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Publications (10 of 36) Show all publications
Ausmees, K., Sanchez-Quinto, F., Jakobsson, M. & Nettelblad, C. (2019). An empirical evaluation of genotype imputation of ancient DNA.
Open this publication in new window or tab >>An empirical evaluation of genotype imputation of ancient DNA
2019 (English)Report (Other academic)
Series
Technical report / Department of Information Technology, Uppsala University, ISSN 1404-3203 ; 2019-008
National Category
Computational Mathematics Genetics
Identifiers
urn:nbn:se:uu:diva-396336 (URN)
Projects
eSSENCE
Available from: 2019-11-04 Created: 2019-11-04 Last updated: 2019-11-11Bibliographically approved
Bielecki, J., Hantke, M. F., Daurer, B. J., Reddy, H. K. N., Hasse, D., Larsson, D. S. D., . . . Maia, F. R. N. (2019). Electrospray sample injection for single-particle imaging with x-ray lasers. Science Advances, 5(5), Article ID eaav8801.
Open this publication in new window or tab >>Electrospray sample injection for single-particle imaging with x-ray lasers
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2019 (English)In: Science Advances, E-ISSN 2375-2548, Vol. 5, no 5, article id eaav8801Article in journal (Refereed) Published
National Category
Biophysics
Identifiers
urn:nbn:se:uu:diva-387970 (URN)10.1126/sciadv.aav8801 (DOI)000470125000080 ()31058226 (PubMedID)
Available from: 2019-05-03 Created: 2019-06-27 Last updated: 2019-06-27Bibliographically approved
Günther, T. & Nettelblad, C. (2019). The presence and impact of reference bias on population genomic studies of prehistoric human populations. PLoS Genetics, 15(7), Article ID e1008302.
Open this publication in new window or tab >>The presence and impact of reference bias on population genomic studies of prehistoric human populations
2019 (English)In: PLoS Genetics, ISSN 1553-7390, E-ISSN 1553-7404, Vol. 15, no 7, article id e1008302Article in journal (Refereed) Published
National Category
Genetics Bioinformatics (Computational Biology)
Identifiers
urn:nbn:se:uu:diva-392499 (URN)10.1371/journal.pgen.1008302 (DOI)000478689100037 ()31348818 (PubMedID)
Projects
eSSENCE
Available from: 2019-07-26 Created: 2019-09-05 Last updated: 2019-09-23Bibliographically approved
Pietrini, A., Bielecki, J., Timneanu, N., Hantke, M. F., Andreasson, J., Loh, N. D., . . . Nettelblad, C. (2018). A statistical approach to detect protein complexes at X-ray free electron laser facilities. Communications Physics, 1, 92:1-11, Article ID 92.
Open this publication in new window or tab >>A statistical approach to detect protein complexes at X-ray free electron laser facilities
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2018 (English)In: Communications Physics, E-ISSN 2399-3650, Vol. 1, p. 92:1-11, article id 92Article in journal (Refereed) Published
National Category
Biophysics
Identifiers
urn:nbn:se:uu:diva-369876 (URN)10.1038/s42005-018-0092-6 (DOI)000452676300003 ()
Projects
eSSENCE
Available from: 2018-12-07 Created: 2018-12-17 Last updated: 2019-05-06Bibliographically approved
Liu, J., Engblom, S. & Nettelblad, C. (2018). Assessing uncertainties in x-ray single-particle three-dimensional reconstruction. Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, 98, 013303:1-12, Article ID 013303.
Open this publication in new window or tab >>Assessing uncertainties in x-ray single-particle three-dimensional reconstruction
2018 (English)In: Physical Review E. Statistical, Nonlinear, and Soft Matter Physics, ISSN 1539-3755, E-ISSN 1550-2376, Vol. 98, p. 013303:1-12, article id 013303Article in journal (Refereed) Published
National Category
Computer Sciences Biophysics
Identifiers
urn:nbn:se:uu:diva-355899 (URN)10.1103/PhysRevE.98.013303 (DOI)000437672700009 ()30110794 (PubMedID)
Projects
UPMARCeSSENCE
Available from: 2018-07-05 Created: 2018-07-07 Last updated: 2019-06-26Bibliographically approved
Ausmees, K., John, A., Toor, S. Z., Hellander, A. & Nettelblad, C. (2018). BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data. BMC Bioinformatics, 19, 240:1-11, Article ID 240.
Open this publication in new window or tab >>BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data
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2018 (English)In: BMC Bioinformatics, ISSN 1471-2105, E-ISSN 1471-2105, Vol. 19, p. 240:1-11, article id 240Article in journal (Refereed) Published
National Category
Software Engineering Genetics
Identifiers
urn:nbn:se:uu:diva-360033 (URN)10.1186/s12859-018-2241-z (DOI)000436517200001 ()29940842 (PubMedID)
Projects
eSSENCE
Available from: 2018-06-26 Created: 2018-09-09 Last updated: 2019-11-11Bibliographically approved
Lundholm, I. V., Sellberg, J. A., Ekeberg, T., Hantke, M. F., Okamoto, K., van der Schot, G., . . . Maia, F. R. N. (2018). Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging. IUCrJ, 5, 531-541
Open this publication in new window or tab >>Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging
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2018 (English)In: IUCrJ, ISSN 0972-6918, E-ISSN 2052-2525, Vol. 5, p. 531-541Article in journal (Refereed) Published
National Category
Biophysics
Identifiers
urn:nbn:se:uu:diva-360034 (URN)10.1107/S2052252518010047 (DOI)000444010100003 ()
Projects
eSSENCE
Available from: 2018-09-01 Created: 2018-09-09 Last updated: 2019-07-01Bibliographically approved
Gorkhover, T., Ulmer, A., Ferguson, K., Bucher, M., Maia, F. R. N., Bielecki, J., . . . Bostedt, C. (2018). Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles [Letter to the editor]. Nature Photonics, 12, 150-153
Open this publication in new window or tab >>Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles
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2018 (English)In: Nature Photonics, ISSN 1749-4885, E-ISSN 1749-4893, Vol. 12, p. 150-153Article in journal, Letter (Refereed) Published
National Category
Biophysics
Identifiers
urn:nbn:se:uu:diva-345590 (URN)10.1038/s41566-018-0110-y (DOI)000426153800014 ()
Projects
eSSENCE
Available from: 2018-02-26 Created: 2018-03-09 Last updated: 2019-07-01Bibliographically approved
Pietrini, A. & Nettelblad, C. (2018). Using convex optimization of autocorrelation with constrained support and windowing for improved phase retrieval accuracy. Optics Express, 26, 24422-24443
Open this publication in new window or tab >>Using convex optimization of autocorrelation with constrained support and windowing for improved phase retrieval accuracy
2018 (English)In: Optics Express, ISSN 1094-4087, E-ISSN 1094-4087, Vol. 26, p. 24422-24443Article in journal (Refereed) Published
National Category
Computational Mathematics Biophysics
Identifiers
urn:nbn:se:uu:diva-360037 (URN)10.1364/OE.26.024422 (DOI)000444705000012 ()30469561 (PubMedID)
Projects
eSSENCE
Available from: 2018-09-05 Created: 2018-09-09 Last updated: 2019-01-14Bibliographically approved
Mahjani, B., Toor, S., Nettelblad, C. & Holmgren, S. (2017). A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits. IEEE/ACM Transactions on Computational Biology & Bioinformatics, 14, 381-392
Open this publication in new window or tab >>A flexible computational framework using R and Map-Reduce for permutation tests of massive genetic analysis of complex traits
2017 (English)In: IEEE/ACM Transactions on Computational Biology & Bioinformatics, ISSN 1545-5963, E-ISSN 1557-9964, Vol. 14, p. 381-392Article in journal (Refereed) Published
National Category
Computational Mathematics Bioinformatics and Systems Biology
Identifiers
urn:nbn:se:uu:diva-284372 (URN)10.1109/TCBB.2016.2527639 (DOI)000399013500017 ()26887003 (PubMedID)
Projects
eSSENCE
Available from: 2016-02-11 Created: 2016-04-18 Last updated: 2018-09-18Bibliographically approved
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-0458-6902

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