| Menz, Gesina ; Engblom, Stefan | Modelling Population-Level Hes1 Dynamics: Insights from a Multi-framework Approach | 2025 |
| Blom, Erik ; Engblom, Stefan | Morphological Stability for in silico Models of Avascular Tumors | 2024 |
| Bronstein, Samuel ; Engblom, Stefan ; Marin, Robin | Bayesian inference in epidemics: linear noise analysis | 2023 |
| Marin, Robin (et al.) | Bayesian Monitoring of COVID-19 in Sweden | 2023 |
| Fall, Tove (et al.) | CRUSH Covid - ett tvärvetenskapligt samarbetsprojekt | 2023 |
| Wrede, Fredrik (et al.) | Robust and integrative Bayesian neural networks for likelihood-free parameter inference | 2022 |
| Kennedy, Beatrice (et al.) | App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden | 2022 |
| Bull, Jonathan R. ; Engblom, Stefan | Distributed and Adaptive Fast Multipole Method in Three Dimensions | 2021 |
| Engblom, Stefan ; Eriksson, Robin ; Vilanova, Pedro | Towards Confident Bayesian Parameter Estimation in Stochastic Chemical Kinetics | 2021 |
| Runvik, Håkan (et al.) | Initialization of a Disease Transmission Model | 2020 |
| Engblom, Stefan ; Eriksson, Robin ; Widgren, Stefan | Bayesian epidemiological modeling over high-resolution network data | 2020 |
| Liu, Jing ; Engblom, Stefan ; Nettelblad, Carl | Flash X-ray diffraction imaging in 3D: a proposed analysis pipeline | 2020 |
| Arjmand, Doghonay ; Engblom, Stefan ; Kreiss, Gunilla | Temporal upscaling in micromagnetism via heterogeneous multiscale methods | 2019 |
| Widgren, Stefan (et al.) | SimInf for spatio-temporal data-driven modeling of African swine fever in Swedish wildboar | 2019 |
| Engblom, Stefan | Stochastic simulation of pattern formation in growing tissue: A multilevel approach | 2019 |
| Lindén, Jonatan (et al.) | Exposing inter-process information for efficient PDES of spatial stochastic systems on multicores | 2019 |
| Widgren, Stefan (et al.) | SimInf: An R package for data-driven stochastic disease spread simulations | 2019 |
| Liu, Jing ; van der Schot, Gijs ; Engblom, Stefan | Supervised classification methods for flash X-ray single particle diffraction imaging | 2019 |
| Chevallier, Augustin ; Engblom, Stefan | Pathwise error bounds in multiscale variable splitting methods for spatial stochastic kinetics | 2018 |
| Widgren, Stefan (et al.) | Spatio-temporal modelling of verotoxigenic Escherichia coli O157 in cattle in Sweden: exploring options for control | 2018 |
| Engblom, Stefan ; Lötstedt, Per ; Meinecke, Lina | Mesoscopic modeling of random walk and reactions in crowded media | 2018 |
| Bauer, Pavol (et al.) | Multiscale modelling via split-step methods in neural firing | 2018 |
| Lindén, Jonatan (et al.) | Fine-grained local dynamic load balancing in PDES | 2018 |
| Engblom, Stefan ; Wilson, Daniel B. ; Baker, Ruth E. | Scalable population-level modelling of biological cells incorporating mechanics and kinetics in continuous time | 2018 |
| Goude, Anders ; Engblom, Stefan | A general high order two-dimensional panel method | 2018 |
| Liu, Jing ; Engblom, Stefan ; Nettelblad, Carl | Assessing uncertainties in x-ray single-particle three-dimensional reconstruction | 2018 |
| Eriksson, Robin ; Engblom, Stefan ; Widgren, Stefan | Towards Bayesian parametrization of national scale epidemics | 2018 |
| Senek, Aleksandar ; Engblom, Stefan | Multiscale stochastic neuron modeling – with applications in deep brain stimulation | 2017 |
| Lindén, Jonatan (et al.) | Exposing inter-process information for efficient parallel discrete event simulation of spatial stochastic systems | 2017 |
| Bauer, Pavol ; Engblom, Stefan | The URDME manual Version 1.3 | 2017 |
| Christoffersson, Gustaf (et al.) | Vascular sprouts induce local attraction of proangiogenic neutrophils | 2017 |
| Engblom, Stefan ; Hellander, Andreas ; Lötstedt, Per | Multiscale simulation of stochastic reaction–diffusion networks | 2017 |
| Engblom, Stefan | Stability and strong convergence for spatial stochastic kinetics | 2017 |
| Engblom, Stefan ; Widgren, Stefan | Data-driven computational disease spread modeling: from measurement to parametrization and control | 2017 |
| Widgren, Stefan (et al.) | Data-driven network modelling of disease transmission using complete population movement data: spread of VTEC O157 in Swedish cattle | 2016 |
| Engblom, Stefan ; Lukarski, Dimitar | Fast Matlab compatible sparse assembly on multicore computers | 2016 |
| Bull, Jonathan ; Engblom, Stefan ; Holmgren, Sverker | A direct solver for the advection–diffusion equation using Green's functions and low-rank approximation | 2016 |
| Bauer, Pavol ; Engblom, Stefan ; Widgren, Stefan | Fast event-based epidemiological simulations on national scales | 2016 |
| Blanc, Emilie (et al.) | Mesoscopic modeling of stochastic reaction–diffusion kinetics in the subdiffusive regime | 2016 |
| Meinecke, Lina (et al.) | Analysis and design of jump coefficients in discrete stochastic diffusion models | 2016 |
| Engblom, Stefan ; Sunkara, Vikram | Preconditioned Metropolis sampling as a strategy to improve efficiency in posterior exploration | 2016 |
| Engblom, Stefan | Strong convergence for split-step methods in stochastic jump kinetics | 2015 |
| Bauer, Pavol ; Engblom, Stefan | Sensitivity estimation and inverse problems in spatial stochastic models of chemical kinetics | 2015 |
| Bauer, Pavol (et al.) | Efficient inter-process synchronization for parallel discrete event simulation on multicores | 2015 |
| Erlinge, David (et al.) | Therapeutic Hypothermia for the Treatment of Acute Myocardial Infarction-Combined Analysis of the RAPID MI-ICE and the CHILL-MI Trials | 2015 |
| Milias-Argeitis, Andreas (et al.) | Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks | 2015 |
| Ekeberg, Tomas ; Engblom, Stefan ; Liu, Jing | Machine learning for ultrafast X-ray diffraction patterns on large-scale GPU clusters | 2015 |
| Engblom, Stefan | On the stability of stochastic jump kinetics | 2014 |
| Engblom, Stefan ; Liu, Jing | X-ray laser imaging of biomolecules using multiple GPUs | 2014 |
| Holm, Marcus (et al.) | Dynamic autotuning of adaptive fast multipole methods on hybrid multicore CPU and GPU systems | 2014 |
| Engblom, Stefan ; Pender, Jamol | Approximations for the moments of nonstationary and state dependent birth–death queues | 2014 |
| Erlinge, David (et al.) | Rapid Endovascular Catheter Core Cooling Combined With Cold Saline as an Adjunct to Percutaneous Coronary Intervention for the Treatment of Acute Myocardial Infarction The CHILL-MI Trial: A Randomized Controlled Study of the Use of Central Venous Catheter Core Cooling Combined With Cold Saline as an Adjunct to Percutaneous Coronary Intervention for the Treatment of Acute Myocardial Infarction | 2014 |
| Engblom, Stefan (et al.) | On diffuse interface modeling and simulation of surfactants in two-phase fluid flow | 2013 |
| Do-Quang, Minh (et al.) | The well-posedness of diffuse interface modeling of surfactants in two-phase fluid flow | 2013 |
| Goude, Anders ; Engblom, Stefan | Adaptive fast multipole methods on the GPU | 2013 |
| Mattsson, Ken ; Almquist, Martin ; Engblom, Stefan | Stable and accurate wave simulations in complex geometries and discontinuous media | 2013 |
| Bauer, Pavol (et al.) | URDME v. 1.2: User's manual | 2012 |
| Engblom, Stefan | On the stability of stochastic jump kinetics | 2012 |
| Goude, Anders ; Engblom, Stefan | Adaptive fast multipole methods on the GPU | 2012 |
| Drawert, Brian ; Engblom, Stefan ; Hellander, Andreas | URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries | 2012 |
| Engblom, Stefan | On well-separated sets and fast multipole methods | 2011 |
| Drawert, Brian ; Engblom, Stefan ; Hellander, Andreas | URDME v. 1.1: User's manual | 2011 |
| Engblom, Stefan | Spectral approximation of solutions to the chemical master equation | 2009 |
| Engblom, Stefan | Parallel in time simulation of multiscale stochastic chemical kinetics | 2009 |
| Engblom, Stefan | Galerkin spectral method applied to the chemical master equation | 2009 |
| Deglaire, Paul (et al.) | Analytical solutions for a single blade in vertical axis turbine motion in two dimensions | 2009 |
| Engblom, Stefan (et al.) | Simulation of stochastic reaction-diffusion processes on unstructured meshes | 2009 |
| Engblom, Stefan | Numerical Solution Methods in Stochastic Chemical Kinetics | 2008 |
| Engblom, Stefan | Time-parallel simulation of stochastic chemical kinetics | 2008 |
| Cullhed, Josef ; Engblom, Stefan ; Hellander, Andreas | The URDME Manual version 1.0 | 2008 |
| Engblom, Stefan | A discrete spectral method for the chemical master equation | 2008 |
| Engblom, Stefan | Parallel in time simulation of multiscale stochastic chemical kinetics | 2008 |
| Engblom, Stefan (et al.) | Simulation of stochastic reaction-diffusion processes on unstructured meshes | 2008 |
| Engblom, Stefan | Numerical methods for the chemical master equation | 2006 |
| Engblom, Stefan | Computing the moments of high dimensional solutions of the master equation | 2006 |
| Engblom, Stefan | Gaussian quadratures with respect to discrete measures | 2006 |
| Engblom, Stefan | Computing the moments of high dimensional solutions of the master equation | 2005 |