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Large-scale Inference of Liver Fat with Neural Networks on UK Biobank Body MRI
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology. (PET/MR)ORCID iD: 0000-0002-8616-7666
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Computerized Image Analysis and Human-Computer Interaction. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Visual Information and Interaction. Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology.ORCID iD: 0000-0001-7764-1787
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology. Antaros Medical.ORCID iD: 0000-0002-8701-969x
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology. Antaros Medical.ORCID iD: 0000-0001-8205-7569
2020 (English)In: International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI) 2020 / [ed] Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu & Leo Joskowicz, Cham: Springer, 2020, p. 602-611Conference paper, Published paper (Refereed)
Abstract [en]

The UK Biobank Imaging Study has acquired medical scans of more than 40,000 volunteer participants. The resulting wealth of anatomical information has been made available for research, together with extensive metadata including measurements of liver fat. These values play an important role in metabolic disease, but are only available for a minority of imaged subjects as their collection requires the careful work of image analysts on dedicated liver MRI. Another UK Biobank protocol is neck-to-knee body MRI for analysis of body composition. The resulting volumes can also quantify fat fractions, even though they were reconstructed with a two- instead of a three-point Dixon technique. In this work, a novel framework for automated inference of liver fat from UK Biobank neck-to-knee body MRI is proposed. A ResNet50 was trained for regression on two-dimensional slices from these scans and the reference values as target, without any need for ground truth segmentations. Once trained, it performs fast, objective, and fully automated predictions that require no manual intervention. On the given data, it closely emulates the reference method, reaching a level of agreement comparable to different gold standard techniques. The network learned to rectify non-linearities in the fat fraction values and identified several outliers in the reference. It outperformed a multi-atlas segmentation baseline and inferred new estimates for all imaged subjects lacking reference values, expanding the total number of liver fat measurements by factor six.

Place, publisher, year, edition, pages
Cham: Springer, 2020. p. 602-611
Series
Lecture Notes in Computer Science ; 12262
Keywords [en]
Magnetic resonance imaging (MRI), Liver fat, Neural network
National Category
Medical Imaging
Research subject
Medical Informatics; Computerized Image Processing
Identifiers
URN: urn:nbn:se:uu:diva-449457DOI: 10.1007/978-3-030-59713-9_58ISBN: 978-3-030-59712-2 (print)ISBN: 978-3-030-59713-9 (electronic)OAI: oai:DiVA.org:uu-449457DiVA, id: diva2:1581954
Conference
MICCAI 2020, 4-8 October, Lima, Peru
Funder
Swedish Research Council, 2016-01040Swedish Research Council, 2019-0475Swedish Heart Lung FoundationAvailable from: 2021-07-27 Created: 2021-07-27 Last updated: 2025-02-09Bibliographically approved

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Langner, TaroStrand, RobinAhlström, HåkanKullberg, Joel

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Total: 58 hits
CiteExportLink to record
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