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Publications (10 of 23) Show all publications
Ausmees, K., John, A., Toor, S. Z., Hellander, A. & Nettelblad, C. (2018). BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data. BMC Bioinformatics, 19, 240:1-11, Article ID 240.
Open this publication in new window or tab >>BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data
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2018 (English)In: BMC Bioinformatics, ISSN 1471-2105, E-ISSN 1471-2105, Vol. 19, p. 240:1-11, article id 240Article in journal (Refereed) Published
National Category
Software Engineering Genetics
Identifiers
urn:nbn:se:uu:diva-360033 (URN)10.1186/s12859-018-2241-z (DOI)000436517200001 ()29940842 (PubMedID)
Projects
eSSENCE
Available from: 2018-06-26 Created: 2018-09-09 Last updated: 2019-07-01Bibliographically approved
Ahmed, L., Georgiev, V., Capuccini, M., Toor, S., Schaal, W., Laure, E. & Spjuth, O. (2018). Efficient iterative virtual screening with Apache Spark and conformal prediction. Journal of Cheminformatics, 10, Article ID 8.
Open this publication in new window or tab >>Efficient iterative virtual screening with Apache Spark and conformal prediction
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2018 (English)In: Journal of Cheminformatics, ISSN 1758-2946, E-ISSN 1758-2946, Vol. 10, article id 8Article in journal (Refereed) Published
National Category
Bioinformatics (Computational Biology)
Identifiers
urn:nbn:se:uu:diva-343980 (URN)10.1186/s13321-018-0265-z (DOI)000426699400001 ()29492726 (PubMedID)
Projects
eSSENCE
Available from: 2018-03-01 Created: 2018-03-03 Last updated: 2019-06-24Bibliographically approved
Torruangwatthana, P., Wieslander, H., Blamey, B., Hellander, A. & Toor, S. (2018). HarmonicIO: Scalable data stream processing for scientific datasets. In: Proc. 11th International Conference on Cloud Computing: . Paper presented at CLOUD 2018, July 2–7, San Francisco, CA (pp. 879-882). Los Alamitos, CA: IEEE Computer Society
Open this publication in new window or tab >>HarmonicIO: Scalable data stream processing for scientific datasets
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2018 (English)In: Proc. 11th International Conference on Cloud Computing, Los Alamitos, CA: IEEE Computer Society, 2018, p. 879-882Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Los Alamitos, CA: IEEE Computer Society, 2018
National Category
Software Engineering
Identifiers
urn:nbn:se:uu:diva-364671 (URN)10.1109/CLOUD.2018.00126 (DOI)000454741700119 ()978-1-5386-7235-8 (ISBN)
Conference
CLOUD 2018, July 2–7, San Francisco, CA
Projects
eSSENCE
Available from: 2018-09-10 Created: 2018-10-31 Last updated: 2019-01-24Bibliographically approved
Mahjani, B., Toor, S., Nettelblad, C. & Holmgren, S. (2017). A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits. IEEE/ACM Transactions on Computational Biology & Bioinformatics, 14, 381-392
Open this publication in new window or tab >>A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits
2017 (English)In: IEEE/ACM Transactions on Computational Biology & Bioinformatics, ISSN 1545-5963, E-ISSN 1557-9964, Vol. 14, p. 381-392Article in journal (Refereed) Published
National Category
Computational Mathematics Bioinformatics and Systems Biology
Identifiers
urn:nbn:se:uu:diva-284372 (URN)10.1109/TCBB.2016.2527639 (DOI)000399013500017 ()26887003 (PubMedID)
Projects
eSSENCE
Available from: 2016-02-11 Created: 2016-04-18 Last updated: 2018-09-18Bibliographically approved
Jallow, A., Hellander, A. & Toor, S. (2017). Cost-aware application development and management using CLOUD-METRIC. In: Proc. 7th International Conference on Cloud Computing and Services Science: . Paper presented at CLOSER 2017 (pp. 515-522). Setúbal, Portugal: SciTePress
Open this publication in new window or tab >>Cost-aware application development and management using CLOUD-METRIC
2017 (English)In: Proc. 7th International Conference on Cloud Computing and Services Science, Setúbal, Portugal: SciTePress, 2017, p. 515-522Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Setúbal, Portugal: SciTePress, 2017
National Category
Software Engineering
Identifiers
urn:nbn:se:uu:diva-326539 (URN)10.5220/0006307505150522 (DOI)000465221900050 ()978-989-758-243-1 (ISBN)
Conference
CLOSER 2017
Projects
eSSENCE
Available from: 2017-04-29 Created: 2017-07-13 Last updated: 2019-08-29Bibliographically approved
Toor, S., Lindberg, M., Fällman, I., Vallin, A., Mohill, O., Freyhult, P., . . . Hellander, A. (2017). SNIC Science Cloud (SSC): A national-scale cloud infrastructure for Swedish academia. In: Proc. 13th International Conference on e-Science: . Paper presented at e-Science 2017, October 24–27, Auckland, New Zealand (pp. 219-227). Los Alamitos, CA: IEEE Computer Society
Open this publication in new window or tab >>SNIC Science Cloud (SSC): A national-scale cloud infrastructure for Swedish academia
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2017 (English)In: Proc. 13th International Conference on e-Science, Los Alamitos, CA: IEEE Computer Society, 2017, p. 219-227Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Los Alamitos, CA: IEEE Computer Society, 2017
National Category
Computer and Information Sciences
Identifiers
urn:nbn:se:uu:diva-334646 (URN)10.1109/eScience.2017.35 (DOI)000426071600024 ()978-1-5386-2686-3 (ISBN)
Conference
e-Science 2017, October 24–27, Auckland, New Zealand
Projects
eSSENCE
Funder
Swedish National Infrastructure for Computing (SNIC)
Available from: 2017-11-16 Created: 2017-11-24 Last updated: 2018-05-25Bibliographically approved
Drawert, B., Trogdon, M., Toor, S., Petzold, L. & Hellander, A. (2016). MOLNs: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using PyURDME. SIAM Journal on Scientific Computing, 38, C179-C202
Open this publication in new window or tab >>MOLNs: A cloud platform for interactive, reproducible, and scalable spatial stochastic computational experiments in systems biology using PyURDME
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2016 (English)In: SIAM Journal on Scientific Computing, ISSN 1064-8275, E-ISSN 1095-7197, Vol. 38, p. C179-C202Article in journal (Refereed) Published
National Category
Software Engineering Biochemistry and Molecular Biology
Identifiers
urn:nbn:se:uu:diva-295626 (URN)10.1137/15M1014784 (DOI)000385282800037 ()
Projects
eSSENCE
Available from: 2016-06-01 Created: 2016-06-08 Last updated: 2018-01-10Bibliographically approved
Mahjani, B., Toor, S., Nettelblad, C. & Holmgren, S. (2016). QTL as a service: PruneDIRECT for multi-dimensional QTL scans in cloud settings. Bioinformatics
Open this publication in new window or tab >>QTL as a service: PruneDIRECT for multi-dimensional QTL scans in cloud settings
2016 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811Article in journal (Other academic) Submitted
National Category
Bioinformatics and Systems Biology Software Engineering
Identifiers
urn:nbn:se:uu:diva-284376 (URN)
Projects
eSSENCE
Available from: 2016-04-18 Created: 2016-04-18 Last updated: 2018-01-10Bibliographically approved
Mahjani, B. & Toor, S. (2016). Software as a service in analysis of quantitative trait loci.
Open this publication in new window or tab >>Software as a service in analysis of quantitative trait loci
2016 (English)Report (Other academic)
National Category
Bioinformatics and Systems Biology Software Engineering
Identifiers
urn:nbn:se:uu:diva-284375 (URN)
Projects
eSSENCE
Available from: 2016-04-18 Created: 2016-04-18 Last updated: 2018-01-10Bibliographically approved
Andrejev, A., Toor, S., Hellander, A., Holmgren, S. & Risch, T. (2013). Scientific analysis by queries in extended SPARQL over a scalable e-Science data store. In: Proc. 9th International Conference on e-Science: (pp. 98-106). Los Alamitos, CA: IEEE Computer Society
Open this publication in new window or tab >>Scientific analysis by queries in extended SPARQL over a scalable e-Science data store
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2013 (English)In: Proc. 9th International Conference on e-Science, Los Alamitos, CA: IEEE Computer Society, 2013, p. 98-106Conference paper, Published paper (Refereed)
Place, publisher, year, edition, pages
Los Alamitos, CA: IEEE Computer Society, 2013
National Category
Computer Sciences
Identifiers
urn:nbn:se:uu:diva-173448 (URN)10.1109/eScience.2013.19 (DOI)000330195500012 ()978-0-7695-5083-1 (ISBN)
Projects
eSSENCE
Available from: 2013-10-25 Created: 2012-04-24 Last updated: 2018-01-12Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-0302-6276

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