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Latent linear dynamics in spatiotemporal medical data
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Artificial Intelligence. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Systems and Control.ORCID iD: 0000-0002-9013-949x
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Systems and Control. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Artificial Intelligence.ORCID iD: 0000-0002-9099-3522
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Systems and Control. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Automatic control. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Artificial Intelligence.ORCID iD: 0000-0001-5183-234X
(English)Manuscript (preprint) (Other academic)
National Category
Engineering and Technology
Identifiers
URN: urn:nbn:se:uu:diva-484321OAI: oai:DiVA.org:uu-484321DiVA, id: diva2:1694507
Available from: 2022-09-09 Created: 2022-09-09 Last updated: 2022-11-21Bibliographically approved
In thesis
1. On the Registration and Modeling of Sequential Medical Images
Open this publication in new window or tab >>On the Registration and Modeling of Sequential Medical Images
2021 (English)Licentiate thesis, comprehensive summary (Other academic)
Abstract [en]

Real-time imaging can be used to monitor, analyze and control medical treatments. In this thesis, we want to explain the spatiotemporal motion and thus enable more advanced procedures, especially real-time adaptation in radiation therapy. The motion occurring between image acquisitions can be quantified by image registration, which generates a mapping between the images. The contribution of the thesis consists of three papers, where we have used different approaches to estimate the motion between images.

In Paper I, we combine a state-of-the-art method in real-time tracking with a learned sparse-to-dense interpolation scheme. For this, we track an arbitrary number of regions in a sequence of medical images. We estimated a sparse displacement field, based on the tracking positions and used the interpolation network to achieve its dense representation.

Paper II was a contribution to a challenge in learnable image registration where we finished at 2nd place. Here we train a deep learning method to estimate the dense displacement field between two images. For this, we used a network architecture inspired by both conventional medical image registration methods and optical flow in computer vision.

For Paper III, we estimate the dynamics of spatiotemporal images by training a generative network. We use nonlinear dimensional reduction techniques and assume a linear dynamic in a low-dimensional latent space. In comparison with conventional image registration methods, we provide a method more suitable for real-world scenarios, with the possibility of imputation and extrapolation. Although the problem is challenging and several questions are left unanswered we believe a combination of conventional, learnable, and dynamic modeling of the motion is the way forward.

Place, publisher, year, edition, pages
Uppsala: Uppsala University, 2021. p. 145
Series
Information technology licentiate theses: Licentiate theses from the Department of Information Technology, ISSN 1404-5117 ; 2021-001
National Category
Signal Processing
Identifiers
urn:nbn:se:uu:diva-484289 (URN)
Available from: 2022-09-09 Created: 2022-09-09 Last updated: 2022-09-09Bibliographically approved

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Gunnarsson, NiklasSjölund, JensKimstrand, PeterSchön, Thomas B.

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