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The Uppsala Electron-Density Server
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Structural Molecular Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Structural Molecular Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Structural Molecular Biology.
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Structural Molecular Biology.
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2004 (English)In: Acta Crystallographica Section D: Biological Crystallography, ISSN 0907-4449, E-ISSN 1399-0047, Vol. 60, no Pt 12 Pt 1, 2240-2249 p.Article in journal (Refereed) Published
Abstract [en]

The Uppsala Electron Density Server (EDS; http://eds.bmc.uu.se/) is a web-based facility that provides access to electron-density maps and statistics concerning the fit of crystal structures and their maps. Maps are available for approximately 87% of the crystallographic Protein Data Bank (PDB) entries for which structure factors have been deposited and for which straightforward map calculations succeed in reproducing the published R value to within five percentage points. Here, an account is provided of the methods that are used to generate the information contained in the server. Some of the problems that are encountered in the map-generation process as well as some spin-offs of the project are also discussed.

Place, publisher, year, edition, pages
2004. Vol. 60, no Pt 12 Pt 1, 2240-2249 p.
Keyword [en]
Computational Biology, Crystallography; X-Ray, Databases; Protein, Electrons, Internet, Proteins/chemistry, Reproducibility of Results, Research Support; Non-U.S. Gov't, Software, Temperature
National Category
Natural Sciences
Identifiers
URN: urn:nbn:se:uu:diva-71671PubMedID: 15572777OAI: oai:DiVA.org:uu-71671DiVA: diva2:99582
Available from: 2006-12-15 Created: 2006-12-15 Last updated: 2017-11-21Bibliographically approved

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Kleywegt, Gerard JHarris, Mark R

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