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Taxonomy and functional capacity of the global inland water microbiome
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Limnology. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-5574-5531
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Evolution. Uppsala University, Science for Life Laboratory, SciLifeLab.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Limnology. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-8622-0308
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Limnology. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-4265-1835
(English)Manuscript (preprint) (Other academic)
National Category
Microbiology
Research subject
Biology with specialization in Microbiology
Identifiers
URN: urn:nbn:se:uu:diva-473081OAI: oai:DiVA.org:uu-473081DiVA, id: diva2:1653334
Available from: 2022-04-21 Created: 2022-04-21 Last updated: 2022-04-28
In thesis
1. An exploration of freshwater microbial ecology: from streamlined genera to global networks
Open this publication in new window or tab >>An exploration of freshwater microbial ecology: from streamlined genera to global networks
2022 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Microbes are the main drivers of biogeochemical cycles on Earth and even though freshwaters cover only a small area of terrestrial surfaces their contribution to global cycles is important. Global cycles are measured by exchanges between systems e.g. water to atmosphere or lithosphere and are mediated by microbial communities. Cyanobacteria and other photosynthetic microbes can be highly abundant going through cyclic blooms. These blooms are attributed to their ability to harness sunlight and CO2 to outgrow competitors by using their complex and expensive to produce photosystems. In contrast there are microbial lineages termed ‘streamlined’, that are just as abundant as cyanobacteria at times, but who have much smaller cells, small genomes, and grow and replicate slowly. It is not immediately apparent how microbes with such different lifestyles can have similar ‘success’. By investigating individual streamlined lineages and their interactions we see that they appear to have co-evolved dependencies with each other and are highly successful as consortia. By comparing consortia from different lakes we see that streamlined microbes can sit either adjacent or in the middle of carbon cycling end-points and may be more directly involved than thought in mediating methane and CO2 ratios. An analysis of global inland water microbiomes finds that around one third of the core microbial lineages in inland waters are streamlined.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2022. p. 56
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2159
Keywords
microbiology, ecology, networks, streamlined, aquatic
National Category
Microbiology
Research subject
Biology with specialization in Limnology
Identifiers
urn:nbn:se:uu:diva-472455 (URN)978-91-513-1523-2 (ISBN)
Public defence
2022-06-10, Ekmansalen, EBC, Norbyvägen 18, Uppsala, 13:00 (English)
Opponent
Supervisors
Available from: 2022-05-18 Created: 2022-04-28 Last updated: 2022-06-15

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Mondav, RhiannonDharamshi, JennahGarcia, Sarahi L.Bertilsson, Stefan

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CiteExportLink to record
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Citation style
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