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Author:
Gutiérrez Arenas, Omar (Uppsala University, Department of Biochemistry)
Title:
Sensitivity, Noise and Detection of Enzyme Inhibition in Progress Curves
Department:
Uppsala University, Teknisk-naturvetenskapliga vetenskapsområdet, Chemistry, Department of Biochemistry
Publication type:
Doctoral thesis, comprehensive summary (Other academic)
Language:
English
Place of publ.:
Uppsala
Publisher:
Acta Universitatis Upsaliensis
Pages:
50
Series:
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214; 184
Year of publ.:
2006
URI:
urn:nbn:se:uu:diva-6886
Permanent link:
http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-6886
ISBN:
91-554-6569-2
Keywords(en) :
Biochemistry, Progress curves, limit of detection, Z'-factor, primary screening, enzyme inhibition, error structure, sensitivity analysis, High-throughput screning
Keywords(sv) :
Biokemi
Abstract(en) :

Starting with the development of an enzymatic assay, where an enzyme in solution hydrolysed a solid-phase bound peptide, a model for the kinetics of enzyme action was introduced. This model allowed the estimation of kinetic parameters and enzyme activity for a system that has the peculiarity of not being saturable with the substrate, but with the enzyme. In a derivation of the model, it was found that the sensitivity of the signal to variations in the enzyme concentration had a transient increase along the reaction progress with a maximum at high substrate conversion levels.

The same behaviour was derived for the sensitivity in classical homogeneous enzymatic assays and experimental evidence of this was obtained. The impact of the transient increase of the sensitivity on the error structure, and on the ability of homogeneous end-point enzymatic assays to detect competitive inhibition, came into focus. First, a non-monotonous shape in the standard deviation of progress curve data was found and it was attributed to the random dispersion in the enzyme concentration operating through the transient increase in the sensitivity. Second, a model for the detection limit of the quantity Ki/[I] (the IDL-factor) as a function of the substrate conversion level was developed for homogeneous end-point enzymatic assays.

It was found that the substrate conversion level where the IDL-factor reached an optimum was beyond the initial velocity range. Moreover, at this optimal point not only the ability to detect inhibitors but also the robustness of the assays was maximized. These results may prove to be relevant in drug discovery for optimising end point homogeneous enzymatic assays that are used to find inhibitors against a target enzyme in compound libraries, which are usually big (>10000) and crowded with irrelevant compounds.

Public defence:
2006-05-29, Room B41, BMC, Husarg. 3, Uppsala, 10:00
Degree:
degree of Doctor of Philosophy
Supervisor:
Danielson, Helena, Professor
Opponent:
Cornish-Bowden, Athel, Dr (Marseilles Group of CNRS Laboratories, Marseilles)
Available from:
2006-05-08
Created:
2007-08-16
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