Simulated single molecule microscopy with SMeagol
2016 (English)In: Bioinformatics, ISSN 1367-4803, E-ISSN 1367-4811Article in journal (Refereed) Epub ahead of print
Summary: SMeagol is a software tool to simulate highly realistic microscopy data based on spatial systems biology models, in order to facilitate development, validation and optimization of advanced analysis methods for live cell single molecule microscopy data.
Availability and implementation: SMeagol runs on Matlab R2014 and later, and uses compiled binaries in C for reaction–diffusion simulations. Documentation, source code and binaries for Mac OS, Windows and Ubuntu Linux can be downloaded from http://smeagol.sourceforge.net.
Place, publisher, year, edition, pages
single particle tracking, microscopy, simulations
Research subject Biology; Physics with specialization in Biophysics
IdentifiersURN: urn:nbn:se:uu:diva-282965DOI: 10.1093/bioinformatics/btw109OAI: oai:DiVA.org:uu-282965DiVA: diva2:917966
FundereSSENCE - An eScience CollaborationEU, European Research Council, 616047Swedish Research CouncilKnut and Alice Wallenberg FoundationSwedish Foundation for Strategic Research