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Protein identification by liquid chromatography-mass spectrometry using retention time prediction
Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Ion Physics.
Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Ion Physics. Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Physical and Analytical Chemistry, Analytical Chemistry.
Chemistry and Materials Science, Lawrence Livermore National Laboratory, USA.
Biology and Biotechnology Research Program, Lawrence Livermore National Laboratory, USA.
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2004 (English)In: Journal of chromatography. B, ISSN 1570-0232, E-ISSN 1873-376X, Vol. 803, no 1, 131-135 p.Article in journal (Refereed) Published
Abstract [en]

Liquid chromatography has been coupled with mass spectrometry to improve the dynamic range and to reduce the complexity of sample introduced to the mass spectrometer at any given time. The chromatographic separation also provides information on the analytes, such as peptides in enzymatic digests of proteins; information that can be used when identifying the proteins by peptide mass fingerprinting. This paper discusses a recently introduced method based on retention time prediction to extract information from chromatographic separations and the applications of this method to protein identification in organisms with small and large genomes.

Place, publisher, year, edition, pages
2004. Vol. 803, no 1, 131-135 p.
Keyword [en]
protein identification, retention time prediction
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Natural Sciences
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URN: urn:nbn:se:uu:diva-150443DOI: 10.1016/j.jchromb.2003.11.007PubMedID: 15026006OAI: oai:DiVA.org:uu-150443DiVA: diva2:407405
Available from: 2011-03-30 Created: 2011-03-30 Last updated: 2017-12-11Bibliographically approved

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Ramström, MargaretaBergquist, Jonas

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