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  • 1.
    Ahi, Ehsan Pashay
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology. Univ Helsinki, Organismal & Evolutionary Biol Res Programme, Helsinki, Finland..
    Brunel, Mathilde
    Swedish Univ Agr Sci, Dept Mol Sci, Uppsala, Sweden..
    Tsakoumis, Emmanouil
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Chen, Junyu
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology.
    Schmitz, Monika
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Appetite regulating genes in zebrafish gut; a gene expression study2022In: PLOS ONE, E-ISSN 1932-6203, Vol. 17, no 7, article id e0255201Article in journal (Refereed)
    Abstract [en]

    The underlying molecular pathophysiology of feeding disorders, particularly in peripheral organs, is still largely unknown. A range of molecular factors encoded by appetite-regulating genes are already described to control feeding behaviour in the brain. However, the important role of the gastrointestinal tract in the regulation of appetite and feeding in connection to the brain has gained more attention in the recent years. An example of such inter-organ connection can be the signals mediated by leptin, a key regulator of body weight, food intake and metabolism, with conserved anorexigenic effects in vertebrates. Leptin signals functions through its receptor (lepr) in multiple organs, including the brain and the gastrointestinal tract. So far, the regulatory connections between leptin signal and other appetite-regulating genes remain unclear, particularly in the gastrointestinal system. In this study, we used a zebrafish mutant with impaired function of leptin receptor to explore gut expression patterns of appetite-regulating genes, under different feeding conditions (normal feeding, 7-day fasting, 2 and 6-hours refeeding). We provide evidence that most appetite-regulating genes are expressed in the zebrafish gut. On one hand, we did not observed significant differences in the expression of orexigenic genes (except for hcrt) after changes in the feeding condition. On the other hand, we found 8 anorexigenic genes in wild-types (cart2, cart3, dbi, oxt, nmu, nucb2a, pacap and pomc), as well as 4 genes in lepr mutants (cart3, kiss1, kiss1r and nucb2a), to be differentially expressed in the zebrafish gut after changes in feeding conditions. Most of these genes also showed significant differences in their expression between wild-type and lepr mutant. Finally, we observed that impaired leptin signalling influences potential regulatory connections between anorexigenic genes in zebrafish gut. Altogether, these transcriptional changes propose a potential role of leptin signal in the regulation of feeding through changes in expression of certain anorexigenic genes in the gastrointestinal tract of zebrafish.

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  • 2.
    Ahmerkamp, Soeren
    et al.
    Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany..
    Jalaluddin, Farooq Moin
    Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany..
    Cui, Yuan
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Uppsala University, Science for Life Laboratory, SciLifeLab.
    Brumley, Douglas R.
    Univ Melbourne, Sch Math & Stat, Parkville, Vic 3010, Australia..
    Pacherres, Cesar O.
    Alfred Wegener Inst, Helmholtz Ctr Polar & Marine Res, Bremerhaven, Germany.;Univ Copenhagen, Dept Biol, Copenhagen, Denmark..
    Berg, Jasmine S.
    Univ Lausanne, Inst Earth Surface Dynam, CH-1015 Lausanne, Switzerland..
    Stocker, Roman
    Swiss Fed Inst Technol, Dept Civil Environm & Geomat Engn, Inst Environm Engn, CH-8093 Zurich, Switzerland..
    Kuypers, Marcel M. M.
    Max Planck Inst Marine Microbiol, D-28359 Bremen, Germany..
    Koren, Klaus
    Aarhus Univ, Ctr Water Technol, Dept Biol, DK-8000 Aarhus, Denmark..
    Behrendt, Lars
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems2022In: CELL REPORTS METHODS, ISSN 2667-2375, Vol. 2, no 5, article id 100216Article in journal (Refereed)
    Abstract [en]

    From individual cells to whole organisms, O-2 transport unfolds across micrometer- tomillimeter-length scales and can change within milliseconds in response to fluid flows and organismal behavior. The spatiotemporal complexity of these processes makes the accurate assessment of O-2 dynamics via currently availablemethods difficult or unreliable. Here, we present "sensPIV,'' a method to simultaneously measure O-2 concentrations and flow fields. By tracking O-2-sensitive microparticles in flow using imaging technologies that allow for instantaneous referencing, wemeasuredO(2) transportwithin (1) microfluidic devices, (2) sinkingmodel aggregates, and (3) complex colony-forming corals. Through the use of sensPIV, we find that corals use ciliarymovement to link zones of photosynthetic O-2 production to zones of O-2 consumption. SensPIV can potentially be extendable to study flow-organism interactions across many life-science and engineering applications.

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  • 3.
    Akgül, Özge
    et al.
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Izmir Democracy Univ, Dept Psychol, Fac Arts & Sci, Izmir, Turkiye..
    Fide, Ezgi
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;York Univ, Fac Hlth, Dept Psychol, Toronto, ON, Canada..
    Özel, Fatih
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye.
    Alptekin, Köksal
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Bora, Emre
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Akdede, Berna Binnur
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Yener, Görsev
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Brain Dynam Multidisciplinary Res Ctr, Izmir, Turkiye.;Dokuz Eylul Univ, Izmir Int Biomed & Genome Inst, Izmir, Turkiye.;Izmir Univ Econ, Fac Med, Dept Neurol, Izmir, Turkiye..
    Early and late contingent negative variation (CNV) reflect different aspects of deficits in schizophrenia2024In: European Journal of Neuroscience, ISSN 0953-816X, E-ISSN 1460-9568, Vol. 59, no 11, p. 2875-2889Article in journal (Refereed)
    Abstract [en]

    Abnormal reward processing and psychomotor slowing are well-known in schizophrenia (SZ). As a slow frontocentral potential, contingent negative variation (CNV) is associated with anticipatory attention, motivation and motor planning. The present study aims to evaluate the early and late amplitude and latencies of CNV in patients with SZ compared to healthy controls during a reward processing task and to show its association with clinical symptoms. We recruited 21 patients with SZ and 22 healthy controls to compare early and late CNV amplitude and latency values during a Monetary Incentive Delay (MID) Task between groups. Patients' symptom severity, levels of negative symptoms and depressive symptoms were assessed. Clinical features of the patients were further examined for their relation with CNV components. In conclusion, we found decreased early CNV amplitudes in SZ during the reward condition. They also displayed diminished and shortened late CNV responses for incentive cues, specifically at the central location. Furthermore, early CNV amplitudes exhibited a significant correlation with positive symptoms. Both CNV latencies were linked with medication dosage and the behavioural outcomes of the MID task. We revealed that early and late CNV exhibit different functions in neurophysiology and correspond to various facets of the deficits observed in patients. Our findings also emphasized that slow cortical potentials are indicative of deficient motivational processes as well as impaired reaction preparation in SZ. To gain a deeper understanding of the cognitive and motor impairments associated with psychosis, future studies must compare the effects of CNV in the early and late phases.

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  • 4.
    Akgül, Özge
    et al.
    Izmir Democracy Univ, Fac Arts & Sci, Dept Psychol, Izmir, Turkiye..
    Fide, Ezgi
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye..
    Özel, Fatih
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Alptekin, Köksal
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Bora, Emre
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Akdede, Berna Binnur
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Yener, Görsev
    Dokuz Eylul Univ, Brain Dynam Multidisciplinary Res Ctr, Izmir, Turkiye.;Izmir Univ Econ, Fac Med, Dept Neurol, Izmir, Turkiye.;Dokuz Eylul Univ, Izmir Int Biomed & Genome Inst, Izmir, Turkiye.;Izmir Univ Econ, Fac Med, Dept Neurol, TR-35340 Izmir, Turkiye..
    Enhanced Punishment Responses in Patients With Schizophrenia: An Event-Related Potential Study2024In: Clinical EEG and Neuroscience, ISSN 1550-0594, E-ISSN 2169-5202, Vol. 55, no 2, p. 219-229Article in journal (Refereed)
    Abstract [en]

    It is well known that abnormal reward processing is a characteristic feature of various psychopathologies including schizophrenia. Reduced reward anticipation has been suggested as a core symptom of schizophrenia. The Monetary Incentive Delay Task (MID) is frequently used to detect reward anticipation. The present study aims to evaluate the amplitude and latency of event-related potential (ERP) P300 in patients with schizophrenia (SCH) compared to healthy controls during the MID task. Twenty patients with SCH and 21 demographically matched healthy controls (HC) were included in the study. ERP P300 amplitude and latency values were compared between groups using an MID task in which reward and loss cues were presented. Relations between P300 and clinical facets were investigated in the patient group. SCH group had enhanced mean P300 amplitudes and delayed peak latency in the punishment condition compared with HC. These higher responses were also associated with negative symptoms. SCH group showed altered reward processing as being more sensitive to loss of reward conditions as firstly evidenced by electrophysiological methods, possibly due to abnormality in various systems including social withdrawal, social defeat, and behavioral inhibition system.

  • 5.
    Akgül, Özge
    et al.
    Izmir Democracy Univ, Dept Psychol, Fac Arts & Sci, Izmir, Turkiye..
    Fide, Ezgi
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye..
    Özel, Fatih
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Alptekin, Köksal
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Bora, Emre
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Akdede, Berna Binnur
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Dokuz Eylul Univ, Fac Med, Dept Psychiat, Izmir, Turkiye..
    Yener, Görsev
    Dokuz Eylul Univ, Dept Neurosci, Izmir, Turkiye.;Izmir Univ Econ, Fac Med, Dept Anat, Izmir, Turkiye.;Izmir Int Biomed & Genome Inst, Izmir, Turkiye..
    Reduced Reward Processing in Schizophrenia: A Comprehensive EEG Event-Related Oscillation Study2024In: Brain Topography, ISSN 0896-0267, E-ISSN 1573-6792, Vol. 37, no 1, p. 126-137Article in journal (Refereed)
    Abstract [en]

    It is well known that abnormal reward processing is a characteristic feature of various psychopathologies including schizophrenia (SZ). Reduced reward anticipation has been suggested as a core symptom of SZ. The present study aims to evaluate the event-related oscillations (EROs) delta, theta, alpha, beta, and gamma in patients with SZ during the Monetary Incentive Delay (MID) task, which elicits the neural activity of reward processing. Twenty-one patients with SZ and twenty-two demographically matched healthy controls were included in the study. EROs were compared between groups and correlation analyses were conducted to determine a possible relationship between clinical scores and ERO values. Compared with healthy controls, the SZ group had reduced (1) delta and theta amplitudes in the reward condition (2) total beta and non-incentive cue-related beta amplitudes, and (3) incentive cue-related frontal gamma amplitudes. These reductions can be interpreted as impaired dopaminergic neurotransmission and disrupted cognitive functioning in the reward processing of SZ. In contrast, SZ patients showed higher incentive cue-related theta and occipital gamma amplitudes compared to controls. These increments may reflect negative symptoms in SZ. Moreover, theta amplitudes showed a negative correlation with Calgary Depression Scale for Schizophrenia scores and a positive correlation with attentional impulsivity. This is the first study showing the impairments of SZ patients in EROs from delta to gamma frequency bands compared with healthy controls during reward anticipation. Being the first comprehensive study, our results can be interpreted as providing evidence for disrupted brain dynamics in the reward processing of SZ studied by EROs. It may become possible to help patients' wellness by improving our understanding of reward processing in schizophrenia and developing innovative rehabilitation treatments based on these findings.

  • 6. Allorent, Guillaume
    et al.
    Petroutsos, Dimitris
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Photoreceptor-dependent regulation of photoprotection2017In: Current opinion in plant biology, ISSN 1369-5266, E-ISSN 1879-0356, Vol. 37, p. 102-108Article in journal (Refereed)
    Abstract [en]

    In photosynthetic organisms, proteins in the light-harvesting complex (LHC) harvest light energy to fuel photosynthesis, whereas photoreceptor proteins are activated by the different wavelengths of the light spectrum to regulate cellular functions. Under conditions of excess light, blue-light photoreceptors activate chloroplast avoidance movements in sessile plants, and blue- and green-light photoreceptors cause motile algae to swim away from intense light. Simultaneously, LHCs switch from light-harvesting mode to energy-dissipation mode, which was thought to be independent of photoreceptor-signaling up until recently. Recent advances, however, indicate that energy dissipation in green algae is controlled by photoreceptors activated by blue and UV-B light, and new molecular links have been established between photoreception and photoprotection.

  • 7.
    Audouze, Karine
    et al.
    Univ Paris, T3S, Inserm U1124, Paris, France..
    Zgheib, Elias
    Univ Paris, T3S, Inserm U1124, Paris, France..
    Abass, Khaled
    Univ Oulu, Univ Arctic, Thule Inst, Oulu, Finland.;Menoufia Univ, Dept Pesticides, Menoufia, Egypt..
    Baig, Asma H.
    Brunel Univ London, Ctr Pollut Res & Policy, Uxbridge, England..
    Forner-Piquer, Isabel
    Brunel Univ London, Ctr Pollut Res & Policy, Uxbridge, England..
    Holbech, Henrik
    Univ Southern Denmark, Dept Biol, Odense, Denmark..
    Knapen, Dries
    Univ Antwerp, Dept Vet Sci, Zebrafishlab, Antwerp, Belgium..
    Leonards, Pim E. G.
    Vrije Univ Amsterdam, Dept Environm & Hlth, Amsterdam, Netherlands..
    Lupu, Diana I.
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Palaniswamy, Saranya
    Univ Oulu, Fac Med, Ctr Life Course Hlth Res, Oulu, Finland..
    Rautio, Arja
    Univ Oulu, Univ Arctic, Thule Inst, Oulu, Finland..
    Sapounidou, Maria
    Umeå Univ, Fac Sci & Technol, Dept Chem, Umeå, Sweden..
    Martin, Olwenn V.
    Brunel Univ London, Ctr Pollut Res & Policy, Uxbridge, England..
    Evidenced-Based Approaches to Support the Development of Endocrine-Mediated Adverse Outcome Pathways: Challenges and Opportunities2021In: Frontiers in Toxicology, E-ISSN 2673-3080, Vol. 3, article id 787017Article in journal (Refereed)
    Abstract [en]

    A transformation of regulatory toxicology is underway to meet the demands of testing increasing numbers of chemicals whilst reducing reliance on in vivo models. This transformation requires a shift from chemical safety assessment largely based on direct empirical observation of apical toxicity outcomes in whole organisms to predictive approaches in which outcomes and risks are inferred from accumulated mechanistic understanding. 

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  • 8. Bailleul, Benjamin
    et al.
    Berne, Nicolas
    Murik, Omer
    Petroutsos, Dimitris
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Prihoda, Judit
    Tanaka, Atsuko
    Villanova, Valeria
    Bligny, Richard
    Flori, Serena
    Falconet, Denis
    Krieger-Liszkay, Anja
    Santabarbara, Stefano
    Rappaport, Fabrice
    Joliot, Pierre
    Tirichine, Leila
    Falkowski, Paul G
    Cardol, Pierre
    Bowler, Chris
    Finazzi, Giovanni
    Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.2015In: Nature, ISSN 0028-0836, E-ISSN 1476-4687, Vol. 524, no 7565, p. 366-9Article in journal (Refereed)
    Abstract [en]

    Diatoms are one of the most ecologically successful classes of photosynthetic marine eukaryotes in the contemporary oceans. Over the past 30 million years, they have helped to moderate Earth's climate by absorbing carbon dioxide from the atmosphere, sequestering it via the biological carbon pump and ultimately burying organic carbon in the lithosphere. The proportion of planetary primary production by diatoms in the modern oceans is roughly equivalent to that of terrestrial rainforests. In photosynthesis, the efficient conversion of carbon dioxide into organic matter requires a tight control of the ATP/NADPH ratio which, in other photosynthetic organisms, relies principally on a range of plastid-localized ATP generating processes. Here we show that diatoms regulate ATP/NADPH through extensive energetic exchanges between plastids and mitochondria. This interaction comprises the re-routing of reducing power generated in the plastid towards mitochondria and the import of mitochondrial ATP into the plastid, and is mandatory for optimized carbon fixation and growth. We propose that the process may have contributed to the ecological success of diatoms in the ocean.

  • 9.
    Botte, Ermes
    et al.
    University of Pisa, Research Centre "E. Piaggio", Pisa, Italy;Department of Information Engineering, University of Pisa, Pisa, Italy.
    Cui, Yuan
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Magliaro, Magliaro
    University of Pisa, Research Centre "E. Piaggio", Pisa, Italy;Department of Information Engineering, University of Pisa, Pisa, Italy .
    Tenje, Maria
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Koren, Klaus
    Aarhus University Centre for Water Technology, Department of Biology, Aahrus University, 8000 Aarhus, Denmark.
    Rinaldo, Andrea
    Laboratory of Ecohydrology ECHO/IIE/ENAC, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland;Department of Civil, Environmental and Architectural Engineering, University of Padova, Padova, Italy.
    Stocker, Roman
    Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland.
    Behrendt, Lars
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Uppsala University, Science for Life Laboratory, SciLifeLab.
    Ahluwalia, Arti
    University of Pisa, Research Centre "E. Piaggio", Pisa, Italy;Department of Information Engineering, University of Pisa, Pisa, Italy.
    Size-related variability of oxygen consumption rates in individual human hepatic cells2024In: Lab on a Chip, ISSN 1473-0197, E-ISSN 1473-0189, Vol. 24, no 17, p. 4128-4137Article in journal (Refereed)
    Abstract [en]

    Accurate descriptions of the variability in single-cell oxygen consumption and its size-dependency are key to establishingmore robust tissue models. By combining microfabricated devices with multiparameter identification algorithms, wedemonstrate that single human hepatocytes exhibit an oxygen level-dependent consumption rate and that their maximaloxygen consumption rate is significantly lower than that of typical hepatic cell cultures. Moreover, we found that clusters oftwo or more cells competing for a limited oxygen supply reduced their maximal consumption rate, highlighting their abilityto adapt to local resource availability and the presence of nearby cells. We used our approach to characterize the covarianceof size and oxygen consumption rate within a cell population, showing that size matters, since oxygen metabolism covarieslognormally with cell size. Our study paves the way for linking the metabolic activity of single human hepatocytes to theirtissue- or organ-level metabolism and describing its size-related variability through scaling laws.

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  • 10. Boudière, Laurence
    et al.
    Michaud, Morgane
    Petroutsos, Dimitris
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Rébeillé, Fabrice
    Falconet, Denis
    Bastien, Olivier
    Roy, Sylvaine
    Finazzi, Giovanni
    Rolland, Norbert
    Jouhet, Juliette
    Block, Maryse A
    Maréchal, Eric
    Glycerolipids in photosynthesis: composition, synthesis and trafficking.2014In: Biochimica et Biophysica Acta, ISSN 0006-3002, E-ISSN 1878-2434, Vol. 1837, no 4, p. 470-80, article id S0005-2728(13)00163-1Article in journal (Refereed)
    Abstract [en]

    Glycerolipids constituting the matrix of photosynthetic membranes, from cyanobacteria to chloroplasts of eukaryotic cells, comprise monogalactosyldiacylglycerol, digalactosyldiacylglycerol, sulfoquinovosyldiacylglycerol and phosphatidylglycerol. This review covers our current knowledge on the structural and functional features of these lipids in various cellular models, from prokaryotes to eukaryotes. Their relative proportions in thylakoid membranes result from highly regulated and compartmentalized metabolic pathways, with a cooperation, in the case of eukaryotes, of non-plastidic compartments. This review also focuses on the role of each of these thylakoid glycerolipids in stabilizing protein complexes of the photosynthetic machinery, which might be one of the reasons for their fascinating conservation in the course of evolution. This article is part of a Special Issue entitled: Dynamic and ultrastructure of bioenergetic membranes and their components.

  • 11.
    Brustenga, Leonardo
    et al.
    Univ Perugia, Dept Vet Med, Via San Costanzo 4, I-06126 Perugia, Italy.;Univ Perugia, Dept Chem Biol & Biotechnol, Via Giochetto 13A, I-06122 Perugia, Italy..
    Marini, Daniele
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Univ Perugia, Dept Vet Med, Via San Costanzo 4, I-06126 Perugia, Italy.
    Guarino, Fabio Maria
    Univ Naples Federico II, Dept Biol, Via Cinthia 26, I-80134 Naples, Italy..
    Lucentini, Lima
    Univ Perugia, Dept Chem Biol & Biotechnol, Via Giochetto 13A, I-06122 Perugia, Italy..
    Davian behaviour and functional egg fertilization in the Italian Stream Frog Rana italica (Anura: Ranidae)2024In: Salamandra: German Journal of Herpetology, ISSN 0036-3375, Vol. 60, no 4, p. 297-301Article in journal (Other academic)
  • 12.
    Bylund, Jonatan
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    Cre-driven reporter gene analysis of parvalbumin and vesicular glutamate transporter 2 in the mouse brain and their internal distribution within subthalamic areas2022Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
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  • 13.
    Cediel Ulloa, Andrea
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Lindner, Sabrina
    Lund Univ, Dept Lab Med, Div Occupat & Environm Med, Lund, Sweden..
    Rüegg, Joëlle
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Broberg, Karin
    Lund Univ, Dept Lab Med, Div Occupat & Environm Med, Lund, Sweden.;Karolinska Inst, Inst Environm Med, Stockholm, Sweden.;Karolinska Inst, Inst Environm Med, Box 210, SE-17177 Stockholm, Sweden..
    Epigenetics of methylmercury2023In: Neurotoxicology, ISSN 0161-813X, E-ISSN 1872-9711, Vol. 97, p. 34-46Article in journal (Refereed)
    Abstract [en]

    Purpose of review: Methylmercury (MeHg) is neurotoxic at high levels and particularly affects the developing brain. One proposed mechanism of MeHg neurotoxicity is alteration of the epigenetic programming. In this review, we summarise the experimental and epidemiological literature on MeHg-associated epigenetic changes.

    Recent findings: Experimental and epidemiological studies have identified changes in DNA methylation following in utero exposure to MeHg, and some of the changes appear to be persistent. A few studies have evaluated associations between MeHg-related changes in DNA methylation and neurodevelopmental outcomes. Experimental studies reveal changes in histone modifications after MeHg exposure, but we lack epidemiological studies supporting such changes in humans. Experimental and epidemiological studies have identified microRNA-related changes associated with MeHg; however, more research is needed to conclude if these changes lead to persistent and toxic effects.

    Summary: MeHg appears to interfere with epigenetic processes, potentially leading to persistent changes. However, observed associations of mercury with epigenetic changes are as of yet of unknown relevance to neurodevelopmental outcomes.

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  • 14.
    Cediel-Ulloa, Andrea
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Novel Endpoints To Unravel Developmental Neurotoxicity: From DNA methylation responses to methylmercury to the in vitro identification of endocrine disruptors2024Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    The developing brain is especially sensitive to environmental stressors due to its dependence on the precise spatiotemporal regulation of multiple signals, and the long time period required for its formation. Some chemicals can interfere with molecular and cellular processes driving brain development, including epigenetic processes such as DNA methylation. Hence, identification of DNA methylation changes induced by chemical exposure may serve as early molecular markers for developmental neurotoxicity (DNT). Chemicals known as endocrine disruptors (EDCs) can produce adverse effects due to their capability to alter the endocrine system. Since brain development is highly dependent on endocrine signals, the potential adverse effects of EDCs on brain development needs to be addressed. Detection of DNT in the regulatory context has been based on in vivo testing, however, the financial costs and time intensive characteristics of these methods have resulted in a limited assessment of the DNT hazard of chemicals. In addition, in order to regulate EDCs, it is paramount to demonstrate that their adverse effects are a product of disruption of endocrine signals. Yet, at the moment, there are no approved methods which address both an endocrine mode of action and adverse neurodevelopmental outcomes. This doctoral thesis had two main aims: Firstly, to identify epigenetic changes, at the level of DNA methylation, underlying DNT induced by exposure to methylmercury (MeHg); and secondly, to develop new approach methods (NAMs) for the detection of DNT induced by endocrine disruption. Epigenetic effects were studied both in epidemiological data and experimentally in vitro. Associations between prenatal MeHg exposure and DNA methylation of GRIN2B and NR3C1 were found in children. In vitro validation of DNA methylation changes found in epigenome-wide association studies of populations exposed to MeHg, uncovered the potential involvement of the Mediator Complex Subunit 31 (MED31) in MeHg DNT. To contribute to the endocrine disruption (ED)-induced DNT field, the applicability of an in vitro model composed of murine neural progenitor cells (the C17.2 cell-line) was evaluated. We found that C17.2 neural differentiation and morphology were sensitive to retinoic acid (RAR), retinoic X (RXR), peroxisome proliferator-activated β/δ (PPARβ/δ), and glucocorticoid (GR) agonism. Furthermore, two out of 25 tested EDCs decreased neurite outgrowth and branching in the C17.2 system. These effects were recovered by co-exposure of the chemicals with antagonists of RAR, RXR, or PPARβ/δ, indicating that their DNT effect is mediated by hormonal disruption. Altogether, this thesis contributed to the development of new methodologies and endpoints for the assessment of DNT induced by MeHg and EDCs.  

    List of papers
    1. Prenatal methylmercury exposure and DNA methylation in seven-year-old children in the Seychelles Child Development Study
    Open this publication in new window or tab >>Prenatal methylmercury exposure and DNA methylation in seven-year-old children in the Seychelles Child Development Study
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    2021 (English)In: Environment International, ISSN 0160-4120, E-ISSN 1873-6750, Vol. 147, article id 106321Article in journal (Refereed) Published
    Abstract [en]

    Background

    Methylmercury (MeHg) is present in fish and is a neurotoxicant at sufficiently high levels. One potential mechanism of MeHg toxicity early in life is epigenetic dysregulation that may affect long-term neurodevelopment. Altered DNA methylation of nervous system-related genes has been associated with adult mental health outcomes.

    Objective

    To assess associations between prenatal MeHg exposure and DNA methylation (at the cytosine of CG dinucleotides, CpGs) in three nervous system-related genes, encoding brain-derived neurotropic factor (BDNF), glutamate receptor subunit NR2B (GRIN2B), and the glucocorticoid receptor (NR3C1), in children who were exposed to MeHg in utero.

    Methods

    We tested 406 seven-year-old Seychellois children participating in the Seychelles Child Development Study (Nutrition Cohort 2), who were prenatally exposed to MeHg from maternal fish consumption. Total mercury in maternal hair (prenatal MeHg exposure measure) collected during pregnancy was measured using atomic absorption spectroscopy. Methylation in DNA from the children’s saliva was measured by pyrosequencing. To assess associations between prenatal MeHg exposure and CpG methylation at seven years of age, we used multivariable linear regression models adjusted for covariates.

    Results

    We identified associations with prenatal MeHg exposure for DNA methylation of one GRIN2B CpG and two NR3C1 CpGs out of 12 total CpG sites. Higher prenatal MeHg was associated with higher methylation for each CpG site. For example, NR3C1 CpG3 had an expected increase of 0.03-fold for each additional 1 ppm of prenatal MeHg (B = 0.030, 95% CI 0.001, 0.059; p = 0.047). Several CpG sites associated with MeHg are located in transcription factor binding sites and the observed methylation changes are predicted to lead to lower gene expression.

    Conclusions

    In a population of people who consume large amounts of fish, we showed that higher prenatal MeHg exposure was associated with differential DNA methylation at seven years of age at specific CpG sites that may influence neurodevelopment and mental health.

    Place, publisher, year, edition, pages
    Elsevier, 2021
    Keywords
    Methylmercury, MeHg, Epigenetic, DNA methylation, Neurodevelopment, Fish consumption, Early life
    National Category
    Medical Genetics Occupational Health and Environmental Health
    Identifiers
    urn:nbn:se:uu:diva-435974 (URN)10.1016/j.envint.2020.106321 (DOI)000613512700006 ()33340986 (PubMedID)
    Funder
    Swedish Research Council FormasNIH (National Institute of Health), R01-ES010219NIH (National Institute of Health), P30-ES01247
    Available from: 2021-06-30 Created: 2021-06-30 Last updated: 2024-03-14Bibliographically approved
    2. Methylmercury-induced DNA methylation-From epidemiological observations to experimental evidence
    Open this publication in new window or tab >>Methylmercury-induced DNA methylation-From epidemiological observations to experimental evidence
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    2022 (English)In: Frontiers in Genetics, E-ISSN 1664-8021, Vol. 13, article id 993387Article in journal (Refereed) Published
    Abstract [en]

    Methylmercury (MeHg) is a developmental neurotoxicant, and one potential mechanism of MeHg toxicity is epigenetic dysregulation. In a recent meta-analysis of epigenome-wide association studies (EWAS), associations between prenatal MeHg exposure and DNA methylation at several genomic sites were identified in blood from newborns and children. While EWASs reveal human-relevant associations, experimental studies are required to validate the relationship between exposure and DNA methylation changes, and to assess if such changes have implications for gene expression. Herein, we studied DNA methylation and gene expression of five of the top genes identified in the EWAS meta-analysis, MED31, MRPL19, GGH, GRK1, and LYSMD3, upon MeHg exposure in human SH-SY5Y cells exposed to 8 or 40 nM of MeHg during differentiation, using bisulfite-pyrosequencing and qPCR, respectively. The concentrations were selected to cover the range of MeHg concentrations in cord blood (2-8.5 mu g/L) observed in the cohorts included in the EWAS. Exposure to MeHg increased DNA methylation at MED31, a transcriptional regulator essential for fetal development. The results were in concordance with the epidemiological findings where more MED31 methylation was associated with higher concentrations of MeHg. Additionally, we found a non-significant decrease in DNA methylation at GGH, which corresponds to the direction of change observed in the EWAS, and a significant correlation of GGH methylation with its expression. In conclusion, this study corroborates some of the EWAS findings and puts forward candidate genes involved in MeHg's effects on the developing brain, thus highlighting the value of experimental validation of epidemiological association studies.

    Place, publisher, year, edition, pages
    Frontiers Media S.A., 2022
    Keywords
    methyl mercury (MeHg), neurodevelopment, epigenome wide association study, DNA methylation, SH-SY5Y cell line
    National Category
    Medical Genetics
    Identifiers
    urn:nbn:se:uu:diva-486701 (URN)10.3389/fgene.2022.993387 (DOI)000861603100001 ()36176303 (PubMedID)
    Funder
    Swedish Research Council, 2016-02387Swedish Fund for Research Without Animal Experiments, F2019-0009Swedish Fund for Research Without Animal Experiments, F2020-0006EU, Horizon 2020, 825759
    Available from: 2022-10-14 Created: 2022-10-14 Last updated: 2024-03-14Bibliographically approved
    3. The C17.2 cell line as testing system for endocrine disruption-induced developmental neurotoxicity
    Open this publication in new window or tab >>The C17.2 cell line as testing system for endocrine disruption-induced developmental neurotoxicity
    Show others...
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Hormone signaling plays an essential role during fetal life and is vital for brain development. Endocrine-disrupting chemicals (EDCs) can interfere with the hormonal milieu in this critical time period, disrupting key neurodevelopmental processes. Hence, there is a need for the development of assays that evaluate developmental neurotoxicity (DNT) induced by an endocrine mode of action. Herein, we evaluated the applicability of the neural progenitor C17. 2 cell-line, as an in vitro test method to aid in the detection of endocrine disruption induced DNT. For this, C17.2 cells were exposed during 10 days of differentiation to (ant)agonists of the thyroid hormone (Thr), glucocorticoid (Gr), retinoic acid (Rar), retinoic x (Rxr), oxysterols (Lxr), estrogen (Er), androgen (Ar), and peroxisome proliferator activated delta (Ppard) receptors, as well as to the agonist of the vitamin D (Vdr) receptor. Upon exposure and differentiation, the cells were incubated with Hoechst (nuclear staining) and subsequently stained for βIII-tubulin (neuronal marker) by immunofluorescence. Automated imaging was carried out with a 10X objective lens using an ImageXpress micro xls system (Molecular Devices) and image analysis was performed with MetaXpress® software (Molecular Devices). The C17.2 cells were responsive to the Rar and Rxr agonists which decreased neurite outgrowth, branching and neuronal differentiation as well as to the Rar antagonist which increased neurite outgrowth and branching. With this approach, we have identified that the C17.2 cells are responsive to Gr, Rar, Rxr, and Pparβ/δ, hence contributing to the development of reliable and transferable test methods for hazard assessment of EDCs.

    Keywords
    Endocrine disruptors, neurodevelopment, in vitro assay development, retinoic acid, Peroxisome proliferator-activated receptor
    National Category
    Biochemistry and Molecular Biology Cell and Molecular Biology
    Research subject
    Biology with specialization in Environmental Toxicology
    Identifiers
    urn:nbn:se:uu:diva-524945 (URN)
    Funder
    EU, Horizon 2020, 825759
    Available from: 2024-03-14 Created: 2024-03-14 Last updated: 2024-03-14Bibliographically approved
    4. The pesticides endosulfan and cypermethrin affect neuronal differentiation via retinoic and peroxisome proliferator receptor activity
    Open this publication in new window or tab >>The pesticides endosulfan and cypermethrin affect neuronal differentiation via retinoic and peroxisome proliferator receptor activity
    Show others...
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Brain development is highly dependent on hormonal homeostasis, hence developmental exposure to endocrine disrupting chemicals (EDCs) is of high concern. In fact, epidemiological and in vivo studies support associations between exposure to EDCs and impaired neurodevelopment. However, the existing hazard assessment of EDCs does not consider developmental neurotoxicity (DNT) prompting an urgent requirement for innovative testing and screening tools addressing endocrine disruption (ED)-induced DNT. We have previously shown the applicability of the immortalized murine neural progenitor cells, C17.2 cells, for addressing ED-DNT. We evidenced decreased neurite outgrowth and branching when the cells were exposed to the Rar, Rxr or Pparβ/δ agonists, and concluded that this is a suitable model for the evaluation of ED-induced DNT for chemicals disrupting Rar, Rxr or Pparβ/δ signalling. In this study we further validated the C17.2 method by testing the effects of 25 EDCs on the same neuronal morphology endpoints as reported in the previous paper. Out of the tested chemicals, endosulfan and cypermethrin decreased, while benzyl butyl phthalate (BBzP) increased neurite outgrowth and branching. We proceeded to evaluate whether these effects were mediated by Rar, Rxr or Ppar β/δ agonism. The neuronal morphology effects of endosulfan and cypermethrin were rescued by co-exposures Rar and Rxr antagonists, and partially rescued by the Ppar β/δ antagonist indicating a common mechanism. With this approach, we have identified that the C17.2 cells can be used as an in vitro model to address ED-induced DNT.

    Keywords
    Endocrine disruptors, Developmental neurotoxicity, Retinoids, Peroxisome proliferator-activated receptor, in vitro testing
    National Category
    Biochemistry and Molecular Biology
    Research subject
    Biology; Biology with specialization in Environmental Toxicology
    Identifiers
    urn:nbn:se:uu:diva-524946 (URN)
    Available from: 2024-03-14 Created: 2024-03-14 Last updated: 2024-03-14Bibliographically approved
    Download full text (pdf)
    UUThesis_A-Cediel-Ulloa-2024
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  • 15.
    Cediel-Ulloa, Andrea
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Awoga, Roseline
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology. Department of Biochemistry and Biophysics, Stockholm University.
    Dönmez, Arif
    IUF – Leibniz Research Institute for Environmental Medicine, Düsseldorf.
    Yu, Ximiao
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Gliga, Anda
    Institute of Environmental Medicine, Karolinska Institutet.
    Attoff, Kristina
    Department of Biochemistry and Biophysics, Stockholm University.
    Forsby, Anna
    Department of Biochemistry and Biophysics, Stockholm University.
    Rüegg, Joëlle
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    The C17.2 cell line as testing system for endocrine disruption-induced developmental neurotoxicityManuscript (preprint) (Other academic)
    Abstract [en]

    Hormone signaling plays an essential role during fetal life and is vital for brain development. Endocrine-disrupting chemicals (EDCs) can interfere with the hormonal milieu in this critical time period, disrupting key neurodevelopmental processes. Hence, there is a need for the development of assays that evaluate developmental neurotoxicity (DNT) induced by an endocrine mode of action. Herein, we evaluated the applicability of the neural progenitor C17. 2 cell-line, as an in vitro test method to aid in the detection of endocrine disruption induced DNT. For this, C17.2 cells were exposed during 10 days of differentiation to (ant)agonists of the thyroid hormone (Thr), glucocorticoid (Gr), retinoic acid (Rar), retinoic x (Rxr), oxysterols (Lxr), estrogen (Er), androgen (Ar), and peroxisome proliferator activated delta (Ppard) receptors, as well as to the agonist of the vitamin D (Vdr) receptor. Upon exposure and differentiation, the cells were incubated with Hoechst (nuclear staining) and subsequently stained for βIII-tubulin (neuronal marker) by immunofluorescence. Automated imaging was carried out with a 10X objective lens using an ImageXpress micro xls system (Molecular Devices) and image analysis was performed with MetaXpress® software (Molecular Devices). The C17.2 cells were responsive to the Rar and Rxr agonists which decreased neurite outgrowth, branching and neuronal differentiation as well as to the Rar antagonist which increased neurite outgrowth and branching. With this approach, we have identified that the C17.2 cells are responsive to Gr, Rar, Rxr, and Pparβ/δ, hence contributing to the development of reliable and transferable test methods for hazard assessment of EDCs.

  • 16.
    Cediel-Ulloa, Andrea
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Guissard, Marie
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology.
    Hörling, Saga
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology.
    Forsby, Anna
    Rüegg, Joëlle
    Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.
    The pesticides endosulfan and cypermethrin affect neuronal differentiation via retinoic and peroxisome proliferator receptor activityManuscript (preprint) (Other academic)
    Abstract [en]

    Brain development is highly dependent on hormonal homeostasis, hence developmental exposure to endocrine disrupting chemicals (EDCs) is of high concern. In fact, epidemiological and in vivo studies support associations between exposure to EDCs and impaired neurodevelopment. However, the existing hazard assessment of EDCs does not consider developmental neurotoxicity (DNT) prompting an urgent requirement for innovative testing and screening tools addressing endocrine disruption (ED)-induced DNT. We have previously shown the applicability of the immortalized murine neural progenitor cells, C17.2 cells, for addressing ED-DNT. We evidenced decreased neurite outgrowth and branching when the cells were exposed to the Rar, Rxr or Pparβ/δ agonists, and concluded that this is a suitable model for the evaluation of ED-induced DNT for chemicals disrupting Rar, Rxr or Pparβ/δ signalling. In this study we further validated the C17.2 method by testing the effects of 25 EDCs on the same neuronal morphology endpoints as reported in the previous paper. Out of the tested chemicals, endosulfan and cypermethrin decreased, while benzyl butyl phthalate (BBzP) increased neurite outgrowth and branching. We proceeded to evaluate whether these effects were mediated by Rar, Rxr or Ppar β/δ agonism. The neuronal morphology effects of endosulfan and cypermethrin were rescued by co-exposures Rar and Rxr antagonists, and partially rescued by the Ppar β/δ antagonist indicating a common mechanism. With this approach, we have identified that the C17.2 cells can be used as an in vitro model to address ED-induced DNT.

  • 17.
    Cui, Yuan
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Single-cell oxygen metabolism: a universal, effect-based marker of chemical toxicity2024Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Understanding how organisms respond to oxygen (O2) fluctuations in their aquatic microenvironments and studying O2 consumption as an indicator of metabolism is crucial for advancing ecology, toxicology, tissue engineering and environmental sciences. However, despite their importance across scientific disciplines, traditional O2 measurements often lack the sensitivity to capture rapid or localized changes occurring at the microscale. This PhD thesis addresses this challenge by developing novel microfluidic techniques and systems to sense O2.

    To investigate advective and diffusive O2 fluxes at the microscale, this thesis developed chemical sensing particle image velocimetry (sensPIV), a technique that combines optode microparticles and rapid microscope imaging. Specifically, I contributed by testing the performance of sensPIV particles within O2-permeable polydimethylsiloxane (PDMS) devices. This demonstrated the effectiveness of sensPIV in visualizing microscale O2 fluxes, with potential applications around complex biological structures such as coral segments.

    To characterize single-cell O2 respiration rates this thesis developed a micro-respiration chamber device. This device consists of gastight microwells that isolate single-cells, allowing for measuring their O2 consumption via immobilized O2-sensitive optodes. When applied to human hepatic cells, this device revealed size-related respiration kinetics in single-cells and adaptively changing respiration rates due to O2 limitations. The micro-respiration device was then refined into SlipO2Chip, a microfluidic platform that quantifies single-cell O2 respiration rates before and after chemical exposures. This was achieved by adding a mechanism for opening and closing microwells via slipping a dedicated channel that introduces chemical solutions. SlipO2Chip demonstrated a dose-dependent decrease in diatom respiration when exposed to the bacterial infochemical 2-Heptyl-4-Quinolone (HHQ), thus enhancing our understanding of toxicological impacts by detailing cell-to-cell heterogeneity. In a final effort, the micro-respiration chamber device was combined with quantitative phase imaging (QPI) to jointly measure respiration rates and dry mass in individual cells from three unicellular diatom species of varying sizes (16 - 300 µm). Preliminary data were integrated into metabolic scaling theory that describes how metabolic rates scale with geometrical size/mass across all species. The results indicated an interspecific scaling exponent similar to published bulk measures, and three intraspecific exponents showing potential morphological and physiological relationships to metabolism. This proof-of-concept study highlighted that combined measurement of metabolism and mass can enhance the resolution of scaling theory by adding crucial information on cell-to-cell variability.

    Overall, this PhD thesis contributed to ecotoxicology, ecology and bioengineering by providing detailed insights into spatiotemporal O2 dynamics and single-cell O2 metabolism in the presence and absence of chemical perturbations.

    List of papers
    1. Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems
    Open this publication in new window or tab >>Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems
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    2022 (English)In: CELL REPORTS METHODS, ISSN 2667-2375, Vol. 2, no 5, article id 100216Article in journal (Refereed) Published
    Abstract [en]

    From individual cells to whole organisms, O-2 transport unfolds across micrometer- tomillimeter-length scales and can change within milliseconds in response to fluid flows and organismal behavior. The spatiotemporal complexity of these processes makes the accurate assessment of O-2 dynamics via currently availablemethods difficult or unreliable. Here, we present "sensPIV,'' a method to simultaneously measure O-2 concentrations and flow fields. By tracking O-2-sensitive microparticles in flow using imaging technologies that allow for instantaneous referencing, wemeasuredO(2) transportwithin (1) microfluidic devices, (2) sinkingmodel aggregates, and (3) complex colony-forming corals. Through the use of sensPIV, we find that corals use ciliarymovement to link zones of photosynthetic O-2 production to zones of O-2 consumption. SensPIV can potentially be extendable to study flow-organism interactions across many life-science and engineering applications.

    Place, publisher, year, edition, pages
    Elsevier, 2022
    National Category
    Oceanography, Hydrology and Water Resources
    Identifiers
    urn:nbn:se:uu:diva-496262 (URN)10.1016/j.crmeth.2022.100216 (DOI)000907658200006 ()35637907 (PubMedID)
    Funder
    Swedish Research Council, 2019-04401Science for Life Laboratory, SciLifeLab
    Available from: 2023-02-10 Created: 2023-02-10 Last updated: 2024-07-29Bibliographically approved
    2. Size-related variability of oxygen consumption rates in individual human hepatic cells
    Open this publication in new window or tab >>Size-related variability of oxygen consumption rates in individual human hepatic cells
    Show others...
    2024 (English)In: Lab on a Chip, ISSN 1473-0197, E-ISSN 1473-0189, Vol. 24, no 17, p. 4128-4137Article in journal (Refereed) Published
    Abstract [en]

    Accurate descriptions of the variability in single-cell oxygen consumption and its size-dependency are key to establishingmore robust tissue models. By combining microfabricated devices with multiparameter identification algorithms, wedemonstrate that single human hepatocytes exhibit an oxygen level-dependent consumption rate and that their maximaloxygen consumption rate is significantly lower than that of typical hepatic cell cultures. Moreover, we found that clusters oftwo or more cells competing for a limited oxygen supply reduced their maximal consumption rate, highlighting their abilityto adapt to local resource availability and the presence of nearby cells. We used our approach to characterize the covarianceof size and oxygen consumption rate within a cell population, showing that size matters, since oxygen metabolism covarieslognormally with cell size. Our study paves the way for linking the metabolic activity of single human hepatocytes to theirtissue- or organ-level metabolism and describing its size-related variability through scaling laws.

    Place, publisher, year, edition, pages
    Royal Society of Chemistry, 2024
    Keywords
    Cellular O2 metabolism, Respiration kinetics, Single-cell, Optodes, Hepatic cell, Michaelis-Menten, Microfluidics
    National Category
    Cell Biology Biomedical Laboratory Science/Technology
    Research subject
    Engineering Science with specialization in Microsystems Technology
    Identifiers
    urn:nbn:se:uu:diva-535430 (URN)10.1039/D4LC00204K (DOI)001278677100001 ()39069914 (PubMedID)2-s2.0-85199864489 (Scopus ID)
    Funder
    Swedish Research Council, 2019-00207Swedish Research Council, 2019-04401Science for Life Laboratory, SciLifeLabCarl Tryggers foundation , CTS 20:214Novo Nordisk Foundation, NNF22OC0079370
    Available from: 2024-07-30 Created: 2024-07-30 Last updated: 2025-01-15Bibliographically approved
    3. SlipO2Chip- single-cell respiration under tuneable environments
    Open this publication in new window or tab >>SlipO2Chip- single-cell respiration under tuneable environments
    Show others...
    (English)Manuscript (preprint) (Other academic)
    Keywords
    SlipChip, O2 respiration, Single-cell, Diatom, Optodes, HHQ, Toxicology
    National Category
    Engineering and Technology Natural Sciences
    Identifiers
    urn:nbn:se:uu:diva-535431 (URN)
    Available from: 2024-07-30 Created: 2024-07-30 Last updated: 2024-08-07
    4. Combined measurement of oxygen respiration and dry mass in single diatom cells
    Open this publication in new window or tab >>Combined measurement of oxygen respiration and dry mass in single diatom cells
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Oxygen (O₂) is a universal proxy for biological metabolism and is widely used to track cellular energy expenditure under steady-state conditions or external disturbances. Thus O₂ metabolism has been an important factor in studying unifying ecosystem theories, such as the metabolic scaling theory, indicating that metabolic rates scale to a certain power of an organism's mass, spanning over 21 orders of magnitude. In many biological systems, this interspecific exponent is close to 3/4, a relationship known as Kleiber's law. Understanding the metabolic scaling of microorganisms is crucial for predicting their ecological roles and responses to environmental changes. However, measuring the O₂ metabolism of individual microorganisms has been challenging due to technical limitations, restricting high-throughput investigations of cell-to-cell heterogeneity. This study investigates the metabolic scaling of three diatom species - Thalassiosira rotula (T. rotula), Ditylum brightwellii (D. brightwellii), and Coscinodiscus species (Coscinodiscus sp.) - by employing a micro-respiration chamber and advanced imaging techniques. The micro-respiration chamber is made of glass and consist of gas-tight microwells with immobilized O₂-sensitive optodes to isolate single cells and measure their respiration. The optical properties of the chamber enable for combining O₂ respiration measurements with quantitative phase imaging (QPI), a non-invasive microscopy technique that measures cellular dry mass through optical path differences (OPD). We quantified respiration rates and dry mass for individual cells, uncovering interspecific and distinct intraspecific metabolic scaling patterns. Among the three measured species, T. rotula and Coscinodiscus sp. exhibited smaller intraspecific scaling exponents than D. brightwellii, highlighting the influence of morphological and physiological traits on metabolic efficiency. The interspecific scaling pattern aligned with the general metabolic scaling theory, supporting the 3/4 scaling exponent expected by theory. These proof of concept results demonstrate the feasibility of integrating respiration and dry mass measurements into scaling framework for single-cells, and highlights the importance of conducting further species-specific analyses to account for unique morphological and physiological traits that can influence metabolic rates. Our study thus provides a foundation for future research into the effect of environmental impacts on the metabolic scaling of marine diatoms, essential phytoplankton species within marine biogeochemical cycles.

    Keywords
    Metabolic scaling, Kleiber’s law, Single-cell, Diatom, O2 respiration, O2 sensing, Optodes, Dry mass, Quantitative phase imaging
    National Category
    Engineering and Technology Natural Sciences
    Identifiers
    urn:nbn:se:uu:diva-535432 (URN)
    Available from: 2024-07-30 Created: 2024-07-30 Last updated: 2024-07-30
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    UUThesis_Y-Cui-2024
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  • 18. Cui, Yuan
    et al.
    Koren, Klaus
    Aarhus University.
    Tenje, Maria
    Behrendt, Lars
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Combined measurement of oxygen respiration and dry mass in single diatom cellsManuscript (preprint) (Other academic)
    Abstract [en]

    Oxygen (O₂) is a universal proxy for biological metabolism and is widely used to track cellular energy expenditure under steady-state conditions or external disturbances. Thus O₂ metabolism has been an important factor in studying unifying ecosystem theories, such as the metabolic scaling theory, indicating that metabolic rates scale to a certain power of an organism's mass, spanning over 21 orders of magnitude. In many biological systems, this interspecific exponent is close to 3/4, a relationship known as Kleiber's law. Understanding the metabolic scaling of microorganisms is crucial for predicting their ecological roles and responses to environmental changes. However, measuring the O₂ metabolism of individual microorganisms has been challenging due to technical limitations, restricting high-throughput investigations of cell-to-cell heterogeneity. This study investigates the metabolic scaling of three diatom species - Thalassiosira rotula (T. rotula), Ditylum brightwellii (D. brightwellii), and Coscinodiscus species (Coscinodiscus sp.) - by employing a micro-respiration chamber and advanced imaging techniques. The micro-respiration chamber is made of glass and consist of gas-tight microwells with immobilized O₂-sensitive optodes to isolate single cells and measure their respiration. The optical properties of the chamber enable for combining O₂ respiration measurements with quantitative phase imaging (QPI), a non-invasive microscopy technique that measures cellular dry mass through optical path differences (OPD). We quantified respiration rates and dry mass for individual cells, uncovering interspecific and distinct intraspecific metabolic scaling patterns. Among the three measured species, T. rotula and Coscinodiscus sp. exhibited smaller intraspecific scaling exponents than D. brightwellii, highlighting the influence of morphological and physiological traits on metabolic efficiency. The interspecific scaling pattern aligned with the general metabolic scaling theory, supporting the 3/4 scaling exponent expected by theory. These proof of concept results demonstrate the feasibility of integrating respiration and dry mass measurements into scaling framework for single-cells, and highlights the importance of conducting further species-specific analyses to account for unique morphological and physiological traits that can influence metabolic rates. Our study thus provides a foundation for future research into the effect of environmental impacts on the metabolic scaling of marine diatoms, essential phytoplankton species within marine biogeochemical cycles.

  • 19. Cui, Yuan
    et al.
    Moreira, Milena De Albuquerque
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering. Myfab.
    Whalen, Kristen E.
    Barbe, Laurent
    Shi, Qian
    Koren, Klaus
    Aarhus University.
    Tenje, Maria
    Behrendt, Lars
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    SlipO2Chip- single-cell respiration under tuneable environmentsManuscript (preprint) (Other academic)
  • 20.
    Cui, Yuan
    et al.
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Moreira, Milena
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Whalen, Kristen E.
    Haverford Coll, Biol Dept, Haverford, PA USA..
    Barbe, Laurent
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Shi, Qian
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Koren, Klaus
    Aarhus Univ, Dept Biol, Aarhus, Denmark..
    Tenje, Maria
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Behrendt, Lars
    Uppsala University, Science for Life Laboratory, SciLifeLab. Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    SlipO2Chip - single-cell respiration under tuneable environments2024In: Lab on a Chip, ISSN 1473-0197, E-ISSN 1473-0189, Vol. 24, no 20, p. 4786-4797Article in journal (Refereed)
    Abstract [en]

    In disciplines like toxicology and pharmacology, oxygen (O-2) respiration is a universal metric for evaluating the effects of chemicals across various model systems, including mammalian and microalgal cells. However, for these cells the common practice is to segregate populations into control and exposure groups, which assumes direct equivalence in their responses and does not take into account heterogeneity among individual cells. This lack of resolution impedes our ability to precisely investigate differences among experimental groups with small or limited sample sizes. To overcome this barrier, we introduce SlipO(2)Chip, an innovative glass microfluidic platform for precisely quantifying single-cell O-2 respiration in the coordinated absence and presence of chemical solutes. SlipO(2)Chip comprises a wet-etched fused silica channel plate on the top and a dry-etched borosilicate microwell plate at the bottom. The microwells are coated with Pt(ii) meso-tetra(pentafluorophenyl)porphine (PtTFPP), an O-2 sensing optode material and an O-2-independent reference dye. A custom 3D-printed holder facilitates the controlled horizontal movement ('slipping') of the channel plate over the microwell plate, thereby establishing or disrupting the fluid path over microwells. Collectively, these design elements enable the immobilization of single-cells in microwells, their exposure to controlled fluid flows, the coordinated opening and closing of microwells and repeated measurements of single-cell O-2 respiration. Uniquely, by sequentially executing opening and closing it becomes possible to measure single-cell respiration prior to and after exposure to chemical solutes. In a proof-of-concept application, we utilized SlipO(2)Chip to measure the impact of increasing exposures of the marine bacterial signal 2-heptyl-4-quinolone (HHQ) on the dark respiration of the diatom Ditylum brightwellii at single-cell resolution. Results revealed a concentration-dependent decrease in per-cell O-2 dark respiration, with a maximum reduction of 40.2% observed at HHQ concentrations exceeding 35.5 mu M, and a half-maximal effective concentration (EC50) of 5.8 mu M, consistent with that obtained via conventional bulk respiration methods. The ability of SlipO(2)Chip to sequentially assess the effects of chemical substances on single-cell O-2 metabolism is advantageous for research where sample volumes are limited, such as clinical biopsies, studies involving rare microbial isolates, and toxicological studies aiming to address exposure effects while accounting for cell-to-cell variability.<br />

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  • 21. Curien, Gilles
    et al.
    Flori, Serena
    Villanova, Valeria
    Magneschi, Leonardo
    Giustini, Cécile
    Forti, Giorgio
    Matringe, Michel
    Petroutsos, Dimitris
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Kuntz, Marcel
    Finazzi, Giovanni
    The Water to Water Cycles in Microalgae.2016In: Plant and Cell Physiology, ISSN 0032-0781, E-ISSN 1471-9053, Vol. 57, no 7, p. 1354-1363Article in journal (Refereed)
    Abstract [en]

    In oxygenic photosynthesis, light produces ATP plus NADPH via linear electron transfer, i.e. the in-series activity of the two photosystems: PSI and PSII. This process, however, is thought not to be sufficient to provide enough ATP per NADPH for carbon assimilation in the Calvin-Benson-Bassham cycle. Thus, it is assumed that additional ATP can be generated by alternative electron pathways. These circuits produce an electrochemical proton gradient without NADPH synthesis, and, although they often represent a small proportion of the linear electron flow, they could have a huge importance in optimizing CO2 assimilation. In Viridiplantae, there is a consensus that alternative electron flow comprises cyclic electron flow around PSI and the water to water cycles. The latter processes include photosynthetic O2 reduction via the Mehler reaction at PSI, the plastoquinone terminal oxidase downstream of PSII, photorespiration (the oxygenase activity of Rubisco) and the export of reducing equivalents towards the mitochondrial oxidases, through the malate shuttle. In this review, we summarize current knowledge about the role of the water to water cycles in photosynthesis, with a special focus on their occurrence and physiological roles in microalgae.

  • 22.
    Dauter, Ulrike Maria
    et al.
    Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden..
    Alhamdow, Ayman
    Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden..
    Cediel-Ulloa, Andrea
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden.
    Gliga, Anda Roxana
    Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden..
    Albin, Maria
    Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden.;Lund Univ, Div Occupat & Environm Med, Dept Lab Med, Lund, Sweden..
    Broberg, Karin
    Karolinska Inst, Inst Environm Med, Nobels Vag 13, S-17177 Stockholm, Sweden.;Lund Univ, Div Occupat & Environm Med, Dept Lab Med, Lund, Sweden..
    Cancer-related changes and low-to-moderate exposure to welding fumes: A longitudinal study2022In: Scandinavian Journal of Work, Environment and Health, ISSN 0355-3140, E-ISSN 1795-990X, Vol. 48, no 1, p. 21-30Article in journal (Refereed)
    Abstract [en]

    Objective This study tested for an association between early cancer-related biomarkers and low-to-moderate exposure to fumes from welding mild steel.

    Methods Male, non-smoking participants from southern Sweden were recruited and examined (N=338, 171 welders and 167 controls); of these, 78 welders and 96 controls were examined on two occasions six years apart. Exposure to welding fumes was evaluated by measuring respirable dust, welding years, and cumulative exposure. DNA methylation of CpG sites within the cancer-related genes AHRR, F2RL3, and B3GNTL1 was measured by pyrosequencing and relative mitochondrial DNA copy number and telomere length were measured by qPCR in whole-blood samples. Multivariate models were used for longitudinal analysis.

    Results Median exposure to respirable dust was 0.7 mg/m3 at both timepoints, adjusted for use of personal protective equipment. Compared with controls, welders showed a significant decrease over time in DNA methylation of B3GNTL1 CpG1 and CpG4 [adjusted for age, body mass index, and smoking: β=-0.66, standard error (SE)=0.28; β=-0.48, SE=0.24, respectively]. In addition, exposure to respirable dust and cumulative exposure was associated with a decrease in methylation of F2RL3 CpG2 among all welders (adjusted β=-0.67, SE=0.23 and β=-0.03, SE=0.02, respectively). No significant associations were found for AHRR, mitochondrial DNA copy number, or telomere length.

    Conclusion Low-to-moderate exposure to welding fumes was associated with a small effect on selected early epigenetic biomarkers of cancer. The direction of the methylation pattern (lower methylation of specific CpG sites) indicates early lung cancer-related changes associated with mild steel welding.

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  • 23.
    De Castelbajac, Thalia
    et al.
    French Agcy Food Environm & Occupat Hlth & Safety, Maisons Alfort, France..
    Aiello, Kiara
    German Fed Inst Risk Assessment, Berlin, Germany..
    Arenas, Celia Garcia
    German Fed Inst Risk Assessment, Berlin, Germany..
    Svingen, Terje
    Tech Univ Denmark, Natl Food Inst, Lyngby, Denmark..
    Ramhøj, Louise
    Tech Univ Denmark, Natl Food Inst, Lyngby, Denmark..
    Zalko, Daniel
    Univ Toulouse, Toxalim Res Ctr Food Toxicol, INRAE, Toulouse, France..
    Barouki, Robert
    Univ Paris Cite, Inserm, Unit 1124, Paris, France..
    Vanhaecke, Tamara
    Vrije Univ Brussel VUB, Fac Med & Pharm, Dept Vitro Toxicol & Dermato Cosmetol IVTD, Brussels, Belgium..
    Rogiers, Vera
    Vrije Univ Brussel VUB, Fac Med & Pharm, Dept Vitro Toxicol & Dermato Cosmetol IVTD, Brussels, Belgium..
    Audebert, Marc
    Univ Toulouse, Toxalim Res Ctr Food Toxicol, INRAE, Toulouse, France..
    Oelgeschlaeger, Michael
    German Fed Inst Risk Assessment, Berlin, Germany..
    Braeuning, Albert
    German Fed Inst Risk Assessment, Berlin, Germany..
    Blanc, Etienne
    Univ Paris Cite, Inserm, Unit 1124, Paris, France..
    Tal, Tamara
    Helmholtz Ctr Environm Res, Leipzig, Germany..
    Rüegg, Joëlle
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Fritsche, Ellen
    Leibniz Res Inst Environm Med, Dusseldorf, Germany..
    Marx-Stoelting, Philip
    German Fed Inst Risk Assessment, Berlin, Germany..
    Riviere, Gilles
    French Agcy Food Environm & Occupat Hlth & Safety, Maisons Alfort, France..
    Innovative tools and methods for toxicity testing within PARC work package 5 on hazard assessment2023In: Frontiers in Toxicology, E-ISSN 2673-3080, Vol. 5, article id 1216369Article, review/survey (Refereed)
    Abstract [en]

    New approach methodologies (NAMs) have the potential to become a major component of regulatory risk assessment, however, their actual implementation is challenging. The European Partnership for the Assessment of Risks from Chemicals (PARC) was designed to address many of the challenges that exist for the development and implementation of NAMs in modern chemical risk assessment. PARC's proximity to national and European regulatory agencies is envisioned to ensure that all the research and innovation projects that are initiated within PARC agree with actual regulatory needs. One of the main aims of PARC is to develop innovative methodologies that will directly aid chemical hazard identification, risk assessment, and regulation/policy. This will facilitate the development of NAMs for use in risk assessment, as well as the transition from an endpoint-based animal testing strategy to a more mechanistic-based NAMs testing strategy, as foreseen by the Tox21 and the EU Chemical's Strategy for Sustainability. This work falls under work package 5 (WP5) of the PARC initiative. There are three different tasks within WP5, and this paper is a general overview of the five main projects in the Task 5.2 'Innovative Tools and methods for Toxicity Testing,' with a focus on Human Health. This task will bridge essential regulatory data gaps pertaining to the assessment of toxicological prioritized endpoints such as non-genotoxic carcinogenicity, immunotoxicity, endocrine disruption (mainly thyroid), metabolic disruption, and (developmental and adult) neurotoxicity, thereby leveraging OECD's and PARC's AOP frameworks. This is intended to provide regulatory risk assessors and industry stakeholders with relevant, affordable and reliable assessment tools that will ultimately contribute to the application of next-generation risk assessment (NGRA) in Europe and worldwide.

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  • 24.
    de Haas, Elske N.
    et al.
    Univ Utrecht, Dept Vet Sci Anim Sci & Soc, Utrecht, Netherlands.;Wageningen Univ, Behav Ecol Grp, Wageningen, Netherlands.;Wageningen Univ, Adaptat Physiol Grp, Dept Anim Sci, Wageningen, Netherlands..
    Pertille, Fabio
    Escola Super Agr Luis Dequeiroz, Sao Paulo, Brazil.;Linköping Univ, IFM Biol, Avian Behav Physiol & Genom Grp, Linköping, Sweden..
    Kjaer, Joergen B.
    Fed Res Inst Anim Hlth, Celle, Germany.;Univ Copenhagen, Dept Vet & Anim Sci, Copenhagen, Denmark..
    Jensen, Per
    Linköping Univ, IFM Biol, Avian Behav Physiol & Genom Grp, Linköping, Sweden..
    Guerrero-Bosagna, Carlos
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Genetic and neuro-epigenetic effects of divergent artificial selection for feather pecking behaviour in chickens2024In: BMC Genomics, E-ISSN 1471-2164, Vol. 25, no 1, article id 1219Article in journal (Refereed)
    Abstract [en]

    Feather pecking (FP) is a repetitive behaviour in chickens, influenced by genetic, epigenetic, and environmental factors, similar to behaviours seen in human developmental disorders (e.g., hyperactivity, autism). This study examines genetic and neuro-epigenetic factors in the thalamus of chickens from lines selected for seven generations for high or low FP behaviour (HFP or LFP). We integrate data on Differentially Methylated Regions (DMRs), Single Nucleotide Polymorphisms (SNPs), and Copy Number Variations (CNVs) in this controlled artificial selection process. Significant differences in behaviour, immunology, and neurology have been reported in these lines. We identified 710 SNPs in these lines that indicate new potentially important genes for FP such as TMPRSS6 (implicated in autism), and SST and ARNT2 (somatostatin function). CNV were the omic level most affected during selection. The largest CNVs found were in RIC3 (gain in HFP) and SH3RF2 (gain in LFP) genes, linked to nicotinic acetylcholine receptor regulation and human oncogenesis, respectively. Our study also suggests that promoters and introns are hotspots for CpG depletion. The overlapping of the omic levels investigated here with data from a public FP Quantitative Trait Loci (QTL) database revealed novel candidate genes for understanding repetitive behaviours, such as RTKN2, associated with Alzheimer's disease in humans. This study suggests CNVs as a crucial initial step for genomic diversification, potentially more impactful than SNPs.

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  • 25.
    Di Criscio, Michela
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology.
    Epigenetic Insights into the Impact of Endocrine Disruptors on (Neuro)phenotype - From Developmental to Multigenerational Effects2024Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Anthropogenic chemicals are pervasive in the environment, posing significant challenges due to their potential effects on human and wildlife health. Among these, endocrine disrupting chemicals (EDCs) are particularly concerning, as developmental exposure to EDCs has been linked to adverse outcomes later in life and across generations. Epigenetic mechanisms, which are crucial for embryonic development and play a key role in cell specification and the determination of phenotypic traits, may provide insights into how EDCs exert long-term effects. This thesis explores the connection between real-life developmental exposure to EDCs and epigenetic alterations, with a particular focus on neuro-phenotypical effects. 

    A previous epidemiological study demonstrated an association between prenatal co-exposure to eight EDCs (referred to as Mixture N1) and language delay in children, suggesting an impact of this mixture on neurodevelopment. Further research showed that in utero exposure to Mixture N1 altered gene expression and behavior in adult mice. In this study, the potential role of epigenetic mechanisms underlying these long-term effects was investigated by analyzing DNA methylation. Mixture N1 decreased DNA methylation in males at three genes associated with the hypothalamus-pituitary-adrenal (HPA) axis: glucocorticoid receptor (Nr3c1), mineralocorticoid receptor (Nr3c2), and corticotropin-releasing hormone receptor 1 (Crhr1). The decrease in Nr3c1 methylation was correlated with increased gene expression and with behavioral alterations. However, in vitro experiments did not provide evidence that Mixture N1 induced these epigenetic alterations during development.

    This thesis also explored multi-generational effects of exposure to perfluorooctanesulfonic acid (PFOS) and perfluorobutanesulfonic acid (PFBS), two environmental pollutants with endocrine-disrupting properties. Zebrafish were exposed to chemicals during development at environmentally relevant concentrations. The exposure led to changes in behaviors, transcriptome, and DNA methylation, with significant DNA methylation changes observed in neuro-related genes. These alterations were also detected in their offspring (F1) and extended to the subsequent generation (F2). The investigation then focused on the potential mechanisms behind these transgenerational effects. Changes in RNA levels and RNA methylation, specifically m6A, were analyzed during early development in F2. PFOS was selected for this analysis due to its higher impact on neuro-phenotypical alterations. It was found that transcript levels and m6A patterns were altered in F2. These changes were associated with genes involved in epigenetic processes and translation, suggesting a possible role in the inheritance of neuro-phenotypical traits. 

    Overall, this thesis offers new insights into the connections between real-life exposure to EDCs, their impact on neuro-phenotypes, and the potential underlying epigenetic mechanisms.

    List of papers
    1. A human-relevant mixture of endocrine disrupting chemicals induces changes in hippocampal DNA methylation correlating with hyperactive behavior in male mice
    Open this publication in new window or tab >>A human-relevant mixture of endocrine disrupting chemicals induces changes in hippocampal DNA methylation correlating with hyperactive behavior in male mice
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    2023 (English)In: Chemosphere, ISSN 0045-6535, E-ISSN 1879-1298, Vol. 313, article id 137633Article in journal (Refereed) Published
    Abstract [en]

    Humans are ubiquitously exposed to endocrine disrupting chemicals (EDCs), substances that interfere with endogenous hormonal signaling. Exposure during early development is of particular concern due to the pro-gramming role of hormones during this period. A previous epidemiological study has shown association between prenatal co-exposure to 8 EDCs (Mixture N1) and language delay in children, suggesting an effect of this mixture on neurodevelopment. Furthermore, in utero exposure to Mixture N1 altered gene expression and behavior in adult mice. In this study, we investigated whether epigenetic mechanisms could underlie the long term effects of Mixture N1 on gene expression and behavior. To this end, we analyzed DNA methylation at regulatory regions of genes whose expression was affected by Mixture N1 in the hippocampus of in utero exposed mice using bisulfite-pyrosequencing. We show that Mixture N1 decreases DNA methylation in males at three genes that are part of the hypothalamus-pituitary-adrenal (HPA) axis: Nr3c1, Nr3c2, and Crhr1, coding for the glucocorticoid receptor, the mineralocorticoid receptor, and the corticotropin releasing hormone receptor 1, respectively. Furthermore, we show that the decrease in Nr3c1 methylation correlates with increased gene expression, and that Nr3c1, Nr3c2, and Crhr1 methylation correlates with hyperactivity and reduction in social behavior. These findings indicate that an EDC mixture corresponding to a human exposure scenario induces epigenetic changes, and thus pro-gramming effects, on the HPA axis that are reflected in the behavioral phenotypes of the adult male offspring.

    Place, publisher, year, edition, pages
    Elsevier, 2023
    Keywords
    Endocrine disrupting chemicals, Human relevant mixture, DNA methylation, Hippocampus, HPA axis, Hyperactive behavior
    National Category
    Pharmacology and Toxicology
    Identifiers
    urn:nbn:se:uu:diva-497072 (URN)10.1016/j.chemosphere.2022.137633 (DOI)000913946900001 ()36565761 (PubMedID)