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  • Public defence: 2026-02-17 10:00 Zootissalen, Uppsala
    Schmidt, Neele
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics, Animal ecology.
    Ecosystem restoration through restocking hatchling cod in the Baltic Sea: Overcoming critical challenges2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Top predators play a crucial role in maintaining healthy and resilient ecosystems, as they regulate prey populations, stabilize food webs, and support biodiversity. In the Eastern Baltic Sea, cod (Gadus morhua) once played this role, but the stock has declined to critically low levels and shows no sign of recovery despite a ban on targeted commercial fishing. This thesis investigates whether a hatch and release approach could support future stock recovery and how this can be achieved. First, gillnets and environmental DNA were compared as tools for assessing fish communities and for identifying predators and competitors at potential release sites. Both methods detected key species such as sprat and herring, but revealed different fish communities, highlighting the importance of combining approaches for site selection. Second, reproduction of captive cod was investigated to understand variation in egg and larval characteristics throughout the spawning season. Substantial differences in traits were observed between broodstock groups of different fish sizes and across the season. Third, methods to acclimate eggs and larvae to Baltic Sea salinity conditions were tested, showing that the lowering of incubation salinity around hatching brought neutral buoyancy closer to Baltic conditions without impeding survival. This step is essential for restocking, as larvae must be able to avoid sinking into oxygen-poor deep layers. Finally, different otolith-marking techniques were evaluated to enable reliable distinction of released larvae from wild individuals, ultimately making it possible to evaluate restocking success. Both immersion in strontium enriched water, as well as low-dose alizarine complexone produced clear marks suitable for identifying released larvae, with strontium showing strong potential for large-scale use. Together, these results provide key methodological steps for an optimized cod restocking strategy, while emphasizing that improved environmental conditions remain essential for long-term recovery.

    List of papers
    1. Fish communities in Baltic Sea coastal bays: using eDNA metabarcoding to assess vertical profile and traditional method comparison
    Open this publication in new window or tab >>Fish communities in Baltic Sea coastal bays: using eDNA metabarcoding to assess vertical profile and traditional method comparison
    2025 (English)In: Fisheries & Aquatic Life, E-ISSN 2545-059X, Vol. 33, no 2, p. 72-90Article in journal (Refereed) Published
    Abstract [en]

    Fish communities in the coastal Baltic Sea arecurrently monitored using passive fishing gears, such asgillnets. In recent years, eDNA approaches have gainedpopularity for fish detection thanks to their non-invasivenature, faster processing, and more precise identification,although such methods have been underutilized incomprehensive fish community assessments in the Baltic Sea.This study reports fish diversity using eDNA metabarcodingwithin different depth profiles for the first time intemperature-stratified coastal bays in the Baltic Sea, whilealso offering some comparison with traditional net-basedapproaches. Comparing samples above and below thethermocline revealed exclusivity in fish species at bothdepths, emphasizing the importance of vertical sampling incapturing a comprehensive understanding of fish distributionpatterns in such systems. Results indicated that eDNAcaptured more fish taxa per sample compared to gillnetsampling, with similar or higher fish diversity, althoughvariations occurred between bays. This study highlights theimportance of incorporating eDNA metabarcoding, alongsidetraditional survey methods, to aid assessment of fishcommunities in aquatic environments.

    Place, publisher, year, edition, pages
    Stanisław Sakowicz Inland Fisheries Institute, 2025
    Keywords
    marine, brackish, thermocline, shallow-water, deep-water, Sweden
    National Category
    Ecology Fish and Aquacultural Science
    Identifiers
    urn:nbn:se:uu:diva-572518 (URN)10.2478/aopf-2025-0007 (DOI)
    Available from: 2025-12-03 Created: 2025-12-03 Last updated: 2025-12-04Bibliographically approved
    2. Egg and larval production of Eastern Baltic cod in captivity over one spawning season
    Open this publication in new window or tab >>Egg and larval production of Eastern Baltic cod in captivity over one spawning season
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Fish and Aquacultural Science
    Identifiers
    urn:nbn:se:uu:diva-572520 (URN)
    Available from: 2025-12-03 Created: 2025-12-03 Last updated: 2025-12-04
    3. Acclimatizing laboratory-reared hatchling cod (Gadus morhua) to salinity conditions in the Baltic Sea
    Open this publication in new window or tab >>Acclimatizing laboratory-reared hatchling cod (Gadus morhua) to salinity conditions in the Baltic Sea
    2024 (English)In: Aquaculture, ISSN 0044-8486, E-ISSN 1873-5622, Vol. 579, article id 740255Article in journal (Refereed) Published
    Abstract [en]

    Decades of overfishing and unsustainable management, together with habitat degradation and eutrophication, depleted the cod (Gadus morhua) stocks in the Baltic Sea. Accompanying severe oxygen deficiency and decreased salinity in their spawning grounds restricted successful spawning today to the Bornholm basin, resulting in decreased recruitment. In order for the species to recover, several different measures are required and proposed, among others restocking. We therefore investigated the possibility of producing laboratory-reared cod larvae acclimatized to the current environment in the Baltic Sea. For this, cod were reared from newly fertilized eggs to non-feeding yolk-sac larvae, testing the effect of different salinity reduction treatments during early development on mortality, hatching success, and neutral buoyancy. The results show that a sudden ambient salinity decrease after hatching has no strong effect on survival or hatching (around 60% and 95%, respectively), while it decreased neutral buoyancy of larvae from 18 to minimum 12.5 psu. Lowest buoyancy was reached in treatments with a salinity change in the early egg stage. Gradual salinity decrease starting early in the egg stage yielded to significantly increased mortality and reduced hatching success, but also lowest buoyancy of 12 psu. We showed that a decrease of ambient salinity enables the production of yolk-sac cod larvae with reduced buoyancy, which are potentially better acclimatized to survive in current environmental conditions in the Baltic Sea.

    Place, publisher, year, edition, pages
    Elsevier, 2024
    Keywords
    Baltic Sea, Cod, Yolk-sac larvae, Buoyancy, Salinity
    National Category
    Ecology Fish and Aquacultural Science
    Identifiers
    urn:nbn:se:uu:diva-517488 (URN)10.1016/j.aquaculture.2023.740255 (DOI)001102637400001 ()
    Note

    Correction in: Aquaculture, vol. 581, article no. 740489

    DOI: 10.1016/j.aquaculture.2023.740489

    Available from: 2023-12-11 Created: 2023-12-11 Last updated: 2025-12-04Bibliographically approved
    4. Marking the otoliths of hatchling cod: a method comparison
    Open this publication in new window or tab >>Marking the otoliths of hatchling cod: a method comparison
    (English)Manuscript (preprint) (Other academic)
    National Category
    Fish and Aquacultural Science
    Identifiers
    urn:nbn:se:uu:diva-572521 (URN)
    Available from: 2025-12-03 Created: 2025-12-03 Last updated: 2025-12-04
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  • Public defence: 2026-02-20 09:15 BMC A1:111a, Uppsala
    Barnå, Fredrik
    Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry for Life Sciences, Organic Chemistry.
    Expanding the aryne toolbox: Studies of aryne regioselectivity and precursor post-functionalisation2025Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    This thesis explores aryne chemistry in two directions, the post-functionalisation of Kobayashi's precursor to prepare novel aryne precursors, and the study of the regioselectivity of aryne capture reactions. The goal was to extend the understanding of aryne regioselectivity, and to open up new avenues for future applications of aryne chemistry.

    The crystal structures of several distally borylated Kobayashi's precursors are presented (Paper I). After that, the thesis covers the interaction between the arynes resulting from distally borylated Kobayashi precursors and their boron, demonstrating the unprecedented regioselectivity of capture reactions with these arynes (Paper II). Distally borylated Kobayashi's precursor was converted to an iodonium salt to prepare the first chemoselective formal benzdiyne precursor (Paper III). An iodonium-based aryne precursor was installed in 2,1,3-benzothiadiazole to prepare the novel heteroaryne 4,5-benzothiadiazolyne (Paper IV). Lastly, methods for the optimisation of aryne and cycloalkyne geometries were benchmarked (Paper V). It was found that PBEh-3c offered an excellent performance-to-cost ratio. The largest ever library of aryne and cycloalkyne geometries was prepared. The library was then analysed in the first extensive study of structure-distortion relationships of substituted arynes and cycloalkynes (Paper VI).

    List of papers
    1. Synthesis and crystal structures of boryl ortho-silylaryl trifluoromethanesulfonates
    Open this publication in new window or tab >>Synthesis and crystal structures of boryl ortho-silylaryl trifluoromethanesulfonates
    2024 (English)In: Acta Crystallographica Section E: Crystallographic Communications, E-ISSN 2056-9890, Vol. 80, no 2, p. 143-147Article in journal (Refereed) Published
    Abstract [en]

    We report the synthesis and structural characterization of three crystalline borylated ortho-silylaryl tri­fluoro­methane­sulfonates: 5-(4,4,5,5-tetra­methyl-1,3,2-dioxaborolan-2-yl)-2-(tri­methyl­sil­yl)phenyl tri­fluoro­methane­sulfonate, C16H24BF3O5SSi (1a), 4-(4,4,5,5-tetra­methyl-1,3,2-dioxaborolan-2-yl)-2-(tri­methyl­sil­yl)phenyl tri­fluoro­methane­sulfonate, C16H24BF3O5SSi (1b), and 2-methyl-4-(4,4,5,5-tetra­methyl-1,3,2-dioxaborolan-2-yl)-6-(tri­methyl­silyl)phen­yl tri­fluoro­methane­sulfonate, C17H26BF3O5SSi (2), which are versatile aryne precursors. For all three compounds, the heteroatom substituents are almost coplanar with the central aromatic moiety. C—heteroatom bonding metrics are unexceptional and fall withing the typical range of C—B, C—Si, and C—O single bonds. Despite numerous electronegative sites, only weak inter­molecular inter­actions are observed in the solid state.

    Place, publisher, year, edition, pages
    International Union Of Crystallography, 2024
    Keywords
    solid-state structure, aryne precursor, pinacole borane, crystal structure
    National Category
    Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-526557 (URN)10.1107/S2056989024000264 (DOI)001184382600011 ()38333140 (PubMedID)
    Funder
    Swedish Research Council, 2019-05424Swedish Research Council, 2021-03658
    Available from: 2024-04-15 Created: 2024-04-15 Last updated: 2025-12-09Bibliographically approved
    2. Aryne Capture Regiocontrol via Fluoroboronate-induced Distortion
    Open this publication in new window or tab >>Aryne Capture Regiocontrol via Fluoroboronate-induced Distortion
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    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    We report the first method for steering nucleophilic attack on arynes towards the proximal triple bond carbon with respect to a non-adjacent regiocontrolling substituent – a previously unavailable mode of regiocontrol. Fluoroboronates in species of the type M+[(aryne–B(F)(pin)]– may be generated readily and tuned to act as strong regioselectivity directors in aryne trapping reactions. DFT studies indicate significant triple bond distortion in the corresponding arynes, leading to exceptional regioselectivities (up to 22:1 rr in the absence of other directing functional groups). After aryne trapping, the fluoroboronates may optionally be derivatized in situ, rendering them net ‘traceless’ directors of regioselectivity.

    National Category
    Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-573027 (URN)
    Available from: 2025-12-09 Created: 2025-12-09 Last updated: 2025-12-09
    3. Chemo- and Regioselective Generation of the 1,3-Benzdiyne Synthon
    Open this publication in new window or tab >>Chemo- and Regioselective Generation of the 1,3-Benzdiyne Synthon
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    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    A versatile 1,3-benzdiyne precursor is reported that enables chemoselective and sequential aryne generation under mild conditions. Base-mediated activation of an iodonium moiety yields a highly distorted aryne, which undergoes regioselective trapping to form 1,2,3,4-tetrasubstituted arenes. These adducts retain a silyl-triflate motif, allowing subsequent fluoride-triggered aryne generation. This strategy grants modular access to complex polycyclic aromatic hydrocarbons and heterocycles.

    National Category
    Organic Chemistry
    Research subject
    Chemistry with specialization in Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-571982 (URN)
    Funder
    Swedish Research Council, 2019-05424
    Available from: 2025-11-24 Created: 2025-11-24 Last updated: 2025-12-09
    4. Derivatization of 2,1,3-Benzothiadiazole via Regioselective C–H Functionalization and Aryne Reactivity
    Open this publication in new window or tab >>Derivatization of 2,1,3-Benzothiadiazole via Regioselective C–H Functionalization and Aryne Reactivity
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    2024 (English)In: Journal of Organic Chemistry, ISSN 0022-3263, E-ISSN 1520-6904, Vol. 89, no 9, p. 6138-6148Article in journal (Refereed) Published
    Abstract [en]

    Despite growing interest in 2,1,3-benzothiadiazole (BTD) as an integral component of many functional molecules, methods for the functionalization of its benzenoid ring have remained limited, and many even simply decorated BTDs have required de novo synthesis. We show that regioselective Ir-catalyzed C–H borylation allows access to versatile 5-boryl or 4,6-diboryl BTD building blocks, which undergo functionalization at the C4, C5, C6, and C7 positions. The optimization and regioselectivity of C–H borylation are discussed. A broad reaction scope is presented, encompassing ipso substitution at the C–B bond, the first examples of ortho-directed C–H functionalization of BTD, ring closing reactions to generate fused ring systems, as well as the generation and capture reactions of novel BTD-based heteroarynes. The regioselectivity of the latter is discussed with reference to the Aryne Distortion Model.

    Place, publisher, year, edition, pages
    American Chemical Society (ACS), 2024
    National Category
    Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-529605 (URN)10.1021/acs.joc.4c00122 (DOI)001240992200001 ()38648018 (PubMedID)
    Funder
    Swedish Research Council, 2018-03524Swedish Research Council, 2019-05424Carl Tryggers foundation , 21:1210National Academic Infrastructure for Supercomputing in Sweden (NAISS)Swedish National Infrastructure for Computing (SNIC)UPPMAXSwedish Research Council, 2022-06725Swedish Research Council, 2018-05973
    Available from: 2024-05-29 Created: 2024-05-29 Last updated: 2025-12-09Bibliographically approved
    5. Benchmarking computational methods for the optimisation of aryne and cycloalkyne geometries
    Open this publication in new window or tab >>Benchmarking computational methods for the optimisation of aryne and cycloalkyne geometries
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    The geometric distortion of the triple bond in arynes and cycloalkynes can be used to predict the regioselectivity of capture reactions. Published distortion values are commonly not comparable, as different computational methods have been used. Different computation methods were benchmarked. It was found that PBEh-3c was accurately able to compute aryne and cycloalkyne    geometries at lower cost than B3LYP/6-31G(d). Solvent models were shown to significantly affect computed computed geometries. A general framework for how to report aryne distortions was proposed. Lastly, the properties of cyclopentyne and benzyne was studied using CCSD(T).

    National Category
    Theoretical Chemistry Organic Chemistry
    Research subject
    Chemistry with specialization in Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-572863 (URN)
    Available from: 2025-12-08 Created: 2025-12-08 Last updated: 2025-12-09
    6. Elucidating structure-distortion relationships in arynes and cycloalkynes
    Open this publication in new window or tab >>Elucidating structure-distortion relationships in arynes and cycloalkynes
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    A new database of 2159 aryne and cycloalkyne geometries is reported. Trends in the data was studied to elucidate structure-distortion relationships. It was found that there are periodic    trends, that resonance effects plays an important role in distorting the triple bond, that the distortion can be tuned by changing the electronics of a substituent, and that conformation plays an important role in the distortion of cyclohexynes.

    National Category
    Theoretical Chemistry Organic Chemistry
    Research subject
    Chemistry with specialization in Organic Chemistry
    Identifiers
    urn:nbn:se:uu:diva-572864 (URN)
    Available from: 2025-12-08 Created: 2025-12-08 Last updated: 2025-12-09
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    UUThesis_Barnå,F-2026
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  • Public defence: 2026-02-27 09:15 Häggsalen, Uppsala
    Xu, Jing
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering, Microsystems Technology.
    Pneumatic Circuits for Soft Robotics and Wearables2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    This thesis advances the field of soft robotics by developing a unified framework for pneumatic circuits that enable multiplexing, logic processing, sensing, and control. Motivated by the growing demand for compliant, lightweight, and intelligent systems in wearable and human–robot interaction contexts, the work addresses longstanding challenges in scaling soft robotic architectures by integrating multifunctional pneumatic valves. By leveraging the pneumatic mechanisms—ranging from miniaturized actuator matrices and high-gain valves to sensor–valve reflex loops and reconfigurable modular assemblies—the research demonstrates how pneumatic hardware can serve as actuating, sensing, and computing units.

    The thesis introduces several key contributions. First, a multiplexed pneumatic actuator matrix enables   actuators to be controlled using only   signals, offering a scalable and space-efficient solution for high-density soft robotic interfaces. Second, programmable and reconfigurable pneumatic valves—including hot-pluggable pinch valves, normally open and normally closed architectures, and multifunctional logic-enabled devices—facilitate Boolean operations such as AND, OR, NAND, and NOR without physical rewiring. These valves achieve high pressure gain, rapid switching, and seamless integration into existing pneumatic lines. Third, the dissertation establishes electronics-free sensorimotor pathways by coupling pressure-sensitive pouches with pneumatic logic, enabling autonomous grasping, haptic feedback, and object classification. Finally, a hook-and-loop modular soft robotic framework enables rapid, reversible assembly of diverse robotic systems, supporting rapid prototyping and cross-material integration.

    Collectively, this work positions pneumatic circuits as foundational building blocks for next-generation soft robotic systems capable of embodied intelligence. By unifying actuation, sensing, logic, and modularity within compliant pneumatic architectures, the dissertation outlines a pathway toward scalable, adaptive, and electronics-free soft robotics suitable for wearable devices, autonomous manipulation, and distributed fluidic computation.

    List of papers
    1. Electronics-free Pneumatic Interface for Sensorimotor Human-Robot Interaction
    Open this publication in new window or tab >>Electronics-free Pneumatic Interface for Sensorimotor Human-Robot Interaction
    (English)Manuscript (preprint) (Other academic)
    Keywords
    soft robotics, human-robot interaction, pneumatic
    National Category
    Robotics and automation Engineering and Technology
    Identifiers
    urn:nbn:se:uu:diva-575075 (URN)
    Available from: 2026-01-08 Created: 2026-01-08 Last updated: 2026-01-11
    2. Miniaturized Multifunctional Valves for Intelligent Pneumatic Systems in Soft Robotics
    Open this publication in new window or tab >>Miniaturized Multifunctional Valves for Intelligent Pneumatic Systems in Soft Robotics
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Robotics and automation
    Identifiers
    urn:nbn:se:uu:diva-575395 (URN)
    Available from: 2026-01-11 Created: 2026-01-11 Last updated: 2026-01-11
    3. Miniaturized Soft Pneumatic Actuator Matrix with Multiplexing Control
    Open this publication in new window or tab >>Miniaturized Soft Pneumatic Actuator Matrix with Multiplexing Control
    2025 (English)In: Advanced robotics research, E-ISSN 2943-9973, article id 202400015Article in journal (Refereed) Epub ahead of print
    Abstract [en]

    Soft robotics has recently attracted increasing attention due to its inherent softness and compliance. However, to fully realize their potential, it often requires numerous soft components and actuators. One major challenge for a large-scale system is integration and miniaturization. In addition, for pneumatically controlled actuators, multiplexing is essential to reduce the tubing from the control valves. A miniaturized soft pneumatic actuator matrix (SPAM) with multiplexing control of   crossing points by only   control signals was realized by embedding two layers of interactive channels ( ) in a soft material (PDMS) to form actuators ( ) by cumulating both strokes and forces at the channel crossings, unlike piston-based serially coupled gas-springs that yield constant force. A SPAM prototype of   actuators with   control signals was studied. A SPAM was demonstrated in a tilting matrix and two coupled SPAMs were used in a pneumatic soft conveyor for planar manipulation. Its simplicity and size allow for future large-scale integration in soft robotics.

    Place, publisher, year, edition, pages
    Wiley-VCH Verlagsgesellschaft, 2025
    National Category
    Control Engineering Materials Engineering
    Identifiers
    urn:nbn:se:uu:diva-547431 (URN)10.1002/adrr.202400015 (DOI)
    Funder
    Swedish Foundation for Strategic Research, CHI19-00
    Available from: 2025-01-15 Created: 2025-01-15 Last updated: 2026-01-11
    4. A Hot-plugging pinch valve with pressure-controlled logical functions
    Open this publication in new window or tab >>A Hot-plugging pinch valve with pressure-controlled logical functions
    2024 (English)Conference paper, Oral presentation only (Other academic)
    Abstract [en]

    Soft wearable robots utilize innovative textiles to create a mechanically active interface with the human body. Compared to exoskeletons, they are more comfortable because they do not constrain the wearer’s joints with rigid structures. These robots are lightweight, conformal, and compliant. With minimal disturbance, they can not only enhance the abilities of healthy individuals by improving walking or lifting efficiency, but also assist those with muscle weakness or physical and neurological disorders. They can also be used in high-force kinesthetic haptics for training and entertainment. However, the miniaturization and integration of a large-scale and complex control system, with bulky and heavy actuators and energy units, pose significant challenges before the wearer can move autonomously in a soft wearable robotic suit. One aspect of these challenges is that the control valve is typically rigid and bulky. 

    To address this issue, designing proper valves is crucial. Research on valves has grown significantly, displaying examples such as soft bi-stable valves and logic-enabled valves integrated with textiles. However, integrating these valves into pneumatic systems typically requires cutting out the tubing and reconnecting it. This process introduces considerable workload and increases the risk of leakage, especially in high-pressure applications. In the design and prototyping of wearable soft robots, the functionality and ease of application of control valves are greatly enhanced if they can be integrated into an operational system, for example, through a hot-plugging feature. 

    In this work, we proposed a type of pinch valve with several notable characteristics. The basic working principle is that a silicone elastomer tube is pinched between a stiff ridge and a stiff plate, separately controlled by two soft pneumatic actuators. The application of the valve is significantly enhanced by a slotted frame, which provides a hot-plugging function as it allows the operational tube to be inserted into the valve without being cut. The valve is characterized by three crucial properties: (i) Flexibility in integration: the hot-plugging function allows for flexible integration of the valve into the system. (ii) Pressure control: it has the capability to open and close high-pressure systems using a lower control pressure, with a pressure ratio of at least 5. (iii) Logical functions: by controlling the pressure of the independent control actuators, the valve supports logical functions of NOT, NAND, and NOR gates, without the need to alter the pneumatic connections. Leveraging the NAND gate’s ability to detect when a signal input goes low, we demonstrated that the valve, with its NAND gate, can transform an unsecured gripper into a secured gripper.

    Place, publisher, year, edition, pages
    USA: , 2024
    Keywords
    Hot-plugging functions, logical functions, pinch valves, soft robotics
    National Category
    Textile, Rubber and Polymeric Materials Applied Mechanics
    Identifiers
    urn:nbn:se:uu:diva-545505 (URN)
    Conference
    MATERIALS RESEARCH SOCIETY
    Funder
    Swedish Foundation for Strategic Research, CHI19-00
    Available from: 2024-12-17 Created: 2024-12-17 Last updated: 2026-01-11
    5. Hot-Plugging Logic-Enabled Valves
    Open this publication in new window or tab >>Hot-Plugging Logic-Enabled Valves
    2025 (English)In: Advanced intelligent systems, ISSN 2640-4567, Vol. 7, no 6, article id 2400582Article in journal (Refereed) Published
    Abstract [en]

    Soft pneumatic robotics are emerging as a transformative force in the field ofwearable robotics, especially for their ability to deliver high-force kinesthetichaptics using lightweight, soft, and compliant materials. Despite theseadvancements, the miniaturization of these systems and the integration ofcomplex, large-scale actuators pose significant challenges. Therefore, thisresearch proposes a novel hot-plugging logic-enabled pinch valve to facilitateseamless valve integration without disrupting the existing pneumatic system.The valve design incorporates a frame equipped with slots for two pneumaticactuators (PAs). A third slot positioned between these two actuators enables hotplugging capabilities for the operational elastic tubing pinched between theactuators. This configuration allows the control of higher operational pressureswhile operating at lower control pressures, achieving an impressive gain of up toeight and a maximum operational frequency of 1 Hz. Furthermore, by utilizing twoPAs and adjusting the control pressure, the valve can execute a range of logicalfunctions, including NOT, NAND, and NOR, without modifying its pneumaticconnections. The NAND function of the valve is successfully demonstrated as ittransforms an unsecured gripper into a secured one, showcasing its practicalimplications for enhancing functionality in soft pneumatic robotic systems.

    Place, publisher, year, edition, pages
    John Wiley & Sons, 2025
    Keywords
    soft robotics, logics, pneumatic valve
    National Category
    Textile, Rubber and Polymeric Materials
    Research subject
    Engineering Science with specialization in Materials Science
    Identifiers
    urn:nbn:se:uu:diva-553538 (URN)10.1002/aisy.202400582 (DOI)001455614200001 ()2-s2.0-105001120029 (Scopus ID)
    Funder
    Swedish Foundation for Strategic Research, CHI19-00
    Available from: 2025-03-28 Created: 2025-03-28 Last updated: 2026-01-11Bibliographically approved
    6. Hook-and-Loop Enabled Modular Soft Robotics
    Open this publication in new window or tab >>Hook-and-Loop Enabled Modular Soft Robotics
    (English)Manuscript (preprint) (Other academic)
    Keywords
    modular soft robotics, hook-and-loop
    National Category
    Robotics and automation Engineering and Technology
    Identifiers
    urn:nbn:se:uu:diva-575076 (URN)
    Available from: 2026-01-08 Created: 2026-01-08 Last updated: 2026-01-11
    7. Peristaltic Normally Open and Normally Closed Valves for Reconfigurable & Programmable Soft Pneumatic Logics
    Open this publication in new window or tab >>Peristaltic Normally Open and Normally Closed Valves for Reconfigurable & Programmable Soft Pneumatic Logics
    2025 (English)Conference paper, Oral presentation only (Other academic)
    Abstract [en]

    Pneumatically actuated soft robotics hold great potential across a wide range of applications, including assistive devices for rehabilitation, haptics, soft grippers, and wearable robots. This is because pneumatics offers high force output, greater energy density, and inherent compliance. In addition, mechanical energy harvesting is most efficient when energy is stored directly as compressed air, avoiding intermediate conversion to electricity. Using soft polymers or fabrics, such fluid power systems enable actuation and sensing—such as force and displacement—through specially designed chambers that allow for gas volume changes. Recently, to replace rigid electronics, fluid circuits have garnered significant attention in the field of soft robotics. Researchers have demonstrated autonomous robots powered by fluid circuits, underscoring the promise of soft robotic logic. 

    Despite the demonstrated potential and progress of soft pneumatic logics, several challenges remain. One major concern is that most pneumatic logic gates are only reconfigurable—meaning that they require manual hardware changes, such as switching the tubing to the inputs of an AND gate between ports to realize an OR gate. Instead, the few systems that are programmable (e.g., changing a valve’s logic function by adjusting control pressures) typically lack reconfigurability. Another issue is that most research focuses solely on normally open valves. As discussed by Preston et al. and Song et al., this design increases a risk of fluidic energy leakage under steady-state conditions, potentially compromising system efficiency and reliability. Additionally, as presented in our paper ‘Hot-plugging Logic-enabled Valve’, cutting tubing and inserting a valve present challenges for reconfigurability by introducing leakage risks and adding to the workload when mending the tubing—especially in high-pressure systems. 

    To resolve the issues mentioned earlier, we forward our work on hot-plugging logic valves by presenting normally open and normally closed valves that provide four major features. (1) The valves share similar geometries, but the normally closed valves are kept closed with the help of two elastic bands on the top. The two types of valves provide logic complementarity: A normally open valve provides either a NAND gate or a NOR gate. A normally closed valve provides either an AND gate or an OR gate. (2) Combining normally open and normally closed valves in the pneumatic logics bring more opportunities in reconfigurability and programmability. The design allows the logic functions of each valve to be reconfigured by changing the size of the control units. At the same time, it supports the logic functions to be programmed by adjusting the control pressures of the control units. Together, this allows the presented logics to have individual valves that function as either an AND, OR, NAND, or NOR gate using either a reconfigurable or programmable approach. (3) Using a peristaltic design, by inserting the operational pneumatic tubing into the valve instead of cutting tubing and inserting a valve between the two cut segments, there is no risk for leakage. (4) High gain. We define gain as  , which was up to 10. It provides great opportunities to ease control in high-pressure systems by using lower control pressures. Furthermore, our valves were also featured with fast switching times, which were down to 17 ms. 

    To conclude, these valves introduce novel adaptability within soft pneumatic logics. It enables modification of logic functions through either reconfiguration or programming, all while preserving the integrity and functionality of the operational pneumatic system—even when a valve is removed or repositioned.

    Place, publisher, year, edition, pages
    Boston, USA: , 2025
    National Category
    Engineering and Technology Textile, Rubber and Polymeric Materials
    Identifiers
    urn:nbn:se:uu:diva-566444 (URN)
    Conference
    MATERIALS RESEARCH SOCIETY
    Funder
    Swedish Foundation for Strategic Research, CHI19-00
    Available from: 2025-09-04 Created: 2025-09-04 Last updated: 2026-01-11
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  • Public defence: 2026-02-27 09:15 A1:111a, Uppsala
    Echeverry, Santiago
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Cell Biology.
    Molecular determinants of insulin granule release probability2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Insulin release is crucial for glucose homeostasis, and its impairment leads to hyperglycemia and contributes to the development of type 2 diabetes. Pancreatic β-cells release insulin through Ca²+-triggered exocytosis, a process in which insulin-containing secretory granules dock at the plasma membrane, form molecular interactions that prepare the granule for release (priming), and fuse the plasma membrane following an elevation in intracellular Ca²+. Granule priming is regulated by secondary messengers, which confer cellular plasticity and allow β-cells to respond to their physiological context. However, the molecular mechanisms of insulin granule priming and its connection to secondary messengers are incompletely understood. This thesis investigates the molecular machinery governing insulin granule priming in dispersed β-cells through analysis of granule dynamics and exocytosis. We show that munc13 regulates granule priming through its dynamic recruitment to the plasma membrane in response to Ca²+ and diacylglycerol produced by cellular activity and signaling. Granules capable of release recruit, on average, six munc13 molecules. Once recruited to granules, Ca²+ binding to munc13 transiently increases granule release probability, thereby facilitating exocytosis. Furthermore, we demonstrate that elevated intracellular Ca²+ facilitates exocytosis in both diabetic and non-diabetic human β-cells. However, electrical activity alone failed to evoke Ca²+-dependent facilitation in human β-cells. Using quantitative microscopy and photoactivated localization microscopy, we estimated the copy number and localization of proteins at the granule docking site. We found that primed and unprimed granules differ in the abundance of munc13, RIMs, and liprinα-1. In addition, these proteins localize toward the center of the docking site, surrounding the core fusion machinery. Their lateral diffusion is slowed at the docking site center, suggesting binding to the fusion core machinery. Finally, we observed that syntaxin, a core fusion protein, binds to and diffuses freely together with its chaperone munc18 before arriving at the granule docking site. We conclude that insulin granules primed require recruitment of proteins to the granule docking site, as well as activation of these proteins by secondary messengers. Ultimately, priming is controlled by intracellular Ca²+ concentration through a mechanism dependent on munc13 translocation and activation, and dispersed human β-cells are capable of secretory Ca²+-dependent secretory facilitation.

    List of papers
    1. Dynamic recruitment of Munc13 primes docked secretory granules for exocytosis
    Open this publication in new window or tab >>Dynamic recruitment of Munc13 primes docked secretory granules for exocytosis
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    2025 (English)In: Cell Reports, ISSN 2639-1856, E-ISSN 2211-1247, Vol. 44, no 10, article id 116301Article in journal (Refereed) Published
    Abstract [en]

    Munc13 proteins are essential for regulated exocytosis in neurons and endocrine cells. They consist of an elongated MUN domain that templates SNARE complex formation during priming, flanked by regulatory membrane-associated C1 and C2 domains. Here, we show, using quantitative high-resolution imaging, that priming of insulin granules coincides with recruitment of on average six copies of Munc13 to individual docked granules, similar to estimates of SNARE complexes formed during exocytosis. Intracellular Ca2+- or lipid-signaling accelerates granule priming by promoting C2B-dependent translocation of Munc13 to the plasma membrane, followed by slower (tens of seconds) C2A-domain dependent accumulation at docked granules. Exocytosis in human β-cells also exhibits rapid Ca2+-dependent short-term facilitation that involves Ca2+/C2B-dependent activation of Munc13 but not further accumulation at the release site. Thus, Munc13 controls secretory granule release probability by two separate C2B-dependent mechanisms that affect its recruitment to the release site and its subsequent activation by Ca2+.

    Place, publisher, year, edition, pages
    Elsevier, 2025
    National Category
    Medical Biotechnology (Focus on Cell Biology, (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
    Research subject
    Biology with specialization in Molecular Biotechnology
    Identifiers
    urn:nbn:se:uu:diva-574439 (URN)10.1016/j.celrep.2025.116301 (DOI)001576696800005 ()40971291 (PubMedID)
    Funder
    Novo Nordisk FoundationSwedish Research CouncilDiabetesfondenSwedish Child Diabetes FoundationEXODIAB - Excellence of Diabetes Research in SwedenInsamlingsstiftelsen Diabetes WellnessErnfors Foundation
    Available from: 2025-12-31 Created: 2025-12-31 Last updated: 2026-01-30Bibliographically approved
    2. Stoichiometry and location of proteins at the insulin granule exocytosis site
    Open this publication in new window or tab >>Stoichiometry and location of proteins at the insulin granule exocytosis site
    (English)Manuscript (preprint) (Other academic)
    Keywords
    Exocytosis, SNARE, PALM, Super-resolution microscopy, Quantitative microscrospy, β-cells
    National Category
    Cell and Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-574596 (URN)
    Available from: 2026-01-06 Created: 2026-01-06 Last updated: 2026-01-12
    3. Electrical activity and Ca2+ dependent plasticity in human pancreatic β-cells
    Open this publication in new window or tab >>Electrical activity and Ca2+ dependent plasticity in human pancreatic β-cells
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    (English)Manuscript (preprint) (Other academic)
    Keywords
    β-cell, Ca2+-dependent exocytosis, priming, Munc13, short-term plasticity.
    National Category
    Cell and Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-574598 (URN)
    Available from: 2026-01-06 Created: 2026-01-06 Last updated: 2026-01-12
    4. Functional differences of Munc18 isoforms during insulin granule exocytosis reflect their affinities for the release site
    Open this publication in new window or tab >>Functional differences of Munc18 isoforms during insulin granule exocytosis reflect their affinities for the release site
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Cell and Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-542454 (URN)
    Available from: 2024-11-11 Created: 2024-11-11 Last updated: 2026-01-12
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  • Public defence: 2026-02-27 10:00 Hambergsalen, Uppsala
    Osuji, Nicholas Izuchukwu
    Uppsala University, Disciplinary Domain of Science and Technology, Earth Sciences, Department of Earth Sciences, Air, Water and Landscape Sciences.
    Flow, Transport and Deformation in 3D Fractured Media: Sensitivity to Model Conceptualization2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Predictive modeling of fluid flow and solute transport in fractured rock is central to many subsurface applications, including nuclear waste isolation, geothermal energy, carbon storage, and hydrocarbon recovery. Such predictions depend strongly on the conceptualization of fractured media and on the assumptions used in model formulations. This thesis investigates how conceptual modeling choices influence the analysis of fluid flow, mass transport, and mechanical deformation behaviors in three-dimensional fracture networks by examining four key sources of uncertainty: multiscale anisotropy, geomechanical model simplification, mechanical boundary conditions, and ensemble structure and variability for modeling flow and transport in fractured rocks.

    Results demonstrate firstly that fracture-scale and network-scale anisotropy features interact in a non-linear manner. Alignment between the two scales enhances preferential flow, while misalignment suppresses connectivity and delays transport, producing travel-time differences of up to two to three orders of magnitude even for networks with similar equivalent permeability. Secondly, simplified geomechanics models (omitting fracture nonelastic deformation, stress variability, and fracture interaction) fail to capture complex stress-induced deformation of fractures under high stress ratio conditions, leading to underestimation of flow capacity and faster transport pathways, although they may remain robust for low stress ratios. The findings highlight that the validity of geomechanical simplification is strongly stress-dependent. Thirdly, mechanical boundary-condition effects are negligible for networks dominated by smaller fractures but become significant in networks containing larger fractures, especially under strongly anisotropic stress conditions. The higher connectivity of larger fractures allows boundary-induced stresses to propagate deeper into the system, resulting in stronger deformation, increased aperture, and enhanced transport. Fourthly, we investigate the ensemble structure and variability of flow and transport in fracture networks with varying connectivity. A suite of statistical metrics is introduced to quantify deviations of realizations from the ensemble average. We show that near the percolation threshold, strong variability among realizations limits the reliability of ensemble-averaged predictions. This variability diminishes away from the percolation threshold.

    This thesis shows that flow and transport predictions in fractured rock systems are highly sensitive to model conceptualization and assumptions, highlighting the need for robust and uncertainty-aware modeling frameworks to guide model selection and evaluation for subsurface engineering applications.

    List of papers
    1. Impact of multiscale anisotropy on flow and transport in three-dimensional fracture networks
    Open this publication in new window or tab >>Impact of multiscale anisotropy on flow and transport in three-dimensional fracture networks
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    2025 (English)In: Hydrogeology Journal, ISSN 1431-2174, E-ISSN 1435-0157, Vol. 33, no 6, p. 1501-1528Article in journal (Refereed) Published
    Abstract [en]

    Anisotropy, as an intrinsic characteristic of naturally fractured rocks, is present across multiple length scales and can significantly affect hydrogeological processes within subsurface rocks. In this paper, the impact of multiscale anisotropy on flow and transport in fractured rocks is investigated using a three-dimensional discrete fracture network model. Anisotropy at the single fracture scale is governed by the ratio of correlation lengths (λ) of the aperture field, while the network-scale is controlled by the Fisher constant (κ) of fracture orientations. Steady-state flow and conservative solute transport is computed for model ensembles with different combinations of the anisotropic parameters, i.e., λ = 0.5, 1, 2, 3, and κ = 1, 25, 50. Results show that the key flow and transport parameters such as median travel time, equivalent permeability, effective porosity and flow channeling are significantly influenced by variations in λ and κ. Notably, for the same effective permeability, the median travel time can vary by three orders of magnitude. More isotropic systems tend to have longer travel times, while the least variability in travel times is observed at the extremes of permeability. Additionally, λ and κ exhibit a complementary effect, where high values of both significantly enhance flow connectivity, reducing median travel times by nearly two orders of magnitude. In contrast, low λ and κ significantly reduces flow connectivity, leading to longer and more tortuous flow paths and delayed solute breakthrough times. These findings indicate the importance of accounting for multiscale anisotropy to better capture complex hydrogeological processes in fractured media.

    Place, publisher, year, edition, pages
    Springer, 2025
    Keywords
    Fractured rocks, Anisotropy, Aperture distribution, Fracture orientation, Solute transport
    National Category
    Geotechnical Engineering and Engineering Geology
    Research subject
    Hydrology; Geophysics with specialization in Solid Earth Physics
    Identifiers
    urn:nbn:se:uu:diva-566675 (URN)10.1007/s10040-025-02940-0 (DOI)001551642600001 ()2-s2.0-105013474798 (Scopus ID)
    Funder
    Uppsala University
    Available from: 2025-09-08 Created: 2025-09-08 Last updated: 2026-01-11Bibliographically approved
    2. Impact of Geomechanics Model Simplifications on Assessing Flow and Transport in 3D Fracture Networks
    Open this publication in new window or tab >>Impact of Geomechanics Model Simplifications on Assessing Flow and Transport in 3D Fracture Networks
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    2025 (English)In: International Journal for Numerical and Analytical Methods in Geomechanics, ISSN 0363-9061, E-ISSN 1096-9853, Vol. 49, no 17, p. 4023-4034Article in journal (Refereed) Published
    Abstract [en]

    Changes in subsurface stress conditions induce fracture aperture changes, altering the hydraulic properties of fractured rocks.Due to the high computational cost of full 3D geomechanical modeling, simplified models are usually adopted, using twomain simplifications, namely (i) calculating local stresses on a fracture by projecting far-field stresses onto individual fractureplanes without considering nearby fractures, and (ii) assuming a linear elastic fracture mechanics-based constitutive lawfor fracture shearing. In this study, we investigate the consequences of using these geomechanical model simplifications onassessing flow and transport in 3D fractured media by comparing the simplified model against a full geomechanical modelthat integrates local stress heterogeneity and a Coulomb-type shear behavior. We explore varying stress conditions to determinewhen the simplified model closely aligns with the full model, and when and why it starts to deviate. Our results indicatethat, for an assumed typical friction coefficient of 0.6 and shear stiffness of 10 GPa/m, under stress ratios of 1 to 3, sheardeformation is in the elastic stage, and local stress variability does not result in significant differences between simplified andfull models. However, at a high stress ratio (e.g., 4), plastic shear slip prevails, and a significant difference between the twomodels emerges. The full model accommodates more intense shear displacements, resulting in increased aperture heterogeneity,enhanced flow channeling, and earlier solute breakthrough, while the simplified model underestimates these effects. Ourresults suggest that great caution is needed when applying simplified models in practice, especially when the stress ratio is high.

    Place, publisher, year, edition, pages
    John Wiley & Sons, 2025
    Keywords
    fluid flow, fracture aperture, fracture network, shear dilation, solute transport, stress
    National Category
    Geotechnical Engineering and Engineering Geology Geophysics Environmental Sciences
    Identifiers
    urn:nbn:se:uu:diva-566612 (URN)10.1002/nag.70057 (DOI)001563266700001 ()2-s2.0-105014592347 (Scopus ID)
    Available from: 2025-09-06 Created: 2025-09-06 Last updated: 2026-01-11Bibliographically approved
    3. Influence of geomechanical loading configuration on modeling stress-dependent flow and transport in 3D fractured rocks.
    Open this publication in new window or tab >>Influence of geomechanical loading configuration on modeling stress-dependent flow and transport in 3D fractured rocks.
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    (English)Manuscript (preprint) (Other academic)
    Keywords
    geomechanics modelling, boundary conditions, fracture networks, aperture changes, flow and transport
    National Category
    Geotechnical Engineering and Engineering Geology Oceanography, Hydrology and Water Resources
    Research subject
    Hydrology
    Identifiers
    urn:nbn:se:uu:diva-575386 (URN)
    Funder
    Swedish Radiation Safety Authority, SSM2021-1540 and SSM2023-4426
    Available from: 2026-01-11 Created: 2026-01-11 Last updated: 2026-01-11
    4. Ensemble structure and variability in modeling flow and transport in 3D fractured porous media
    Open this publication in new window or tab >>Ensemble structure and variability in modeling flow and transport in 3D fractured porous media
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    (English)Manuscript (preprint) (Other academic)
    Keywords
    ensemble structure, variability, percolation parameter, ensembe average, flow and transport, fracture networks
    National Category
    Oceanography, Hydrology and Water Resources Geotechnical Engineering and Engineering Geology
    Research subject
    Hydrology
    Identifiers
    urn:nbn:se:uu:diva-575387 (URN)
    Funder
    Swedish Radiation Safety Authority, SSM2021-1540 and SSM2023-4426
    Available from: 2026-01-11 Created: 2026-01-11 Last updated: 2026-01-11
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  • Public defence: 2026-02-27 10:00 Humanistiska teatern, Uppsala
    Lindgren, Matilda
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Arts, Centre for Gender Research. Uppsala University.
    Caring for conception: The ontological politics of gamete donation practices in Sweden2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    This thesis examines reproductive decision-making in practices of egg and gamete donation. Adopting a multi-sited ethnographic approach and drawing on Annemarie Mol’s empirical philosophy, the thesis analyses policy documents, focus group discussions with fertility practitioners, and individual interviews with donors and recipients. 

    A focus of the thesis is to show how politics emerge from the various enactments of kinship and medical categories as deployed in practices of reproductive donation. Departing from a relational ontology as suggested in Science and Technology Studies (STS), the thesis argues that the categories of children/parents, donors/recipients, and patients/providers are not given but need to be actively negotiated in legal texts, clinical practice, and patient narratives. By focusing on reproductive practices for single women, queer and lesbian couples in a Swedish context, the study explores how a practice-oriented reading of ontology enables a ‘queering’ of egg donation practices.

    Focusing on policy, the analysis shows that children’s right to donor information from the ‘special medical record’ is based on a temporal paradox and premised by a symbolic rather than material understanding of genetic relatedness, thereby failing to account for diverse needs within different family forms. Examining fertility practitioners’ clinical reasoning, the thesis further demonstrates how a standard model of egg donation – based on single donation to heterosexual couples – continues to shape clinical practice. Analysing donor and recipient narratives through Mol’s concept the logic of care, the thesis proposes that egg donation entails a form of dual patienthood. By showing how different enactments of kinship and medical categories become tied to different versions of the good and responsibility in reproductive decision-making, the thesis advances a practice-based analytical framework for studies on egg and gamete donation. 

    The thesis contributes to queer and feminist scholarship on reproductive decision-making by focusing on ontological politics and logics of care, thus placing questions of gamete donation in a new framework. Empirically, the thesis contributes knowledge on the usages of donor eggs among queer and lesbian couples in Sweden. The first study to examine fertility practitioners’ reasoning following Sweden’s legal change on combined gamete donation, it also offers recommendations for policy and practice.

    List of papers
    1. Patients, citizens and consumers: logics of choice and care in Swedish egg donation narratives
    Open this publication in new window or tab >>Patients, citizens and consumers: logics of choice and care in Swedish egg donation narratives
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    This interview-based study, conducted in Sweden, advances feminist and queer scholarly debates on the logics of choice and care in medically assisted reproduction. It focuses on conception with donor eggs as a reproductive method, where the medical scenarios entail that decision-making in clinical practice and family-making intertwine. In addition, it examines experiences of both receiving and donating eggs or gametes across the life span. Drawing on Annemarie Mol’s critique of choice logics and autonomous decision-making in care practices, we argue for the value of centring patienthood within feminist scholarship on egg donation. Our analysis demonstrates that the positive sense of patienthood reported by egg donors in public clinics—who repeatedly emphasised that they were well cared for—was contingent upon their utility to the clinic. Turning to recipient narratives, we show how becoming a consumer of fertility care involved a shift in responsibility for the practice. Our findings reveal a paradox: when interviewees travelled outside Sweden to access donor gametes, the consumer logic that expanded their choices simultaneously diminished their position as patients. This, we suggest, exemplifies Mol’s argument that choice does not necessarily equate to better care.

    Keywords
    Egg donation, qualitative interviews, patientism, logics of care, dual patienthood, fertility travel, äggdonation, kvalitativa intervjuer, patientism, omsorgslogiker, dubbelt patientskap
    National Category
    Gynaecology, Obstetrics and Reproductive Medicine
    Identifiers
    urn:nbn:se:uu:diva-575369 (URN)
    Available from: 2026-01-10 Created: 2026-01-10 Last updated: 2026-01-21
    2. Egg donation beyond the standard model: fertility practitioners’ clinical reasoning in single, combined and shared treatment options in Sweden
    Open this publication in new window or tab >>Egg donation beyond the standard model: fertility practitioners’ clinical reasoning in single, combined and shared treatment options in Sweden
    2025 (English)In: Social Science and Medicine, ISSN 0277-9536, E-ISSN 1873-5347, Vol. 384, article id 118506Article in journal (Refereed) Published
    Abstract [en]

    The use of donor eggs, sperm and embryos in medically assisted reproduction (MAR) provide new possibilities for reproductive assistance and family-making. In clinical practice, it also brings to light questions of responsibility and ethical conduct. Despite this, fertility practitioners' reasoning in clinical decision-making remains surprisingly understudied. Drawing on Annemarie Mol's work on ontologies in medical practice (2002), we examine how fertility practitioners' clinical reasoning varies across different types of reproductive assistance involving donor eggs. Following Sweden's legal change on double gamete donation (2019), and drawing on data from focus group discussions with practitioners from public and private fertility clinics across Sweden our findings show that practitioners structured their clinical reasoning along pre-defined conceptualisations of the appropriate donor candidate and distinguished between social and medical indications for treatment. We contend that a standard model of egg donation, based on single donations for heterosexual couples, can be identified in health care decision-making. While double donation can fit this model, surplus embryo and partner donation (ROPA) challenge it, causing confusion and disruption in donor and recipient assessment processes. In this model, fertility and infertility is understood as inherent bodily conditions rather than shared or socially influenced situations. Consequently, the obstetric risks of donor-egg pregnancies are justified only on the ground of medical reasons. Our study contributes knowledge on how egg donation, as a medical procedure with certain health risks, can be practiced and conceptualized differently across the same clinical domain while also arguing for an analysis of inequity as embedded in practices. In our case, practitioners' dependency on conceptual and procedural conventions in donor and recipient assessments had an implicit reliance on heterosexual and nuclear understandings of conception and family, ultimately limiting the availability of treatment methods. These findings underscore the importance of attending to fertility practitioners' clinical reasoning in order to better understand issues of patient access and provider accountability.

    Place, publisher, year, edition, pages
    Elsevier, 2025
    Keywords
    Egg donation; Embryo donation; ROPA: Fertility practitioners; Clinical decision-making; Focus group discussions, äggdonation; embryodonation; ROPA; fertilitetsspecialister; kliniskt beslutsfattande; fokusgruppsintervuer
    National Category
    Health Sciences Gender Studies Gynaecology, Obstetrics and Reproductive Medicine
    Research subject
    Gender Studies; Sociology; Medical Science
    Identifiers
    urn:nbn:se:uu:diva-568734 (URN)10.1016/j.socscimed.2025.118506 (DOI)001582540700001 ()40915027 (PubMedID)2-s2.0-105014962318 (Scopus ID)
    Funder
    Uppsala University
    Available from: 2025-10-07 Created: 2025-10-07 Last updated: 2026-01-11Bibliographically approved
    3. Disciplined parents and autonomous children: information sharing as governing device in Swedish identity-release gamete donation
    Open this publication in new window or tab >>Disciplined parents and autonomous children: information sharing as governing device in Swedish identity-release gamete donation
    2024 (English)In: International Journal of Law, Policy and the Family, ISSN 1360-9939, E-ISSN 1464-3707, Vol. 38, no 1, article id ebad029Article in journal (Refereed) Published
    Abstract [en]

    This article analyses shifts and continuities in Swedish regulation of information sharing in identity-release donor conception. At a time when families include both solo and same-sex parenting, I draw on a practice-oriented method to compare legal and pre-legislative documents from the early 1980s with those of the late 2010s as developed in a Swedish national context. Following the turn to openness in donor conception, I discuss the practical implications of framing access to information from the hospitals' so-called 'special medical record' as a children's right, when information is in fact only available after 'maturity' is reached. Furthermore, I show how a significant change in the understanding of child–parent relationships in donor-conceived families is articulated in the 2019 legislation. If early policy documents portrayed donor-conceived children as potentially problematic for not 'knowing their origin', I argue that now it is parents in donor-conceived families who are constructed as potentially problematic. Drawing on critical kinship theory, I conclude that Swedish policy-making on information sharing in donor conception relies on a symbolic rather than material understanding of genetic relatedness that fails to acknowledge how different family forms might have different needs. Based on these findings, I suggest that policymakers take into account the implications a changing view on family life and genetics have for children and parents following donor conception.

    Place, publisher, year, edition, pages
    Oxford University Press, 2024
    Keywords
    Donor conception, Gamete and embryo donation, Family law, Public policy, Document analysis, Critical kinship studies, Solo mothers, Same-sex parents, Reproductive medicine, Könscellsdonation, embryodonation, familjelagstiftning, policy, dokumentanalys, kritiska släktskapsstudier, solo mödrar, samkönade föräldrar, föräldraskap genom donation, reproduktionsmedicin
    National Category
    Other Legal Research Criminology
    Research subject
    Gender Studies; Medical Law; Ethics; Obstetrics and Gynaecology
    Identifiers
    urn:nbn:se:uu:diva-525191 (URN)10.1093/lawfam/ebad029 (DOI)001178903700004 ()
    Funder
    Uppsala University
    Available from: 2024-03-18 Created: 2024-03-18 Last updated: 2026-01-11Bibliographically approved
    4. Donor-conception as field site: reflections on the shifting knowledge positionalities in a multi-sited ethnography
    Open this publication in new window or tab >>Donor-conception as field site: reflections on the shifting knowledge positionalities in a multi-sited ethnography
    2023 (English)In: Feminist ethnographies: methodological reflections in gender research / [ed] Linda Berg, Umeå: Umeå University, 2023, p. 59-75Chapter in book (Other academic)
    Place, publisher, year, edition, pages
    Umeå: Umeå University, 2023
    Keywords
    Feminist ethnography, Methodological Reflexivity, Research Ethics, Ethnography, Graduate Studies, Gender Studies, Feministisk etnografi, Metodologisk reflexivitet, Forskningsetik, Avhandlingsprojekt, Etnografi
    National Category
    Gender Studies
    Identifiers
    urn:nbn:se:uu:diva-518763 (URN)978-91-8070-116-7 (ISBN)978-91-8070-117-4 (ISBN)
    Available from: 2023-12-22 Created: 2023-12-22 Last updated: 2026-01-11
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  • Public defence: 2026-02-27 12:00 Sal IX, Uppsala
    Raffoul, Alexandre Wadih
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Peace and Conflict Research.
    The Logics of Multi-Ethnic Coalitions: Power-Sharing, Party Systems, and Ethnic Conflict Management2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Multi-ethnic coalition governments are a common prescription for societies affected by ethnic conflict. Yet ethnic power-sharing’s ability to deliver sustainable peace diverges widely between cases and across time. This dissertation asks: What explains variations in power-sharing’s ability to manage ethnic conflict? Building on pragmatist practice theory, the five essays that compose the dissertation develop an explanation that integrates and extends existing approaches – which focused on institutional design or power configurations – by shifting attention to what actors actually do when they share power. The dissertation argues that the distinct logics of ethnic conflict management that inform multi-ethnic coalitions explain their varying capacity to sustain peace. It introduces a previously underspecified type of multi-ethnic coalition: associational power-sharing, defined as multi-ethnic coalition governments in cross-ethnic party systems. Associational power-sharing manages ethnic conflict by reorienting political alliances away from ethnicity altogether, thereby reducing the risk of ethnic conflict through party-system-level guarantees against political exclusion. This logic of association contrasts with two other coalitional logics, each entailing distinct obligations, opportunities, and challenges: consociational power-sharing’s logic of pillarisation, which manages ethnic conflict by providing autonomous ethnic representation in a post-electoral coalition government; and centripetal power-sharing’s logic of moderation, which manages ethnic conflict by reinforcing ethnic moderates against extremists. Drawing on quantitative and qualitative evidence – including a novel dataset of multi-ethnic coalitions in Africa (1990–2020), comparative case studies of Northern Ireland and Burundi, and archival research and interviews in Mauritius – the dissertation shows that associational power-sharing is the most frequent type of ethnic power-sharing in Africa, is associated with longer periods of peace than its counterparts, and significantly decreases the probability of ethnic conflict onset. A key challenge, however, is that associational power-sharing is prone to tokenistic minority representation. The dissertation advances knowledge on constitutional design for ethnically divided societies by demonstrating that what matters is not only whether, but also how ethnic categories are included in government. It reframes the long-standing debate between consociationalism and centripetalism by recasting power-sharing types as demanding practices rather than rival models. It also highlights the central role of party system structure in stabilising ethnically divided societies. Overall, the dissertation adds associational power-sharing to the menu of ethnic conflict management practices available to conflict parties, peace mediators, and constitution-builders.

    List of papers
    1. Practicing Power‐Sharing: How Political Adversaries (Fail to) Rule Jointly
    Open this publication in new window or tab >>Practicing Power‐Sharing: How Political Adversaries (Fail to) Rule Jointly
    2025 (English)In: Nations and Nationalism, ISSN 1354-5078, E-ISSN 1469-8129, article id nana.13110Article in journal (Refereed) Published
    Abstract [en]

     Why does power-sharing lead to peace and effective governance in some cases but not others? Whereas the current literature on this question predominantly focuses on institutional design, this article argues that more attention should be given to the everyday activities, routines and processes through which power-sharing is operated. Defining power-sharing as a way of governing that combines inclusivity and joint decision-making, the article argues that variations in the performance of power-sharing result from the work deployed by various actors to achieve or resist elite cooperation across conflict lines. Three practices are essential in determining elites' ability to cooperate: the (convergent or divergent) socialization of power-holders, the (polarizing or unifying) representation of their supporters and the (constructive or obstructive) interpretation of power-sharing rules. This argument is evaluated empirically against two cases of post-conflict, ethnic power-sharing presenting variations in performance that cannot be explained by institutional design alone—Burundi and Northern Ireland.

    Keywords
    Burundi, institutional engineering, Northern Ireland, power-sharing, practice
    National Category
    Political Science
    Research subject
    Political Science
    Identifiers
    urn:nbn:se:uu:diva-571718 (URN)10.1111/nana.13110 (DOI)
    Available from: 2025-11-18 Created: 2025-11-18 Last updated: 2025-12-30
    2. Unstable Concepts, Unresolved Controversies: Reassembling Power-Sharing, Consociationalism, and Centripetalism
    Open this publication in new window or tab >>Unstable Concepts, Unresolved Controversies: Reassembling Power-Sharing, Consociationalism, and Centripetalism
    2025 (English)In: Nationalism & Ethnic Politics, ISSN 1353-7113, E-ISSN 1557-2986, Vol. 31, no 3, p. 313-333Article in journal (Refereed) Published
    Abstract [en]

    After half a century of research, the literature on institutional design for ethnic conflict management is still in search of a scientific consensus. This article argues that underlying conceptual issues hinder cumulative research on consociationalism to centripetalism. The reformulation of these concepts as "institutional packages" and their grouping under the label "power-sharing" have resulted in conceptual instability. Instead of contributing to gradually closing the controversy, empirical studies consequently lead to the proliferation of debates about case classification. Having identified these issues, the article formulates five recommendations to reassemble the concepts in a way that fosters constructive discussions in the field.

    Place, publisher, year, edition, pages
    Taylor & Francis, 2025
    National Category
    Peace and Conflict Studies
    Identifiers
    urn:nbn:se:uu:diva-566383 (URN)10.1080/13537113.2025.2488577 (DOI)001467864000001 ()
    Available from: 2025-09-08 Created: 2025-09-08 Last updated: 2025-12-30Bibliographically approved
    3. Associational Power-Sharing: Managing Ethnic Conflict with Cross-Ethnic Party Systems
    Open this publication in new window or tab >>Associational Power-Sharing: Managing Ethnic Conflict with Cross-Ethnic Party Systems
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Multi-ethnic coalition governments – or ethnic power-sharing – are among the most widely employed instruments of ethnic conflict management. Yet their effectiveness in sustaining peace varies markedly across cases. This article argues that these variations stem from the logic of the power-sharing coalition, which largely depends on whether power is shared through ethnically segmented or cross-ethnic party systems. Existing theories of ethnic power-sharing – consociationalism and centripetalism – focus primarily on contexts dominated by ethnic parties and therefore overlook how cross-ethnic party systems shape the dynamics of ethnic conflict. To fill this gap, the article reconstructs the typology of ethnic power-sharing to introduce the concept of associational power-sharing, which captures multi-ethnic coalitions rooted in cross-ethnic party systems. Drawing on an original dataset – the Ethnic, Electoral, and Executive Power-Sharing (EEE-PS) dataset – mapping all cases of consociational, centripetal, and associational power-sharing in Africa from 1990 to 2020, the study employs survival analysis to evaluate how each type affects the duration of peace. Challenging long-standing assumptions, the findings show that associational power-sharing is the most prevalent form of ethnic power-sharing in Africa and is associated with longer periods of peace than its counterparts, even in post-conflict settings.

    Keywords
    Power-sharing, Associational power-sharing, Multi-ethnic parties, Ethnic conflict management, Peace duration
    National Category
    Peace and Conflict Studies Political Science (Excluding Peace and Conflict Studies)
    Identifiers
    urn:nbn:se:uu:diva-574370 (URN)
    Available from: 2025-12-30 Created: 2025-12-30 Last updated: 2025-12-30
    4. Appeasement, Reassurance, and Demobilisation: How Cross-Ethnic Party Systems Prevent Ethnic Conflict Onset
    Open this publication in new window or tab >>Appeasement, Reassurance, and Demobilisation: How Cross-Ethnic Party Systems Prevent Ethnic Conflict Onset
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    We know a great deal about how consociational and centripetal power-sharing manage ethnic conflict, but far less about whether, when and how associational power-sharing – ethnic power-sharing in cross-ethnic party systems – does so. This article argues that associational power-sharing reduces the risk of ethnic conflict onset through three mechanisms rooted in its multi-ethnic party-system structure: it appeases ethnic tensions by discouraging ethnic outbidding during electoral campaigns; reassures members of all ethnic categories by providing guarantees against post-electoral exclusion; and demobilises violent actors by creating obstacles to violent ethnic mobilisation. I test these claims using a three-step mixed-methods design that combines logistic regression analyses of an original dataset on multi-ethnic coalitions in Africa (1990–2019) with process-tracing in “at-risk” elections in Burundi (2005) and Mauritius (1976). The cross-national results show that associational power-sharing is associated with a substantially lower probability of ethnic conflict onset. Reassurance emerges as the central mechanism; appeasement operates mainly indirectly by reinforcing reassurance; and demobilisation is primarily relevant in post-conflict settings. The article contributes to the power-sharing literature by shifting attention to the critical moments when coalitions are recomposed: elections – demonstrating that cross-ethnic party systems can play a critical role to stabilise these high-risk democratic junctures.

    Keywords
    power-sharing; party-systems; ethnic conflict management; Burundi; Mauritius
    National Category
    Peace and Conflict Studies Political Science (Excluding Peace and Conflict Studies)
    Identifiers
    urn:nbn:se:uu:diva-574371 (URN)
    Available from: 2025-12-30 Created: 2025-12-30 Last updated: 2025-12-30
    5. Minority Representation via Cross-ethnic Party Systems: Following the Malaise Créole in Mauritius
    Open this publication in new window or tab >>Minority Representation via Cross-ethnic Party Systems: Following the Malaise Créole in Mauritius
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    The “exclusion-amid-inclusion” problem takes a distinctive form in associational power-sharing systems, where the political party system is not ethnically-segmented. In such contexts, ethnic minorities cannot rely on their own ethnic party to represent them, and risk being represented in merely tokenistic ways by multi-ethnic parties. This article examines how this risk can be mitigated by identifying the actors, practices, and affordances of associational power-sharing that made substantive minority representation possible “against the odds” in Mauritius. Despite a long history of tokenism, some degree of substantive representation of the Mauritian-Creole minority was unexpectedly achieved in the 2000s, notably through the establishment of a Truth and Justice Commission on the legacy of slavery and indentured labour. Building on archival research and interviews, we trace the controversy surrounding the malaise créole (Creole uneasiness) as a lens through which to study substantive representation in practice. Our findings suggest that, while associational power-sharing can enable tokenism, it also offers minorities unique avenues for achieving substantive minority representation. 

    Keywords
    Power-sharing, Mauritius, Multi-ethnic parties, Minority representation, Controversy mapping.
    National Category
    Peace and Conflict Studies Political Science (Excluding Peace and Conflict Studies)
    Identifiers
    urn:nbn:se:uu:diva-574372 (URN)
    Available from: 2025-12-30 Created: 2025-12-30 Last updated: 2025-12-30
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  • Public defence: 2026-02-27 13:15 A1:107a, Uppsala
    Simonsson, Anna
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences. Uppsala University.
    From material properties to aerosolisation propensity of adhesive mixtures for inhalation: On consecutive relationships between drug load, blend state and blend performance2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Pulmonary diseases are traditionally treated via inhaled aerosol delivery. One of the major current categories of inhalation therapy is dry powder inhalers (DPIs), which are powder-based, breath-actuated systems. The powder is often composed of the active drug mixed with carrier particles (usually lactose), generating so-called adhesive mixtures. Despite the long-standing use of dry powder inhalers, the production of mixtures reaching high dose efficiency remains challenging.

    As a means of describing the spatial distribution of drug particles with increasing drug load, a blend state model has earlier been developed. The rationale behind this model is to categorise mixtures according to their appearance and mechanical properties. The main goal of this thesis was to improve understanding of the influence of increased drug load on mechanical and aerosolisation properties from an extended point of view. This was achieved by varying both the intrinsic properties of the mixtures and the experimental conditions. 

    The appearance and properties of the mixtures were investigated mainly via imaging, powder packing and flowability tests, and impaction studies. The main findings indicated that the blend state model was applicable to all mixtures studied. Changes in the structure of the adhesive layer associated with transitions between blend states appeared to have a subsequent impact on both mechanical and aerosolisation properties for given mixtures, which was investigated via statistical methods. Improving knowledge regarding the impact of intrinsic mixture properties and their link to mixture performance could ideally be helpful in the optimisation of mixtures, allowing them to reach their maximum potential.

     

    List of papers
    1. Segregation in inhalable powders: Quantification of the effect of vibration on adhesive mixtures
    Open this publication in new window or tab >>Segregation in inhalable powders: Quantification of the effect of vibration on adhesive mixtures
    2023 (English)In: European journal of pharmaceutics and biopharmaceutics, ISSN 0939-6411, E-ISSN 1873-3441, Vol. 187, p. 107-119Article in journal (Refereed) Published
    Abstract [en]

    The objective of this investigation was to study the effect of induced vibrations on adhesive mixtures containing budesonide and salbutamol sulphate as active pharmaceutical ingredients (APIs) and Inhalacr 70 as carriers. A series of adhesive mixtures with varied fine concentrations (1–4%) was prepared for each API. Half of the adhesive mixture was stressed on a vibrating sieve under conditions resembling hopper flow. Based on scanning electron micrographs, it was concluded that Inhalacr 70 contains particles of two distinct shapes, one irregular with groves and valleys and the other more regular with well-defined edges. The dispersibility of the control and stressed mixtures was studied using a next generation impactor. The stressed mixtures containing 1 and 1.5% API displayed a significant reduction in fine particle dose (FPD) compared to the control. The reduction in FPD resulted from a loss of fines from the adhesive mixture during vibration and as a consequence of restructuring and self-agglomeration resulting in reduced dispersibility. However, no significant difference was observed for mixtures with larger weight fractions of fines (2 and 4% API) but these have a drawback of reduced fine particle fraction (FPF). It is concluded that vibrations induced on the adhesive mixtures during handling potentially have a significant effect on the dispersibility of the API and the total amount of drug delivered to the lungs.

    Place, publisher, year, edition, pages
    Elsevier, 2023
    Keywords
    Inhalation, Segregation, Formulation, Aerosolization
    National Category
    Pharmaceutical Sciences
    Identifiers
    urn:nbn:se:uu:diva-483087 (URN)10.1016/j.ejpb.2023.04.006 (DOI)000990247400001 ()
    Funder
    Vinnova, 2019-00048Swedish Research Council, 2019-00207
    Note

    De två första författarna delar förstaförfattarskapet

    Available from: 2022-08-30 Created: 2022-08-30 Last updated: 2026-01-11Bibliographically approved
    2. Effect of drug load on the aerosolisation propensity of binary adhesive mixtures for inhalation
    Open this publication in new window or tab >>Effect of drug load on the aerosolisation propensity of binary adhesive mixtures for inhalation
    2024 (English)In: International Journal of Pharmaceutics, ISSN 0378-5173, E-ISSN 1873-3476, Vol. 657, article id 124122Article in journal (Refereed) Published
    Abstract [en]

    The aim of this study was to investigate how the propensity for aerosolisation in binary adhesive mixtures was affected by the drug load, and to determine whether these findings could be linked to different blend states. Binary blends of two different lactose carriers, each with varying size and morphology, were prepared together with budesonide. In vitro aerosolisation studies were conducted at four different pressure drops, ranging from 0.5 to 4 kPa, utilising a Next Generation Impactor. Several dispersion parameters were derived from the relationship between the quantity of dispersed API and the pressure drop. The evolution of the parameters with drug load was complex, especially at low drug loads. While similar responses were observed for both carriers, the range of drug load that could be used varied significantly. The choice of carrier not only influenced the capacity for drug loading but also affected the spatial distribution of the API within the mixture, which, in turn, affected its aerosolisation propensity. Thus, the drug dispersion process could be linked to different configurations of the lactose carrier and budesonide in the blends, i.e. blend states. In conclusion, the study suggests that the concept of blend states can provide an explanation for the complex dispersion process observed in adhesive blends.

    Place, publisher, year, edition, pages
    Elsevier, 2024
    Keywords
    Carrier size and morphology, Drug load, Blend state, Fine particle fraction, Dispersibility, Rate of dispersion
    National Category
    Pharmaceutical Sciences
    Identifiers
    urn:nbn:se:uu:diva-531090 (URN)10.1016/j.ijpharm.2024.124122 (DOI)001233574100001 ()38621619 (PubMedID)
    Funder
    Swedish Research Council, 2019-00207
    Available from: 2024-06-13 Created: 2024-06-13 Last updated: 2026-01-11Bibliographically approved
    3. Packing and flow performance of binary adhesive mixtures for inhalation of different drug loads and their relationships to aerosolisation
    Open this publication in new window or tab >>Packing and flow performance of binary adhesive mixtures for inhalation of different drug loads and their relationships to aerosolisation
    2025 (English)In: International Journal of Pharmaceutics: X, E-ISSN 2590-1567, Vol. 10, article id 100358Article in journal (Refereed) Published
    Abstract [en]

    The aim of this study was twofold. First, to examine the mechanical properties (packing and flow) of a series of adhesive mixtures, consisting of two different lactose carriers and varying concentrations of budesonide, using a range of test methods. Second, to investigate if any of the test methods correlate with the dispersibility of the mixtures, i.e. the fine particle fraction and mass median aerodynamic diameter. The mechanical properties assessed included packing, shearing, permeability and compressibility. Dispersion data were generated using an impactor operated at two pressure drops (0.5 and 4 kPa). To explore correlations between the mixture properties, Principal Component Analysis and Pearson correlation were used as statistical tools. The different test methods yielded different property-drug load relationships, which can be classified into two groups: First, packing density and shearing properties, and second, permeability and compressibility. The methods in the first group produced markedly fluctuating property-drug load relationships, characterised by two distinct waves. This type of property-drug load relationship was similar to that observed in the dispersion experiments, and significant correlations were found between shearing properties and dispersibility. Thus, any correlations between mechanical and dispersion properties depend on the choice of the test method used. The underlying cause of this co-variation is the parallel effect of both the blend architecture and the structure of the adhesion layer on mechanical and dispersion properties.

    Place, publisher, year, edition, pages
    Elsevier, 2025
    Keywords
    Binary mixtures, Inhalation, Mechanical properties, Dispersion properties, Blend architecture, Flowability-dispersibility relationships
    National Category
    Paper, Pulp and Fiber Technology Pharmaceutical Sciences
    Identifiers
    urn:nbn:se:uu:diva-564514 (URN)10.1016/j.ijpx.2025.100358 (DOI)001534541700001 ()40718752 (PubMedID)2-s2.0-105010894238 (Scopus ID)
    Funder
    Vinnova, 2019-00048
    Available from: 2025-08-05 Created: 2025-08-05 Last updated: 2026-01-11Bibliographically approved
    4. Packing, flow and aerosolisation properties of binary adhesive mixtures containing micronised and spray-dried drugs
    Open this publication in new window or tab >>Packing, flow and aerosolisation properties of binary adhesive mixtures containing micronised and spray-dried drugs
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Basic Medicine
    Identifiers
    urn:nbn:se:uu:diva-575397 (URN)
    Available from: 2026-01-11 Created: 2026-01-11 Last updated: 2026-01-11
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  • Public defence: 2026-03-06 09:00 Sonja Lyttkens Sal, Ångströmlaboratoriet, Uppsala
    Beise, Jakob
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, High Energy Physics.
    Improving Supernova Neutrino Detection in IceCube-Gen2: Detection Prospects of Neutrino Fast-time Features and Novel Neutrino Energy Reconstruction Framework2026Doctoral thesis, monograph (Other academic)
    Abstract [en]

    Core-collapse supernovae are remarkable astrophysical phenomena emitting optical photons, gamma rays, neutrinos and in some scenarios, gravitational waves. Due to their weakly interacting nature, neutrinos can escape the dense core of a collapsing star, where electromagnetic radiation is trapped. Therefore, they carry direct information about the hydrodynamics and energy transport processes that govern the supernova explosion. A high-statistics neutrino observation is required to uncover the explosion mechanism and to constrain key physical parameters of the collapsing core. In particular, processes related to the shock-revival can produce rapid modulations of the neutrino luminosity and energy. 

    The IceCube Neutrino Observatory is a cubic kilometre telescope located at the South Pole. Due to its size, IceCube is highly sensitive to the low-energy, MeV neutrino burst from a supernova. When these neutrinos interact with the ice, they generate Cherenkov light, which is measured by an array of 5,160 optical modules. However, due to the high background noise from the optical sensors and the wide spacing between modules, individual neutrinos cannot be reconstructed. Instead, IceCube searches for a collective excess of the detection rate above the noise floor. In the long term, the IceCube will evolve into the next-generation neutrino telescope, called IceCube-Gen2. Encompassing, among other things, an optical array nearly eight times the size of the current IceCube and around 10,000 new sensors, IceCube-Gen2 will have unmatched statistics for nearby supernovae.

    In this thesis, we present results on the projected sensitivity of IceCube and IceCube-Gen2 in observing features in the neutrino light curve. By discussing the potential enhancement of wavelength shifters, we inform the decision-making process for future detector design. Furthermore, we have developed a framework for detailed simulations of supernova neutrino interactions and radioactive decays. This is the first step towards a full neutrino energy reconstruction using machine learning tools.

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  • Public defence: 2026-03-06 09:15 Häggsalen, Ångströmlaboratoriet, Uppsala
    Larsson, Lisa
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering.
    Additive Manufacturing of Biodegradable Magnesium Alloy WE43: Linking Process Parameters to Microstructure and Mechanical Performance2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Powder bed fusion – laser beam (PBF-LB) of magnesium (Mg) alloys, particularly WE43 (Mg-4wt%Y-3wt%RE-Zr), offers promising potential for biodegradable medical implants. This thesis investigates the influence of key process parameters in PBF-LB on the microstructure, residual stress, texture, and mechanical properties of alloy WE43 (Mg-4wt%Y-3wt%RE-Zr). This knowledge is intended to support the continued development and implementation of PBF-LB processed WE43 for applications in biodegradable medical implants. The effects of laser power, hatch distance, build size and orientation, as well as laser scan rotation, were systematically investigated. 

    Increased energy input through higher laser power promoted equiaxed dendritic grain formation, which enhanced tensile strength. Hatch distance could be optimized to maintain tensile properties even at lower laser powers, and influenced grain size, texture and distribution of secondary phases. Build direction had a large impact on the magnitude of the residual stresses, with larger builds in the vertical direction giving larger stress gradients throughout the sample. Tensile residual stresses were observed at the sample edges, correlating with reduced hardness in those regions compared to the bulk.

    Horizontally built specimens showed approximately 40% higher tensile strength (215 MPa vs 150 MPa) and about 20% higher elastic modulus (44 GPa vs 37 GPa) than vertically built ones, primarily due to the development of a strong basal texture along the build direction. This anisotropy implies that part orientation during PBF-LB has a significant impact on performance in service. It was demonstrated that laser scan rotation significantly influences the crystallographic texture, which has the potential to affect the mechanical response of the printed parts. Rotations of 67° and 90° maintain high densification and mechanical integrity while modifying texture. Rotations of 60° and 120° further demonstrate texture control, and a segmented chessboard strategy enhances compressive strength despite weaker texture, due to favourable pore distribution and dendritic grain formation. Conversely, limiting scan rotation to 0° or 180° results in poor densification (<99% relative density), compromising structural integrity. Together, the work included in the thesis provides a comprehensive foundation for PBF-LB considerations to achieve desirable microstructural and mechanical outcomes in WE43, supporting its potential use in biomedical applications.

    List of papers
    1. Higher Laser power improves strength but reduces corrosion resistance of Mg WE43 processed by powder bed fusion
    Open this publication in new window or tab >>Higher Laser power improves strength but reduces corrosion resistance of Mg WE43 processed by powder bed fusion
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    2024 (English)In: Materials Today Communications, ISSN 2352-4928, Vol. 39, article id 108979Article in journal (Refereed) Published
    Abstract [en]

    Powder bed fusion – laser beam (PBF-LB) of Mg alloys provides new possibilities for the production of complex structures with optimized designs, both for weight reduction in aerospace applications, as well as for patient-specific implants in orthopedic applications. However, even though numerous studies have been carried out on the topic, the influence of the individual PBF-LB process parameters on the microstructure and resulting material properties of Mg alloys remains ambiguous. Thus, this study aims to investigate the influence of laser power on the surface roughness, microstructure and resulting key material properties, namely corrosion resistance and mechanical performance. Samples were produced by PBF-LB from gas atomized Mg-4%Y-3%Nd-0.5%Zr (WE43) alloy powder, using three different laser powers: 60 W, 80 W, and 90 W. Contrary to expectation, the 90 W samples exhibited the highest degradation rate, while 60 W samples had the lowest, despite the latter having highest surface roughness and large internal pores. The higher degradation rate for the 90 W samples was instead found to stem from the near-surface microstructure. The higher energy input and subsequently reduced grain size, resulted in an increased amount of second phase precipitates than for the 60 W samples, thereby increasing the tendency for pitting via microgalvanic corrosion. For the tensile strength and elongation at break, the opposite trend was observed. Here, a reduction in grain size and an increase in precipitates for the 90 W samples were found to be beneficial. In conclusion, a definite influence of laser power on the formation of microstructure was observed, ultimately impacting the resulting corrosion and tensile properties of WE43. Future work should investigate the influence of other PBF-LB process parameters, with the aim of establishing an optimum balance between corrosion resistance and mechanical properties.

    Place, publisher, year, edition, pages
    Elsevier, 2024
    National Category
    Metallurgy and Metallic Materials
    Identifiers
    urn:nbn:se:uu:diva-508530 (URN)10.1016/j.mtcomm.2024.108979 (DOI)001237794100001 ()
    Funder
    Vinnova, 2019-05259Swedish Foundation for Strategic Research, FID17-0028Swedish Foundation for Strategic Research, GSn15 – 0008Vinnova, 2019-00029Swedish Research Council, 2021-04708
    Available from: 2023-08-03 Created: 2023-08-03 Last updated: 2025-10-15Bibliographically approved
    2. Laser hatch distance can tune corrosion behaviour and mechanical properties while maintaining in vitro biocompatibility of additively manufactured Mg alloy WE43
    Open this publication in new window or tab >>Laser hatch distance can tune corrosion behaviour and mechanical properties while maintaining in vitro biocompatibility of additively manufactured Mg alloy WE43
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Medical Materials
    Identifiers
    urn:nbn:se:uu:diva-569653 (URN)
    Available from: 2025-10-15 Created: 2025-10-15 Last updated: 2025-10-15
    3. On the relationship between process parameters and residual stress in large WE43 builds produced by PBF-LB
    Open this publication in new window or tab >>On the relationship between process parameters and residual stress in large WE43 builds produced by PBF-LB
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Metallurgy and Metallic Materials
    Identifiers
    urn:nbn:se:uu:diva-569446 (URN)
    Available from: 2025-10-14 Created: 2025-10-14 Last updated: 2025-10-15
    4. Leveraging laser powder bed fusion to alter texture and mechanical properties of magnesium alloy WE43
    Open this publication in new window or tab >>Leveraging laser powder bed fusion to alter texture and mechanical properties of magnesium alloy WE43
    2025 (English)In: Materials & design, ISSN 0264-1275, E-ISSN 1873-4197, Vol. 256, article id 114299Article in journal (Refereed) Published
    Abstract [en]

    The present work explored the potential of customizing the final part texture and mechanical properties of a biodegradable magnesium alloy (WE43, composition Mg-4 wt%Y-3 wt%Nd-0.5 wt%Zr) manufactured by laser beam powder bed fusion (PBF-LB). This was done by printing samples using two sets of laser scan strategies (670 and 900 rotation between consecutively scanned layers) and build directions (horizontal and vertically printed samples). Samples were characterized for density and microstructure, followed by in-depth texture analysis using both lab-based techniques and neutron diffraction measurements. The mechanical performance was evaluated through tensile testing. The findings in this work show that strong basal texture was generated in the build direction. This allowed for altering the mechanical strength of WE43, whereby horizontally built samples showed increased strength and Young's modulus under tensile loading in a direction normal to the basal texture. Laser scan strategy influences the overall texture, however with limited effect on the resulting mechanical properties for the two scan strategies under study. This study demonstrates the importance of sample design and build strategy for the resulting texture and final material properties.

    Place, publisher, year, edition, pages
    Elsevier, 2025
    Keywords
    Laser beam powder bed fusion, WE43, Magnesium, Texture, Mechanical properties
    National Category
    Metallurgy and Metallic Materials
    Identifiers
    urn:nbn:se:uu:diva-563636 (URN)10.1016/j.matdes.2025.114299 (DOI)001522100600001 ()2-s2.0-105008968519 (Scopus ID)
    Funder
    Swedish Foundation for Strategic ResearchVinnova, 2019-00029Swedish Research Council, 2022-03069
    Available from: 2025-07-14 Created: 2025-07-14 Last updated: 2025-10-15Bibliographically approved
    5. The role of laser scan rotation in additive manufacturing of Mg-RE alloy WE43
    Open this publication in new window or tab >>The role of laser scan rotation in additive manufacturing of Mg-RE alloy WE43
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Metallurgy and Metallic Materials
    Identifiers
    urn:nbn:se:uu:diva-569652 (URN)
    Available from: 2025-10-15 Created: 2025-10-15 Last updated: 2025-10-15
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  • Public defence: 2026-03-06 09:15 H:son Holmdahlsalen, Uppsala University hospital, entrance 100, 2nd floor, Uppsala
    Dimander, Josefin
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Plastic Surgery.
    Nutritional therapy post-burn injury: Adherence to guidelines and an analysis of nutritional interventions and barriers2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Objective: Insufficient nutritional intake can impair wound healing and increase the risk of complications post burn. The overall aim of this thesis was to examine nutritional therapy post burn in relation to the extent of the burn. This was accomplished by examining adherence to nutritional guidelines (Study I), documented interventions and barriers (Study II), and symptoms affecting appetite and eating post injury (Study III-IV).

    Methods: Study I evaluated documented nutritional therapy in relation to guidelines during first 12 days post burn by conducting medical record review. Study II explored differences in documentation of nutritional interventions and barriers between patients post-minor and major burn by performing medical record review and content analysis. Study III modified questionnaires Disease Related Appetite Questionnaire (DRAQ) and Eating Symptom Questionnaire (ESQ) to measure nutrition impact symptoms (NIS) 6-12 months post burn by undertaken expert panel review, cognitive interviews and expert consultation on terminology. Study IV investigated the differences in prevalence of NIS using questionnaires DRAQ-burn and ESQ-burn.

    Results: Study I found low adherence to nutritional guidelines and low adequacy of intake compared to individual goals, particularly after minor burns. Study II showed that interventions targeting meal and meal support were rarely documented compared to medical nutritional therapy, despite most patients having oral intake. Barriers to nutritional therapy were common with fasting and gastrointestinal symptoms being the most frequently documented. Significantly more interventions and barriers were documented for patients post-major burn compared to post-minor burn. In Study III high expert consensus on the adapted questionnaires DRAQ-burn and ESQ-burn was achieved. Study IV revealed prevalences of median 1-2 NIS at 6 months that persisted up to 12 months post injury. There was no difference in the prevalence of NIS post-minor compared to post-major burn.

    Conclusions: The overall low adherence to nutritional guidelines, inadequate achievement of individual intake goals, the frequent documentation of barriers to nutritional interventions, and the persistent prevalence of nutrition impact symptoms indicate a risk of insufficient nutritional therapy following burn. The findings highlight the need for continuous nutritional assessment, evaluation and monitoring of nutritional therapy throughout the burn care trajectory regardless of burn extent. 

    List of papers
    1. Documented nutritional therapy in relation to nutritional guidelines post burn injury: a retrospective observational study
    Open this publication in new window or tab >>Documented nutritional therapy in relation to nutritional guidelines post burn injury: a retrospective observational study
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    2023 (English)In: Clinical Nutrition ESPEN, E-ISSN 2405-4577, Vol. 56, p. 222-229Article in journal (Refereed) Published
    Abstract [en]

    Background & aims: Intensive nutritional therapy is an essential component of burn care. Regardingpost-minor burn injuries, the literature is lacking. The aim of this study was to evaluate documentednutritional therapy in relation to international guidelines after both minor and major burn injuries. The secondary aim of this study was to evaluate the adequacy of energy and protein intake compared toindividual nutritional goals post-burn injury.

    Methods: A retrospective observational single-centre study including patients admitted between 2017and 2019 at a burn centre in Sweden was performed. The patients included in the study were >18 years old and in need of hospital care for > 72 h post-burn injury. Information about patients' demographics,nutritional therapy, and clinical characteristics of burn injury was collected. The patients were dividedaccording to total body surface area burnt (TBSA %) into minor burn injuries (TBSA <20%) and major burninjuries (TBSA >20%). Descriptive statistics were used to analyse data. Adherence to guidelines wasestablished by comparing 24 nutritional therapy recommendations to documented treatment. If documented nutritional treatment were in accordance with guidelines, adherence was considered high(>80%), moderate (60-79.9%) or low (<59.9%).

    Results: One hundred thirty-four patients were included, 90 patients with minor burn injuries and 44patients with major burn injuries. Documented adherence to the nutritional guideline was overall low.After minor burn injury, 8% (2/24) of nutritional therapy recommendations had a high adherence (fatintake <35% of total energy intake and enteral nutrition as prioritized feeding route), 17% (4/24) amoderate adherence, and 75% (18/24) a low adherence. In patients treated after a major burn injury,there were two recommendations with documented high adherence (Vitamin C and Zinc); 25% (6/24)had moderate adherence, and 67% (16/24) had low adherence. In addition, quite a large amount ofmissing data was found.Adequacy of documented nutritional intake, compared to the individual documented goal, was 78%(±23%) for energy and 66% (±22%) for protein after minor burn injury. After major burn injury, the adequacy was 89% (±21%) for energy and 78% (±19%) for protein, respectively.

    Conclusions: This study revealed low adherence to nutritional guidelines in patients treated for minorand major burn injuries. Compared to major burn injuries, lower documented adequacy for both energyand proteins was found in minor burn injuries. Given the disparity between guidelines and documentednutritional therapy, and the lack of specific guidelines for minor burn injuries, there could be aconsiderable risk of inadequate nutritional therapy post-burn injury.

    Place, publisher, year, edition, pages
    Elsevier, 2023
    National Category
    Anesthesiology and Intensive Care
    Research subject
    Nutrition
    Identifiers
    urn:nbn:se:uu:diva-508395 (URN)10.1016/j.clnesp.2023.06.003 (DOI)001027857900001 ()37344077 (PubMedID)
    Available from: 2023-07-31 Created: 2023-07-31 Last updated: 2026-01-14Bibliographically approved
    2. Nutritional interventions and barriers for patients early after burn injury: A retrospective evaluation of medical records
    Open this publication in new window or tab >>Nutritional interventions and barriers for patients early after burn injury: A retrospective evaluation of medical records
    2025 (English)In: Clinical Nutrition Open Science, E-ISSN 2667-2685, Vol. 62, p. 218-232Article in journal (Refereed) Published
    Abstract [en]

    Background & aims Inadequate intake and barriers to nutritional therapy are challenges in burn care. Post-burn injury nutritional care practices are rarely reported, particularly after minor injuries. The aim of this study was to describe nutritional interventions, identify barriers to nutritional intervention, and compare the documentation of nutrition for patients after minor and major burn injuries.

    Methods A retrospective single-centre medical record review was conducted on patients aged 18 and older who were admitted for more than 72 h between 2017 and 2019 at one of Sweden's two national burn centres. A content analysis and descriptive statistics were used to analyse the data, and differences were explored between patients with minor and major burn injuries.

    Results A total of 134 patients were included in the study: 90 patients had minor burn injuries (mean total burn surface area (TBSA) 8.1 % ± 5.0), and 44 patients had major burn injuries (mean TBSA 37.8 % ± 17.2). Nutritional supplement therapy (93 %) and nutrition prescription (91 %) were the most common interventions. Interventions targeting meals and snacks (43 %) and meal support (40 %), were documented less frequently. Fasting (93 %) and gastrointestinal symptoms (49 %) were the most common barriers.Significantly more interventions (including enteral/parenteral nutrition, and vitamin/mineral supplementation) and barriers (primarily related to enteral nutrition and fasting) were documented for patients with major burn injuries.

    Conclusion This study concludes that while most patients have oral intake, vitamin and mineral supplementation and medical nutritional therapy were more frequently documented than meal/snack interventions and meal support. The lack of dietary interventions, whether unperformed or undocumented, needs further investigation. Frequent documentation of barriers to nutritional interventions suggests that patients post-burn injury are at risk of inadequate energy and protein intake. Therefore, emphasising nutritional therapy and its documentation in post-burn care is crucial, regardless of burn severity.

    Place, publisher, year, edition, pages
    Elsevier, 2025
    National Category
    Surgery Nutrition and Dietetics Nursing
    Research subject
    Medical Science
    Identifiers
    urn:nbn:se:uu:diva-564219 (URN)10.1016/j.nutos.2025.06.007 (DOI)2-s2.0-105009607214 (Scopus ID)
    Available from: 2025-07-30 Created: 2025-07-30 Last updated: 2026-01-14Bibliographically approved
    3. Two Modified Questionnaires for the Assessment of Nutrition Impact Symptoms in the Rehabilitation Phase after Burn Injury: A Content Validation Study
    Open this publication in new window or tab >>Two Modified Questionnaires for the Assessment of Nutrition Impact Symptoms in the Rehabilitation Phase after Burn Injury: A Content Validation Study
    2022 (English)In: European Burn Journal, E-ISSN 2673-1991, Vol. 3, no 1, p. 156-164Article in journal (Refereed) Published
    Abstract [en]

    Disease Related Appetite Questionnaire (DRAQ) and Eating Symptom Questionnaire(ESQ) are used to assess nutrition impact symptoms, which are symptoms that can negatively affectthe patients’ food intake. However, these questionnaires have not yet been adapted to the needsof patients recovering from burn injuries. Our aim was therefore to develop DRAQ and ESQ forassessments of nutrition impact symptoms after burn injury. A content validation index (I-CVI) foritems included in DRAQ and ESQ, regarding their relevance for possible nutrition impact symptomsin a burn-injured patient (Likert scale 1–4), was performed by an expert review group. A clarityvalidation by expert and non-expert reviewers was carried out. Two of the eleven questions inDRAQ and eight of the fourteen questions in ESQ were not considered relevant and were thereforeremoved from the questionnaires. Five additional questions were added to DRAQ and two to ESQ.A high degree of consensus on relevance (scale-content validity index average, S-CVI/Ave, 0.86 forDRAQ-burn and 0.83 for ESQ-burn) was reached in the expert group. To conclude, it is suggestedthat we use developed forms of DRAQ and ESQ (DRAQ-burn and ESQ-burn) for the assessment ofnutrition impact symptoms, specifically during the rehabilitation phase of burn-injured patients.

    Place, publisher, year, edition, pages
    MDPI, 2022
    Keywords
    burn injury, surveys and questionnaires, questionnaire validation, nutrition impact symptoms
    National Category
    Nutrition and Dietetics
    Research subject
    Nutrition
    Identifiers
    urn:nbn:se:uu:diva-487255 (URN)10.3390/ebj3010013 (DOI)001126843100001 ()
    Funder
    Region Uppsala
    Available from: 2022-10-26 Created: 2022-10-26 Last updated: 2026-01-14Bibliographically approved
    4. Nutrition impact symptoms 6-12 months post-burn injury: a single-cohort longitudinal study
    Open this publication in new window or tab >>Nutrition impact symptoms 6-12 months post-burn injury: a single-cohort longitudinal study
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Objectives 

    This study aimed to investigate long-term prevalence of nutrition impact symptoms, such as appetite and eating-related issues that may impede food intake, in patients with minor- and major-burn injuries.

    Methods

    In this prospective longitudinal cohort study, sixty adults participated. Two questionnaires, the Disease-Related Appetite Questionnaire (DRAQ-burn) and the Eating Symptom Questionnaire (ESQ-burn), were completed during follow-up visits at six and 12 months post trauma.

    Results

    Median burn extent was 4.5% in the post-minor burn group and 24.0% in the post-major burn group. At six months, the median number of symptoms reported in DRAQ-burn was 2.0 for all patients; at 12 months, it was 1.0 post-minor burns and 1.5 post-major burns. Reported symptoms in the ESQ-burn remained stable at a median of 1.0 across both time points and burn severities. Most frequently reported symptoms included fluctuation in appetite/eating, never/rarely feeling hungry, tiredness affecting appetite/eating and nausea. No statistically significant differences were found between burn severity groups or over time.

    Conclusion

    Overall, although the nutrition impact symptoms were reported to be more mild than severe in nature, they persisted for up to a year post burn, highlighting the need for ongoing nutritional follow-up to mitigate the risk of malnutrition.

    Keywords
    Burn injury, Nutrition impact symptoms
    National Category
    Anesthesiology and Intensive Care Rehabilitation Medicine Nutrition and Dietetics
    Research subject
    Medical Science
    Identifiers
    urn:nbn:se:uu:diva-576047 (URN)
    Available from: 2026-01-14 Created: 2026-01-14 Last updated: 2026-01-21
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  • Public defence: 2026-03-06 13:15 Lecture Hall IV, Uppsala
    Skog, Rebecca
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, Caring Sciences.
    Internet-delivered interventions for sexual and reproductive health following cancer: The Fex-Can Young Adult project2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    This thesis is embedded within the Fex-Can Young Adult research project and consists of five papers. The overall aim was to develop and evaluate internet-delivered interventions targeting sexual problems and fertility-related distress following a cancer diagnosis, with the ultimate goal of improving the quality of survivorship among individuals diagnosed with cancer during young adulthood (18-39 years).

    Paper I reported findings from a randomized controlled trial evaluating the efficacy of the Fex-Can Sex program in alleviating sexual dysfunction 1.5 years following a cancer diagnosis during young adulthood. No significant effects of the program were demonstrated, and participant activity in the intervention was limited. 

    Paper II explored interactive activity and the content of discussions forum posts within the Fex-Can Sex and Fex-Can fertility programs. A limited proportion of participants met criteria for high level activity. Four themes were constructed through thematic analysis of the discussion forum posts: Fertility fears, Perceptions of the changed body, Missing out on life, and Importance of support and information

    Paper III presented the internal pilot trial and randomized controlled trial of the Fex-Can 2.0 intervention, which was designed to alleviate sexual problems and fertility-related distress among individuals diagnosed with cancer during young adulthood. 

    Paper IV presented the collaboration between patient research partners and researchers in the refinement and further development of the Fex-Can intervention. Using qualitative content analysis for analysis of multimodal data (impact log information, field notes, individual interviews), three main categories were constructed: Collaborative working process, Group atmosphere and Concrete impact

    Paper V investigated changes in perceptions of the body during the first five years following a cancer diagnosis in young adulthood. Over half of female and one-fourth of male participants reported body image disturbance at 1.5 years post-diagnosis, with significant improvements in body image observed over time among males and among females diagnosed with breast cancer or lymphoma. 

    The work presented in this thesis contributes to existing research by providing insight into the sexual and reproductive health of young adults diagnosed with cancer, and by informing future research aimed at refining and evaluating internet-delivered interventions. 

    List of papers
    1. Efficacy of a web-based psychoeducational intervention targeting young adults with sexual problems 1.5 years after cancer diagnosis—Results from a randomized controlled trial
    Open this publication in new window or tab >>Efficacy of a web-based psychoeducational intervention targeting young adults with sexual problems 1.5 years after cancer diagnosis—Results from a randomized controlled trial
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    2024 (English)In: Digital Health, E-ISSN 2055-2076, Vol. 10Article in journal (Refereed) Published
    Abstract [en]

    ObjectiveTo test the efficacy of a web-based psychoeducational intervention, Fex-Can Sex, in reducing sexual dysfunction in young adults with cancer.

    MethodsThis randomized controlled trial evaluated a 12-week web-based self-help intervention. Young adults aged 19–40 who reported sexual dysfunction 1.5 years after cancer diagnosis were drawn from a population-based cohort. Participants were randomized to an intervention group (IG, n = 72) or a control group (CG, n = 66) that solely received standard care. Primary outcome was assessed by a domain of the Patient Reported Outcome Measures Information Systems® SexFS: “Satisfaction with sex life.” Secondary outcomes included additional SexFS domains, body image (BIS), emotional distress (HADS), health-related quality of life (EORTC QLQ-C30), and self-efficacy related to sex. Surveys were completed at baseline, post-intervention, and three months later. Effects of the intervention were tested with t-tests, and linear mixed models (LMMs), including intention-to-treat and subgroup analyses. Additionally, the IG was asked about their experiences of the program with study-specific questions.

    ResultsThere were no differences in primary or secondary outcomes between the IG and the CG at post-intervention. Subgroup analyses showed that individuals with greater sexual problems at baseline improved over time, regardless of group allocation. Participants spent a mean time of 20.7 min on the program. The study-specific items showed that the majority of participants in the IG appreciated the program and would recommend it to others.

    ConclusionThe Fex-Can Sex intervention did not show effect on primary and secondary outcomes. Adherence to the intervention was low, and future interventions are recommended to include more interactive components to enhance usage.

    Clinical trial registrationThe trial was registered on 25 January, 2016 (trial number: 36621459).

    Place, publisher, year, edition, pages
    Thousand Oaks, California: Sage Publications, 2024
    Keywords
    young adults, psychoeducation, sexual dysfunction, web-based intervention, digital health, randomized controlled trial, cancer
    National Category
    Cancer and Oncology Nursing
    Identifiers
    urn:nbn:se:uu:diva-546213 (URN)10.1177/20552076241310037 (DOI)001383563500001 ()39741983 (PubMedID)2-s2.0-85213554831 (Scopus ID)
    Funder
    Swedish Research Council, 2017-01530Vårdal Foundation, 2014-0098Swedish Cancer Society, CAN 2013/886Forte, Swedish Research Council for Health, Working Life and Welfare, 2014-4689Swedish Research Council, 2022-00832Swedish Cancer Society, CAN 2016/615Swedish Cancer Society, 190196PjForte, Swedish Research Council for Health, Working Life and Welfare, 2019-00839
    Available from: 2025-01-07 Created: 2025-01-07 Last updated: 2026-01-18Bibliographically approved
    2. The role of a discussion forum within a web-based psychoeducational intervention focusing on sex and fertility: What do young adults communicate?
    Open this publication in new window or tab >>The role of a discussion forum within a web-based psychoeducational intervention focusing on sex and fertility: What do young adults communicate?
    2023 (English)In: Cancer Medicine, E-ISSN 2045-7634, Vol. 12, no 16, p. 17273-17283Article in journal (Refereed) Published
    Abstract [en]

    Objective: This study sought to investigate interactive participation and content of a moderated discussion forum within a web-based psychoeducational intervention aimed at alleviating sexual dysfunction and fertility distress in young adults diagnosed with cancer.

    Methods: The study is part of the Fex-Can Young Adult randomized controlled trial (RCT), in which young adults with self-reported sexual dysfunction or fertility distress were invited to participate. This study focuses on RCT participants that were randomized into the intervention condition. Sociodemographics and clinical characteristics of intervention participants and level of activity in the intervention were analyzed with descriptive statistics and compared between subgroups (“high” and “low” activity participants). Inductive qualitative thematic analysis was used to analyze the posts in the discussion forum.

    Results: Of 135 intervention participants, 24% met the criteria for high activity participation. There were no statistically significant differences found in terms of clinical and sociodemographic characteristics between high and low activity participants. Ninety-one participants (67%) accessed the discussion forum, and 19 (14%) posted at least once. Posters shared intimate details of their experiences of sexuality and fertility following cancer. The thematic analysis of posts resulted in four themes: fertility fears, perceptions of the changed body, missing out on life, and importance of support and information.

    Conclusions: While a smaller proportion of participants posted in the discussion forum, a majority spent time reading posts (lurkers). Participants posting in the forum shared experiences of intimate relationships, body image, parenthood concerns, and support needs. The discussion forum was used by a majority of intervention participants, and provided appreciated support for those who posted in the forum. We therefore recommend similar interventions to include this opportunity for interaction and communication.

    Place, publisher, year, edition, pages
    Wiley-Blackwell, 2023
    National Category
    Nursing
    Research subject
    Caring Sciences
    Identifiers
    urn:nbn:se:uu:diva-508387 (URN)10.1002/cam4.6317 (DOI)001022824000001 ()37401398 (PubMedID)
    Funder
    Swedish Cancer Society, 190196PjSwedish Cancer Society, CAN 2013/886Swedish Cancer Society, CAN 2016/615Forte, Swedish Research Council for Health, Working Life and Welfare, 2014‐4689Forte, Swedish Research Council for Health, Working Life and Welfare, 2019‐00839The Cancer Research Funds of Radiumhemmet, 161272Vårdal Foundation, 2014‐0098Swedish Research Council, 2017‐01530
    Available from: 2023-07-31 Created: 2023-07-31 Last updated: 2026-01-18Bibliographically approved
    3. An internet-delivered psychoeducational intervention (Fex-Can 2.0) targeting fertility-related distress and sexual dysfunction in young adults diagnosed with cancer: Study protocol of a randomized controlled trial with an internal pilot phase
    Open this publication in new window or tab >>An internet-delivered psychoeducational intervention (Fex-Can 2.0) targeting fertility-related distress and sexual dysfunction in young adults diagnosed with cancer: Study protocol of a randomized controlled trial with an internal pilot phase
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    2025 (English)In: PLOS ONE, E-ISSN 1932-6203, Vol. 20, no 4, article id e0322368Article in journal (Refereed) Published
    Abstract [en]

    Background

    While previous literature has continuously demonstrated the negative effects of cancer and its treatment on fertility and sexuality, evidence-based interventions to alleviate fertility-related distress and sexual dysfunction are lacking. This study protocol describes the internal pilot study and randomized controlled trial of an internet-delivered psychoeducational intervention: Fex-Can 2.0. The primary objective is to determine efficacy of Fex-Can 2.0 in terms of reduction of fertility-related distress and sexual dysfunction at end of the 12-week intervention. The internal pilot study will assess feasibility of the study, determined according to pre-specified progression criteria and individual interviews.

    Methods

    The study has a randomized controlled design, with an internal pilot phase. The intervention group will receive Fex-Can 2.0, consisting of psychoeducational- and behavior change content. The control group will be allocated to standard care. Primary outcomes are fertility-related distress (RCAC) and sexual function and satisfaction (PROMIS SexFS Brief Sexual Profile). Secondary outcomes include body image (BIS), emotional distress (HADS), health-related quality of life (EORTC QLQ-C30), need satisfaction and frustration scale (NSFS), fertility- and sex-related knowledge, and self-efficacy related to fertility and sex life. Outcomes will be assessed at baseline, directly after the intervention, and 12 weeks later. During the internal pilot, data on trial recruitment, data collection, drop out, and adherence will be collected to assess feasibility. Semi-structured interviews will be conducted to further assess acceptability of Fex-Can 2.0.

    Conclusions

    This randomized controlled trial aims to evaluate whether Fex-Can 2.0 is superior to standard care, in terms of reducing fertility-related distress and sexual dysfunction in young adults diagnosed with cancer. If proven efficacious, the Fex-Can 2.0 intervention may be a valuable resource in health care, with the potential to significantly improve the care of young adults experiencing fertility-related distress and/or sexual dysfunction following cancer.

    Trial registration

    ClinicalTrials.gov ISRCTN18040643

    Place, publisher, year, edition, pages
    Public Library of Science (PLoS), 2025
    National Category
    Cancer and Oncology
    Identifiers
    urn:nbn:se:uu:diva-557408 (URN)10.1371/journal.pone.0322368 (DOI)001488708100037 ()40300010 (PubMedID)2-s2.0-105003974066 (Scopus ID)
    Funder
    Swedish Research Council, 2022-00832The Cancer Research Funds of Radiumhemmet, 161272Swedish Cancer Society, 222311PjForte, Swedish Research Council for Health, Working Life and Welfare, 2019-00838
    Available from: 2025-05-27 Created: 2025-05-27 Last updated: 2026-01-18Bibliographically approved
    4. Navigating long-term co-creative research with young adults diagnosed with cancer: a qualitative study
    Open this publication in new window or tab >>Navigating long-term co-creative research with young adults diagnosed with cancer: a qualitative study
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Cancer and Oncology Nursing
    Identifiers
    urn:nbn:se:uu:diva-573159 (URN)
    Available from: 2026-01-12 Created: 2026-01-12 Last updated: 2026-01-18
    5. Body image during the first 5 years following a cancer diagnosis in young adulthood – results from a longitudinal population-based study
    Open this publication in new window or tab >>Body image during the first 5 years following a cancer diagnosis in young adulthood – results from a longitudinal population-based study
    (English)Manuscript (preprint) (Other academic)
    National Category
    Cancer and Oncology Nursing
    Identifiers
    urn:nbn:se:uu:diva-572453 (URN)
    Available from: 2025-12-02 Created: 2025-12-02 Last updated: 2026-01-18
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  • Public defence: 2026-03-06 13:15 BMC A1:111, Uppsala
    Bjärterot, Patrik
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.
    Development and Application of Computational Methods in Mass Spectrometry Imaging2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Mass spectrometry imaging (MSI) is an emerging technique for spatially resolving the molecular composition of biological samples. MSI frequently relies on matrix-assisted laser desorption/ionization (MALDI), in which a pulsed laser beam and chemical matrices are used to facilitate desorption/ionization of molecular species from the sample surface. MALDI matrices can be divided into two broad groups: conventional matrices that promote ionization by protonation/deprotonation or cationization, and derivatizing matrices that target specific chemical functionalities. Derivatizing matrices such as FMP-10 are charged molecules that react with specific chemical structures on target analytes to form covalent matrix-analyte conjugates, enhancing ionization and detectability but limiting chemical coverage. Derivatizing matrices may also create multiple derivatization products through serial reactions with single analytes, complicating annotation. This prompted development of Met-ID, a software tool for automatic annotation of MSI data with an emphasis on derivatization-based workflows. Met-ID incorporates matrix-specific chemistry to enumerate plausible derivative products and filter chemically implausible annotations. It includes a database of in-house acquired tandem mass spectrometry (MS2) spectra of FMP-10-derivatized chemical standards to support MS2 spectral matching. The use of ion mobility (IM) spectrometry in MSI enables collision cross section (CCS) values to be used for annotation. This motivated the development of CCSSim, an in-silico CCS prediction method implemented in Met-ID together with a mixture-model framework to increase annotation confidence by integrating m/z and CCS data. To improve spatial correlations between mass spectrometric and transcriptomic data, a method was developed to enable sequential MSI and spatially resolved transcriptomics (SRT) analysis of one tissue section rather than using consecutive sections. This spatial multimodal analysis can be performed on non-conductive Visium slides without appreciable degradation of MSI metabolite signal or SRT RNA signal. Finally, MALDI-MSI was evaluated as a sample-efficient approach for distinguishing de novo Parkinson’s disease patients from controls using limited patient material and minimal sample preparation, reducing analytical time compared to more sample-intensive workflows. In conclusion, this thesis introduces new high-throughput computational methods for automated metabolite annotation in tissue sections, demonstrates the compatibility of MALDI-MSI with SRT, and highlights the versatility of MSI for analyzing sample-limited clinical biofluids.

    List of papers
    1. Met-ID: An Open-Source Software for Comprehensive Annotation of Multiple On-Tissue Chemical Modifications in MALDI-MSI
    Open this publication in new window or tab >>Met-ID: An Open-Source Software for Comprehensive Annotation of Multiple On-Tissue Chemical Modifications in MALDI-MSI
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    2025 (English)In: Analytical Chemistry, ISSN 0003-2700, E-ISSN 1520-6882, Vol. 97, no 16, p. 9033-9041Article in journal (Refereed) Published
    Abstract [en]

    Here, we introduce Met-ID, a graphical user interface software designed to efficiently identify metabolites from MALDI-MSI data sets. Met-ID enables annotation of m/z features from any type of MALDI-MSI experiment, involving either derivatizing or conventional matrices. It utilizes structural information for derivatizing matrices to generate a subset of targets that contain only functional groups specific to the derivatization agent. The software is able to identify multiple derivatization sites on the same molecule, facilitating identification of the derivatized compound. This ability is exemplified by FMP-10, a reactive matrix that assists the covalent charge-tagging of molecules containing phenolic hydroxyl and/or primary or secondary amine groups. Met-ID also permits users to recalibrate data with known m/z ratios, boosting confidence in mass match results. Furthermore, Met-ID includes a database featuring MS2 spectra of numerous chemical standards, consisting of neurotransmitters and metabolites derivatized with FMP-10, alongside peaks for FMP-10 itself, all accessible directly through the software. The MS2 spectral database supports user-uploaded spectra and enables comparison of these spectra with user-provided tissue MS2 spectra for similarity assessment. Although initially installed with basic data, Met-ID is designed to be customizable, encouraging users to tailor the software to their specific needs. While several MSI-oriented software solutions exist, Met-ID combines both MS1 and MS2 functionalities. Developed in alignment with the FAIR Guiding Principles for scientific software, Met-ID is freely available as an open-source tool on GitHub, ensuring wide accessibility and collaboration.

    Place, publisher, year, edition, pages
    American Chemical Society (ACS), 2025
    National Category
    Software Engineering
    Identifiers
    urn:nbn:se:uu:diva-557029 (URN)10.1021/acs.analchem.5c00633 (DOI)001471685200001 ()40253716 (PubMedID)2-s2.0-105004009400 (Scopus ID)
    Funder
    Swedish Research Council, 2022-04198Swedish Research Council, 2021-03293The Swedish Brain Foundation, FO2023-024Science for Life Laboratory, SciLifeLab
    Available from: 2025-05-22 Created: 2025-05-22 Last updated: 2026-01-15Bibliographically approved
    2. Met-ID 2.0: High Confidence Annotation with Collision Cross Section Predictions
    Open this publication in new window or tab >>Met-ID 2.0: High Confidence Annotation with Collision Cross Section Predictions
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Bioinformatics (Computational Biology) Analytical Chemistry
    Identifiers
    urn:nbn:se:uu:diva-575589 (URN)
    Available from: 2026-01-12 Created: 2026-01-12 Last updated: 2026-01-15
    3. Spatial multimodal analysis of transcriptomes and metabolomes in tissues
    Open this publication in new window or tab >>Spatial multimodal analysis of transcriptomes and metabolomes in tissues
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    2024 (English)In: Nature Biotechnology, ISSN 1087-0156, E-ISSN 1546-1696, Vol. 42, no 7, p. 1046-1050Article in journal (Refereed) Published
    Abstract [en]

    We present a spatial omics approach that combines histology, mass spectrometry imaging and spatial transcriptomics to facilitate precise measurements of mRNA transcripts and low-molecular-weight metabolites across tissue regions. The workflow is compatible with commercially available Visium glass slides. We demonstrate the potential of our method using mouse and human brain samples in the context of dopamine and Parkinson's disease. Metabolites and RNA in a tissue section are profiled simultaneously.

    Place, publisher, year, edition, pages
    Springer Nature, 2024
    National Category
    Biochemistry Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-542161 (URN)10.1038/s41587-023-01937-y (DOI)001118956800001 ()37667091 (PubMedID)
    Funder
    Knut and Alice Wallenberg Foundation, KAW 2018.172Swedish Foundation for Strategic ResearchScience for Life Laboratory, SciLifeLabSwedish Research Council, 2022-03984Swedish Research Council, 2020-06182EU, Horizon 2020Swedish Research Council, 2021-03293The Swedish Brain Foundation, FO2021-0318
    Available from: 2024-11-08 Created: 2024-11-08 Last updated: 2026-01-15Bibliographically approved
    4. Rapid Metabolic Profiling of 1 ÎŒL Crude Cerebrospinal Fluid by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Can Differentiate De Novo Parkinson's Disease
    Open this publication in new window or tab >>Rapid Metabolic Profiling of 1 ÎŒL Crude Cerebrospinal Fluid by Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry Imaging Can Differentiate De Novo Parkinson's Disease
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    2023 (English)In: Analytical Chemistry, ISSN 0003-2700, E-ISSN 1520-6882, Vol. 95, no 50, p. 18352-18360Article in journal (Refereed) Published
    Abstract [en]

    Parkinson's disease (PD) is a highly prevalent neurodegenerative disorder affecting the motor system. However, the correct diagnosis of PD and atypical parkinsonism may be difficult with high clinical uncertainty. There is an urgent need to identify reliable biomarkers using high-throughput, molecular-specific methods to improve current diagnostics. Here, we present a matrix-assisted laser desorption/ionization mass spectrometry imaging method that requires minimal sample preparation and only 1 mu L of crude cerebrospinal fluid (CSF). The method enables analysis of hundreds of samples in a single experiment while simultaneously detecting numerous metabolites with subppm mass accuracy. To test the method, we analyzed CSF samples from 12 de novo PD patients (that is, newly diagnosed and previously untreated) and 12 age-matched controls. Within the identified molecules, we found neurotransmitters and their metabolites such as gamma-aminobutyric acid, 3-methoxytyramine, homovanillic acid, serotonin, histamine, amino acids, and metabolic intermediates. Limits of detection were estimated for multiple neurotransmitters with high linearity (R-2 > 0.99) and sensitivity (as low as 16 pg/mu L). Application of multivariate classification led to a highly significant (P < 0.001) model of PD prediction with a 100% classification rate, which was further thoroughly validated with a permutation test and univariate analysis. Molecules related to the neuromelanin pathway were found to be significantly increased in the PD group, indicated by their elevated relative intensities compared to the control group. Our method enables rapid detection of PD-related biomarkers in low sample volumes and could serve as a valuable tool in the development of robust PD diagnostics.

    Place, publisher, year, edition, pages
    American Chemical Society (ACS), 2023
    National Category
    Neurosciences Biochemistry Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-520383 (URN)10.1021/acs.analchem.3c02900 (DOI)001127979900001 ()38059473 (PubMedID)
    Funder
    Swedish Research Council
    Available from: 2024-01-12 Created: 2024-01-12 Last updated: 2026-01-15Bibliographically approved
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  • Public defence: 2026-03-17 09:15 Sal XI, Universitetshuset, Uppsala
    Ilievski, Filip
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Molecular Systems Biology.
    Fluorescence labelling in re-coded E. coli with non-canonical chemical entities: Single-codon labelling for single-molecule tracking2026Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Single-molecule tracking (SMT) enables direct observation of molecular dynamics in living cells, revealing heterogeneity hidden by in vitro ensemble measurements. However, current protein labeling strategies using self-labeling tags such as HaloTag (~33 kDa) or SNAPtag (~20 kDa) can interfere with the function of proteins that undergo large conformational changes or participate in tightly orchestrated multi-factor complexes. This thesis develops and applies FLORENCE (Fluorescence Labelling in Re-coded E. coli with Non-canonical Chemical Entities), a genetic code expansion (GCE) technology that enables site-specific protein labeling with single-codon resolution for SMT of bacterial elongation factors.

    Conventional labeling with bulky tags can prevent functional ribosome binding of translation factors. To address this, in Paper I, we systematically optimized a complete GCE system in genomically re-coded E. coli (GRE) strains where all 321 UAG stop codons have been converted to UAA and release factor 1 deleted. We evaluated pyrrolysyl-tRNA synthetase variants (PylRS1–3), characterized six GRE strains for growth rate and morphology, and optimized a single-plasmid vector architecture combining the orthogonal translation system with the target gene. Using strain-promoted azide-alkyne cycloaddition (SPAAC) between BCNcontaining non-canonical amino acids and JF646-azide dye, we achieved complete labeling within 30 minutes in live cells. Validation with dual-labeled HaloTag and LacY reporters demonstrated that FLORENCE yields SMT results comparable to conventional HaloTag labeling.

    In Paper II we applied FLORENCE to study elongation factor G (EF-G), an essential for ribosomal translocation. HaloTag fusions at both termini showed that bulky tags abolish EF-G function in vivo. In contrast, FLORENCE labeling at position 301 (301UAG) revealed 30–45% slow-state occupancy consistent with ribosome binding, as confirmed by tracking the catalytically inactive H92A mutant.

    To improve GRE fitness for physiological studies, Paper III reports a novel GRE*, with superior growth compared to the parental GRE6. Single-cell microfluidic analysis confirmed wild-type-like phenotype, and whole genome sequencing revealed deletion of the ratA translation initiation toxin. FLORENCE-labelled EF-G and EF-Tu were tracked at 1 ms temporal resolution, with catalytically inactive mutants showing an increase in ribosome-bound states. Still, as in Paper III, optimization of the expression level of these factors remains critical.

    In summary, this thesis establishes FLORENCE as a user-friendly experimental platform for SMT investigation of translation factors and other challenging targets in living bacterial cells.

    List of papers
    1. Optimization of the genetic code expansion technology for intracellular labelling and single-molecule tracking of proteins in genomically re-coded E. coli
    Open this publication in new window or tab >>Optimization of the genetic code expansion technology for intracellular labelling and single-molecule tracking of proteins in genomically re-coded E. coli
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    2026 (English)In: RSC Chemical Biology, E-ISSN 2633-0679Article in journal (Refereed) Published
    National Category
    Natural Sciences
    Research subject
    Biochemistry
    Identifiers
    urn:nbn:se:uu:diva-573024 (URN)10.1039/d5cb00221d (DOI)
    Funder
    EU, European Research Council, 947747-SMACKSwedish Research Council, 2019-03714Swedish Research Council, 2023-03383
    Available from: 2025-12-09 Created: 2025-12-09 Last updated: 2026-01-28
    2. Single-molecule tracking of Elongation factor G in re-coded E. coli
    Open this publication in new window or tab >>Single-molecule tracking of Elongation factor G in re-coded E. coli
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Protein synthesis is one of the central processes of life. With recent single-molecule tracking techniques, detailed information about protein synthesis dynamics has been extracted from living cells. Still, there are conflicting results and very little knowledge about the dynamic behaviour of elongation factors because of the lack of fluorescent labels that preserve their native function. In the present study, we combine single-molecule tracking with the genetic code expansion (GCE) technology to directly observe ribosome binding dynamics of translation elongation factor EF-G in growing E. coli cells. We show that EF-G cannot be functionally labelled with the commonly used HaloTag. Instead, we utilize bio-orthogonal click-chemistry to fluorescently label EF-G in an optimized re-coded E. coli. This system reports the first estimation of the ribosome-binding time of EF-G in vivo, contributing to measuring the kinetics of elongation under physiological conditions. These findings open a technological avenue for difficult-to-label molecules inside living cells.

    Keywords
    Translation elongation, genetic code expansion, single-molecule tracking, protein synthesis
    National Category
    Biophysics
    Research subject
    Biology with specialization in Microbiology
    Identifiers
    urn:nbn:se:uu:diva-577767 (URN)
    Projects
    European Research Council (947747-SMACK)Swedish Research Council (2019-03714, 2023-03383)
    Funder
    EU, European Research Council, 947747-SMACK
    Available from: 2026-01-28 Created: 2026-01-28 Last updated: 2026-01-30
    3. Adaptive lab evolution of a fully re-coded E.coli for single-molecule tracking
    Open this publication in new window or tab >>Adaptive lab evolution of a fully re-coded E.coli for single-molecule tracking
    (English)Manuscript (preprint) (Other academic)
    Abstract [en]

    Genomically recoded Escherichia coli (GRE) strains represent a valuable tool as model organisms for single-molecule tracking via click-labelling. These strains are constantly being engineered to incorporate non-canonical amino acids, enabling expanded chemical functionality. However, extensive genome-scale recoding frequently reduces their fitness and imposes metabolic re-wiring limiting the utility of GREs as practical model organisms for live-cell imaging in vivo. This study reports that previously optimized GRE6 was subjected to adaptive laboratory evolution (ALE) in an imaging-rich defined media (RDM) to recover fitness. The evolved strain displayed improved growth relative to the ancestral GRE6, and a wild-type-like growth was confirmed by single-cell analysis. Whole-genome sequencing revealed deletion of the initiation inhibitor ratA. ncAA incorporation was comparable or slightly improved relative to the common MG1655 strain. These results point out the importance of applying ALE in parallel to rational genome engineering in expanding the benefits of genomically re-coded organisms. Moreover, they point out the necessity for the development of improved vectors for essential translation factors for SMT.

    Keywords
    Adaptive lab evolution, single-molecule tracking, genomically re-coded organisms
    National Category
    Cell Biology
    Research subject
    Molecular Life Sciences
    Identifiers
    urn:nbn:se:uu:diva-577809 (URN)
    Available from: 2026-01-28 Created: 2026-01-28 Last updated: 2026-01-28
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