How, not if, is the question mycologists should be asking about DNA-based typificationUniv Tartu, Mycol & Microbiol Ctr, Liivi 2, EE-50409 Tartu, Estonia..
Univ Tartu, Inst Ecol & Earth Sci, Liivi 2, EE-50409 Tartu, Estonia..
Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden.;Univ Helsinki, Bot Unit Mycol, Finnish Museum Nat Hist, POB 7, Helsinki 00014, Finland..
Univ Tartu, Inst Ecol & Earth Sci, Liivi 2, EE-50409 Tartu, Estonia..
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Systematic Biology. Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden..
Swiss Fed Inst Technol, Dept Environm Syst Sci, Univ Str 2, CH-8092 Zurich, Switzerland..
Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden..
Chalmers Univ Technol, Interact Design & Software Engn, Lindholmsplatsen 1, S-41756 Gothenburg, Sweden..
Univ Bergen, Dept Clin Sci, Box 7804, N-5020 Bergen, Norway..
Univ Vienna, Dept Funct & Evolutionary Ecol, Djerassipl 1, A-1030 Vienna, Austria..
Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden..
Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden..
Univ Gothenburg, Gothenburg Global Biodivers Ctr, Dept Biol & Environm Sci, Box 461, S-40530 Gothenburg, Sweden..
Westerdijk Fungal Biodivers Inst, Uppsalalaan 8, NL-3584 Utrecht, Netherlands..
Iranian Res Org Sci & Technol, Dept Biotechnol, POB 3353-5111, Tehran 3353136846, Iran.;Swedish Univ Agr Sci, Dept Forest Mycol & Plant Pathol, Box 7026, S-75007 Uppsala, Sweden..
Chalmers Univ Technol, Dept Math Sci, Gothenburg, Sweden..
Univ Tartu, Nat Hist Museum, Vanemuise 46, EE-51014 Tartu, Estonia..
Show others and affiliations
2023 (English)In: MycoKeys, ISSN 1314-4057, E-ISSN 1314-4049, no 96, p. 143-157
Article in journal (Refereed) Published
Abstract [en]
Fungal metabarcoding of substrates such as soil, wood, and water is uncovering an unprecedented number of fungal species that do not seem to produce tangible morphological structures and that defy our best attempts at cultivation, thus falling outside the scope of the International Code of Nomenclature for algae, fungi, and plants. The present study uses the new, ninth release of the species hypotheses of the UNITE database to show that species discovery through environmental sequencing vastly outpaces traditional, Sanger sequencing-based efforts in a strongly increasing trend over the last five years. Our findings chal-lenge the present stance of some in the mycological community - that the current situation is satisfactory and that no change is needed to "the code" - and suggest that we should be discussing not whether to allow DNA-based descriptions (typifications) of species and by extension higher ranks of fungi, but what the precise requirements for such DNA-based typifications should be. We submit a tentative list of such criteria for further discussion. The present authors hope for a revitalized and deepened discussion on DNA-based typification, because to us it seems harmful and counter-productive to intentionally deny the overwhelming majority of extant fungi a formal standing under the International Code of Nomenclature for algae, fungi, and plants.
Place, publisher, year, edition, pages
Pensoft Publishers, 2023. no 96, p. 143-157
Keywords [en]
Dark taxa, ICN, nomenclature, species description, taxonomy, type principle
National Category
Biological Systematics Ecology Microbiology Bioinformatics and Computational Biology Botany
Identifiers
URN: urn:nbn:se:uu:diva-501988DOI: 10.3897/mycokeys.96.102669ISI: 000969119600001PubMedID: 37214179OAI: oai:DiVA.org:uu-501988DiVA, id: diva2:1758144
2023-05-222023-05-222025-02-05Bibliographically approved