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Bioclipse-R: Integrating management and visualization of life science data with statistical analysis
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.ORCID iD: 0000-0002-8083-2864
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.
Global Safety Assesment, AstraZeneca R&D.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.
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2013 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811, Vol. 29, no 2, 286-289 p.Article in journal (Refereed) Published
Abstract [en]

Bioclipse, a graphical workbench for the life sciences, provides functionality for managing and visualizing life science data. We introduce Bioclipse-R, which integrates Bioclipse and the statistical programming language R. The synergy between Bioclipse and R is demonstrated by the construction of a decision support system for anticancer drug screening and mutagenicity prediction, which shows how Bioclipse-R can be used to perform complex tasks from within a single software system.

Place, publisher, year, edition, pages
Oxford University Press, 2013. Vol. 29, no 2, 286-289 p.
Keyword [en]
bioclipse, bioinformatics, data analysis
National Category
Bioinformatics and Systems Biology Bioinformatics (Computational Biology)
Research subject
Bioinformatics
Identifiers
URN: urn:nbn:se:uu:diva-187432DOI: 10.1093/bioinformatics/bts681ISI: 000313722800026PubMedID: 23178637OAI: oai:DiVA.org:uu-187432DiVA: diva2:574678
Funder
eSSENCE - An eScience CollaborationSwedish Research Council, 2011-6129
Available from: 2012-12-06 Created: 2012-12-06 Last updated: 2017-12-07Bibliographically approved

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Publisher's full textPubMedhttp://bioinformatics.oxfordjournals.org/content/early/2012/11/23/bioinformatics.bts681.long

Authority records BETA

Spjuth, OlaGeorgiev, ValentinAlvarsson, JonathanBerg, ArvidWikberg, Jarl E SEklund, Martin

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