget_formSmash_j_idt184_9_j_idt188_j_idt359",multiple:true});
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PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_9_j_idt188_j_idt365",{id:"formSmash:j_idt184:9:j_idt188:j_idt365",widgetVar:"widget_formSmash_j_idt184_9_j_idt188_j_idt365",multiple:true});
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PrimeFaces.cw("AccordionPanel","widget_formSmash_j_idt184_9_j_idt188_j_idt371",{id:"formSmash:j_idt184:9:j_idt188:j_idt371",widgetVar:"widget_formSmash_j_idt184_9_j_idt188_j_idt371",multiple:true});
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Available from: 2007-12-04 Created: 2007-12-04 Last updated: 2018-01-12Bibliographically approved