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Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of β-Lactamases
Department of Chemistry, Stanford University, Stanford, California 94305, United States.ORCID iD: 0000-0002-8532-333X
Department of Physics, Experimental Molecular Biophysics, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany;Research Building SupraFAB, Altensteinstreet 23a, 14195 Berlin, Germany.ORCID iD: 0000-0002-2115-4899
Stanford Synchrotron Radiation Lightsource, Menlo Park, California 94025, United States.ORCID iD: 0000-0001-6254-3519
Department of Chemistry, Scripps Research, La Jolla, California 92037, United States.ORCID iD: 0000-0002-7813-0302
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2022 (English)In: Journal of the American Chemical Society, ISSN 0002-7863, E-ISSN 1520-5126, Vol. 144, no 45, p. 20947-20954Article in journal (Refereed) Published
Abstract [en]

The widespread design of covalent drugs has focused on crafting reactive groups of proper electrophilicity and positioning toward targeted amino-acid nucleophiles. We found that environmental electric fields projected onto a reactive chemical bond, an overlooked design element, play essential roles in the covalent inhibition of TEM-1 β-lactamase by avibactam. Using the vibrational Stark effect, the magnitudes of the electric fields that are exerted by TEM active sites onto avibactam’s reactive C═O were measured and demonstrate an electrostatic gating effect that promotes bond formation yet relatively suppresses the reverse dissociation. These results suggest new principles of covalent drug design and off-target site prediction. Unlike shape and electrostatic complementary which address binding constants, electrostatic catalysis drives reaction rates, essential for covalent inhibition, and deepens our understanding of chemical reactivity, selectivity, and stability in complex systems.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2022. Vol. 144, no 45, p. 20947-20954
National Category
Biochemistry Molecular Biology
Research subject
Chemistry with specialization in Biophysics; Chemistry with specialization in Macromolecular Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-489433DOI: 10.1021/jacs.2c09876ISI: 000880893200001PubMedID: 36324090OAI: oai:DiVA.org:uu-489433DiVA, id: diva2:1714749
Funder
German Research Foundation (DFG), KO 5464/4Knut and Alice Wallenberg FoundationAvailable from: 2022-11-30 Created: 2022-11-30 Last updated: 2025-02-20Bibliographically approved

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Shamsudin, Yasmin

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Ji, ZheKozuch, JacekMathews, Irimpan I.Diercks, Christian S.Shamsudin, YasminSchulz, Mirjam A.Boxer, Steven G.
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Department of Chemistry - BMC
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