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PCR-based isolation of multigene families: Lessons from the avian MHC class IIB.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Evolutionary Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Evolutionary Biology.
2014 (English)In: Molecular Ecology Resources, ISSN 1755-098X, E-ISSN 1755-0998, Vol. 14, no 4, 778-788 p.Article in journal (Refereed) Published
Abstract [en]

The amount of sequence data available today highly facilitates the access to genes from many gene families. Primers amplifying the desired genes over a range of species are readily obtained by aligning conserved gene regions, and laborious gene isolation procedures can often be replaced by quicker PCR-based approaches. However, in the case of multigene families, PCR-based approaches bear the often ignored risk of incomplete isolation of family members. This problem is most prominent in gene families with highly variable and thus unpredictable number of gene copies among species, such as in the major histocompatibility complex (MHC). In the present study we (i) report new primers for the isolation of the MHC class IIB (MHCIIB) gene family in birds, and (ii) share our experience with isolating MHCIIB genes from an unprecedented number of avian species from all over the avian phylogeny. We report important and usually underappreciated problems encountered during PCR-based multigene family isolation, and provide a collection of measures to help significantly improving the chance of successfully isolating complete multigene families using PCR-based approaches.

Place, publisher, year, edition, pages
2014. Vol. 14, no 4, 778-788 p.
National Category
Evolutionary Biology
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URN: urn:nbn:se:uu:diva-217907DOI: 10.1111/1755-0998.12234ISI: 000337611400011PubMedID: 24479469OAI: oai:DiVA.org:uu-217907DiVA: diva2:694241
Note

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Available from: 2014-02-06 Created: 2014-02-05 Last updated: 2017-12-06Bibliographically approved

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