This paper introduces a stochastic framework for a recently proposed discrete-time delay estimation method in Laguerre-domain, i.e. with the delay block input and output signals being represented by the corresponding Laguerre series. A novel Laguerre-domain disturbance model allowing the involved signals to be square-summable sequences is devised. The relation to two commonly used time-domain disturbance models is clarified. Furthermore, by forming the input signal in a certain way, the signal shape of an additive output disturbance can be estimated and utilized for noise reduction. It is demonstrated that a significant improvement in the delay estimation error is achieved when the noise sequence is correlated. The noise reduction approach is applicable to other Laguerre-domain problems than pure delay estimation.