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NGS data management and analysis for hundreds of projects: Experiences from Sweden
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0002-8083-2864
2013 (English)In: NGS Data after the Gold Rush, 2013Conference paper, Oral presentation with published abstract (Other academic)
Abstract [en]

UPPNEX is a national e-infrastructure for next-generation sequencing data storage and analysis in Sweden. This presentation features strategic decisions made regarding hardware, software, maintenance and support, resource allocation, and illustrate challenges such as managing data growth in a shared system with over 400 research projects of varying types. Insights into bioinformatics usage patterns are also presented, together with the ongoing development to extend the e-infrastructure with redundant resources, a secure system for analyzing sensitive data, and a private cloud. 

Place, publisher, year, edition, pages
2013.
Series
EMBNet.journal, ISSN 2226-6089 ; 20
National Category
Bioinformatics (Computational Biology)
Research subject
Bioinformatics
Identifiers
URN: urn:nbn:se:uu:diva-242919DOI: 10.14806/ej.20.A.761OAI: oai:DiVA.org:uu-242919DiVA: diva2:785406
Conference
NGS Data after the Gold Rush
Funder
Science for Life Laboratory - a national resource center for high-throughput molecular bioscienceeSSENCE - An eScience Collaboration
Available from: 2015-02-02 Created: 2015-02-02 Last updated: 2015-02-02

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Publisher's full texthttp://journal.embnet.org/index.php/embnetjournal/article/view/761

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Spjuth, Ola

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