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  • Disputation: 2026-04-24 09:00 Hörsal 2 (Ekonomikum), Uppsala
    Camelo, Pedro
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Samhällsvetenskapliga fakulteten, Institutionen för informatik och media.
    The Discursive Construction of the Brazilian Far Right: Media Discourses, (Accounts of) Journalistic Practice and Normalisation2026Doktorsavhandling, monografi (Övrigt vetenskapligt)
    Abstract [en]

    This study presents a critical discourse analysis of the discursive construction of the far right in Brazil. It examines the relationship between Brazilian media and contemporary politics in light of the recent emergence of radical right-wing movements and leaders in the country, epitomised in particular by the former Brazilian president Jair Bolsonaro.

    First, a literature review (Chapter 2) introduces key concepts relevant to the study, particularly in relation to contemporary dynamics in politics, media and journalism. A discourse-centred theoretical framework (Chapter 3) then outlines the main analytical categories underpinning this research. Next, a contextual background chapter (Chapter 4) sheds light on both historical and contemporary issues shaping the relationship between Brazilian politics and the media. The methodological chapter (Chapter 5) presents the research design, situating the study within the broader tradition of Critical Discourse Analysis (CDA), and specifically its Discourse-Historical Approach (DHA), before outlining the analytical categories and data subjected to empirical investigation.

    The subsequent three empirical chapters summarise the findings of a critical discourse analysis of Brazilian news media texts published between 2011 and 2018 (Chapter 6) and between 2018 and 2024 (Chapter 7), as well as interviews conducted with Brazilian journalists covering the country’s political affairs (Chapter 8). The concluding chapter (Chapter 9) summarises the main findings of the research, reflects on its limitations and outlines potential paths forward.

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  • Disputation: 2026-04-24 09:15 Rosénsalen, Uppsala
    Gidén, Karin
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för kvinnors och barns hälsa, Obstetrisk och reproduktiv hälsoforskning.
    Beyond the early weeks: Remission and persistence of postpartum depressive symptoms2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Peripartum depression is a common complication in the perinatal period, affecting approximately 17% of women worldwide. Many women (30–50%) continue experiencing long-term symptoms. The aim of this thesis was to investigate the course of postpartum depressive symptoms measured with the Edinburgh Postnatal Depression Scale (EPDS), the treatment provided following positive screening, and factors associated with remission or persistence of symptoms at six months postpartum.

    Paper I (n = 593) was a descriptive nested cohort study examining identification, interventions received, and remission status at six months postpartum among women scoring ≥12 on the EPDS. Approximately 59% of women with depressive symptoms were not identified by the healthcare system. Among those identified, around 90% received some form of intervention, and symptom reduction was greatest in this group. Remission rates at six months postpartum were 30–50% depending on identification.

    Paper II (n = 654) was a prediction model study including women with early postpartum depressive symptoms (EPDS ≥12) from a large longitudinal cohort. Cohort data and medical record information were analyzed to develop a model identifying women at risk of persistent depressive symptoms at six months postpartum. The model demonstrated high specificity (92%) and moderate sensitivity (48%) at an EPDS cut-off of 11/12 at six months postpartum. The area under the curve was 0.73, indicating acceptable discriminative ability.

    Paper III (n = 206) was an external validation study of the prediction model in an independent longitudinal cohort. Predictive performance was slightly lower but remained acceptable, maintaining high specificity and strong reliability in positive classifications.

    Paper IV (n = 18) was a qualitative descriptive interview study exploring perceived barriers and facilitators linked to remission. Five themes were identified: (1) Others take responsibility; (2) Practical support; (3) Emotional validation; (4) Thresholds; and (5) Struggling to prioritize oneself.

    In conclusion, many women with postpartum depressive symptoms remain undetected. However, when identified, most receive treatment in Sweden today. This thesis presents a clinically applicable prediction model for identifying women at risk of persistent symptoms and demonstrates that recovery depends not only on effective treatment, but also on social, relational, and structural factors influencing access to support and remission.

    Delarbeten
    1. Feeling better? - Identification, interventions, and remission among women with early postpartum depressive symptoms in Sweden: a nested cohort study
    Öppna denna publikation i ny flik eller fönster >>Feeling better? - Identification, interventions, and remission among women with early postpartum depressive symptoms in Sweden: a nested cohort study
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    2024 (Engelska)Ingår i: European psychiatry, ISSN 0924-9338, E-ISSN 1778-3585, Vol. 67, nr 1, artikel-id e14Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background

    Postpartum depression affects around 12% of mothers in developed countries, with consequences for the whole family. Many women with depressive symptoms remain undetected and untreated. The aim of this study was to investigate to what extent women with depressive symptoms at 6 weeks postpartum are identified by the healthcare system, the interventions they received, and remission rates at 6 months postpartum.

    Methods

    Postpartum women scoring 12–30 on the Edinburgh Postnatal Depression Scale (EPDS) at 6 weeks after delivery (n = 697) were identified from the longitudinal cohort study “Biology, Affect, Stress, Imaging and Cognition” (BASIC) in Uppsala, Sweden. A total of 593 women were included. Background and remission information at 6 months was collected from the BASIC dataset. Medical records were examined to identify interventions received.

    Results

    Most women (n = 349, 58.7%) were not identified by the healthcare system as having depressive symptoms and 89% lacked any record of interventions. Remission rates at 6 months postpartum were 69% in this group. Among women identified by the healthcare system, 90% received interventions and about 50% were in remission at 6 months postpartum. The EPDS reduction during the study period was largest in the group identified by the child health services (CHS, −5.15) compared to the non-identified (−4.24, p < 0.001).

    Conclusions

    Despite screening guidelines, many women with depressive symptoms had no documentation of screening or interventions by the healthcare system. Furthermore, a significant proportion did not achieve remission despite interventions. Being identified by CHS was associated with the largest reduction of symptoms. Research is needed to understand gaps in the healthcare processes, to better identify peripartum depression.

    Ort, förlag, år, upplaga, sidor
    Cambridge University Press, 2024
    Nyckelord
    EPDS, interventions, peripartum depression, postpartum depression, pregnancy, remission rates
    Nationell ämneskategori
    Gynekologi, obstetrik och reproduktionsmedicin Psykiatri
    Identifikatorer
    urn:nbn:se:uu:diva-526194 (URN)10.1192/j.eurpsy.2024.6 (DOI)001174210200001 ()38254262 (PubMedID)
    Forskningsfinansiär
    Vetenskapsrådet, 523-2014-2342Vetenskapsrådet, 523-2014-07605Marianne och Marcus Wallenbergs Stiftelse, 2011.0115Svenska läkaresällskapet, SLS-250581
    Tillgänglig från: 2024-04-05 Skapad: 2024-04-05 Senast uppdaterad: 2026-03-05Bibliografiskt granskad
    2. Remission or Persistence?: A Prediction Tool to Identify Women at Risk for Long-Term Depressive Symptoms Postpartum
    Öppna denna publikation i ny flik eller fönster >>Remission or Persistence?: A Prediction Tool to Identify Women at Risk for Long-Term Depressive Symptoms Postpartum
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    2024 (Engelska)Ingår i: Depression and anxiety (Print), ISSN 1091-4269, E-ISSN 1520-6394, Vol. 2024, artikel-id 7734542Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background. Peripartum depression is a common complication with potential long-term adverse effects on the woman and her family. Approximately 30%-50% of newly delivered women experience prolonged depressive symptoms at 6-12 months postpartum. Early detection may facilitate preventive and treatment interventions. Aim. To investigate correlates for and create a tool for predicting long-term symptomatology in women experiencing depressive symptoms at 6 weeks postpartum.

    Materials and Methods. Data from the Biology, Affect, Stress, Imaging, and Cognition study was used, to identify women who scored high (>= 12) on the Edinburgh Postnatal Depression Scale (EPDS) at 6 weeks postpartum (n = 697). Further, we collected data from medical records and included 40 variables based on earlier studies and clinical experience. A total of 654 women were included. Elastic net linear regression analysis was performed to identify predictors of continued symptoms at 6 months postpartum. An equation predicting the EPDS score at 6 months postpartum based on weighted variables was developed.

    Results. High education level and sleep for more than 6 hr per night in pregnancy week 17 were protective factors. Parity, pregnancy complications, stressful events, attention deficit hyperactivity disorder/attention deficit disorder, history of depression, depressive symptoms, and anxiety during pregnancy were predictive factors of prolonged depressive symptoms. A prediction tool with area under curve 0.73 and positive predictive value of 79%-83% depending on chosen EPDS cutoff was developed for clinical use.

    Conclusions. Our prediction tool offers a method to identify women at risk for persisting depressive symptoms postnatally, based on their significant depressive symptoms during the first weeks after delivery. Screening in order to identify these women can already start in the antenatal setting.

    Ort, förlag, år, upplaga, sidor
    John Wiley & Sons, 2024
    Nationell ämneskategori
    Gynekologi, obstetrik och reproduktionsmedicin Psykiatri
    Identifikatorer
    urn:nbn:se:uu:diva-538835 (URN)10.1155/2024/7734542 (DOI)001307178800001 ()
    Forskningsfinansiär
    Vetenskapsrådet, 2023-01928Vetenskapsrådet, 523-2014-2342Vetenskapsrådet, 523-2014-07605Marianne och Marcus Wallenbergs Stiftelse, MMW2011.0115Svenska läkaresällskapet, SLS-250581
    Tillgänglig från: 2024-09-20 Skapad: 2024-09-20 Senast uppdaterad: 2026-03-05Bibliografiskt granskad
    3. External validation of a prediction tool to identify women with high risk of long-term postpartum depressive symptoms
    Öppna denna publikation i ny flik eller fönster >>External validation of a prediction tool to identify women with high risk of long-term postpartum depressive symptoms
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Gynekologi, obstetrik och reproduktionsmedicin
    Identifikatorer
    urn:nbn:se:uu:diva-581016 (URN)
    Tillgänglig från: 2026-03-02 Skapad: 2026-03-02 Senast uppdaterad: 2026-03-05
    4. What I (would have) needed - Mothers' views on determinants of postpartum depressive symptom remission
    Öppna denna publikation i ny flik eller fönster >>What I (would have) needed - Mothers' views on determinants of postpartum depressive symptom remission
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    2026 (Engelska)Ingår i: Journal of Affective Disorders, ISSN 0165-0327, E-ISSN 1573-2517, Vol. 401, artikel-id 121271Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background: Postpartum depression (PPD) is a common peripartum complication with approximately 13-17% of women being affected. About 30-50% continue to have symptoms 12 months postpartum. Earlier studies have examined women's experiences of treatments to evaluate their effectiveness in supporting women's recovery from PPD. Studies implementing a broader qualitative research focus-exploring factors associated with both personal circumstances and the health care system, and their perceived contribution to remission-are currently lacking.

    Aim: To identify the factors women with short- and long-term PPD symptoms view as most important for faster remission.

    Method: Participants from a Swedish cohort study (Mom2B) with depressive symptoms above the clinical cut-off of 11 on the Edinburg Postnatal Depression Scale early postpartum, were invited to participate in an interview study. Semi-structure interviews were performed online (n = 12) or via telephone (n = 6). The interviews were transcribed and analyzed using Systematic Text Condensation.

    Results: Five themes describing factors of importance for recovery from PPD were identified; 1) Others take responsibility; 2) Practical support; 3) Emotional validation; 4) Thresholds and 5) Struggling to prioritize oneself.

    Conclusion: Synthesized from the resulting themes, a five-stage recovery process was identified: realization of symptoms, acceptance, recognizing the need for help, knowledge, and receiving help. This study highlights the key factors in PPD recovery from the perspective of affected women, providing insights to inform and improve postpartum care. The results can help staff visualize the process, which makes them better equipped to support the women effectively.

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2026
    Nyckelord
    Postpartum depression, Peripartum depression, Qualitative research, Remission, Recovery, Stages, Process
    Nationell ämneskategori
    Gynekologi, obstetrik och reproduktionsmedicin Omvårdnad Psykiatri
    Identifikatorer
    urn:nbn:se:uu:diva-579206 (URN)10.1016/j.jad.2026.121271 (DOI)001679632400001 ()41605344 (PubMedID)2-s2.0-105028494017 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 2020-01965Vetenskapsrådet, 2024-03199Vetenskapsrådet, 2023-01928Hjärnfonden, FO2022-0098
    Tillgänglig från: 2026-02-16 Skapad: 2026-02-16 Senast uppdaterad: 2026-03-05Bibliografiskt granskad
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  • Disputation: 2026-04-24 09:15 Polhemsalen, Uppsala
    Rosichini, Andrea
    Uppsala universitet, Teknisk-naturvetenskapliga vetenskapsområdet, Kemiska sektionen, Institutionen för kemi - Ångström, Fysikalisk kemi.
    A Dance of Electrons and Protons: Mechanistic investigation into excited state and proton-coupled electronic processes2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The movement of electrons is at the core of every chemical process, and is often accompanied by the movement of protons. The aim of this thesis is to shine light on the mechanism of some of these chemical processes by, well, shining light on them. Light is a powerful tool to trigger and investigate chemical reactions. Absorption of light, in particular visible light, by molecules brings them in excited, more reactive states. The different reactivity of excited states compared to their ground state counterparts is an interesting subject of study in itself, but can also be used to trigger ground state reactions in a controlled way, allowing researchers to study the time evolution of these reactions. In this thesis, both excited state reactions and photo-triggered reactions are discussed, and studied using steady-state and time resolved spectroscopic methods.

    Paper I and Paper II examine the unexpected behaviour of Proton-Coupled Electron Transfer reactions from tryptophan in water when pH is varied. This behaviour has been observed for the first time almost two decades ago, and led to a series of studies aimed at identifying the source of it. However, to this day an explanation has not been found. In Paper I and Paper II, some existing hypotheses were disproven, and the source of the pH dependent behaviour was narrowed down to the role of the amine and carboxylic acid group of the amino acid. Paper III demonstrates the second known case of Proton-Coupled Energy Transfer, a recently discovered excited state proton-coupled reaction, investigates its mechanism and proposes rational design principles for new systems capable of undergoing Proton-Coupled Energy Transfer. Finally, Paper IV investigates Triplet-Triplet annihilation from benzo[ghi]perylene, adding a new element to the interesting and complex photophysics of this polycyclic aromatic hydrocarbon.

    In this thesis, the results and conclusions from the four Papers above are rediscussed and framed in the context of their relevance in progressing fundamental scientific understanding.

    Delarbeten
    1. Concerted and Stepwise Proton-Coupled Electron Transfer for Tryptophan-Derivative Oxidation with Water as the Primary Proton Acceptor: Clarifying a Controversy
    Öppna denna publikation i ny flik eller fönster >>Concerted and Stepwise Proton-Coupled Electron Transfer for Tryptophan-Derivative Oxidation with Water as the Primary Proton Acceptor: Clarifying a Controversy
    2022 (Engelska)Ingår i: Journal of the American Chemical Society, ISSN 0002-7863, E-ISSN 1520-5126, Vol. 144, nr 16, s. 7308-7319Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Concerted electron-proton transfer (CEPT) reactions avoid charged intermediates and may be energetically favorable for redox and radical-transfer reactions in natural and synthetic systems. Tryptophan (W) often partakes in radical-transfer chains in nature but has been proposed to only undergo sequential electron transfer followed by proton transfer when water is the primary proton acceptor. Nevertheless, our group has shown that oxidation of freely solvated tyrosine and W often exhibit weakly pH-dependent proton-coupled electron transfer (PCET) rate constants with moderate kinetic isotope effects (KIE approximate to 2-5), which could be associated with a CEPT mechanism. These results and conclusions have been questioned. Here, we present PCET rate constants for W derivatives with oxidized Ru- and Zn-porphyrin photosensitizers, extracted from laser flash-quench studies. Alternative quenching/photo-oxidation methods were used to avoid complications of previous studies, and both the amine and carboxylic acid groups of W were protected to make the indole the only deprotonable group. With a suitably tuned oxidant strength, we found an ET-limited reaction at pH < 4 and weakly pH-dependent rates at pH > similar to 5 that are intrinsic to the PCET of the indole group with water (H2O) as the proton acceptor. The observed rate constants are up to more than 100 times higher than those measured for initial electron transfer, excluding the electron-first mechanism. Instead, the reaction can be attributed to CEPT. These conclusions are important for our view of CEPT in water and of PCET-mediated radical reactions with solvent-exposed tryptophan in natural systems.

    Ort, förlag, år, upplaga, sidor
    American Chemical Society (ACS)American Chemical Society (ACS), 2022
    Nationell ämneskategori
    Fysikalisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-476606 (URN)10.1021/jacs.2c00371 (DOI)000799141600033 ()35416654 (PubMedID)
    Forskningsfinansiär
    Vetenskapsrådet, 2020-05246Vetenskapsrådet, 2017-04992
    Tillgänglig från: 2022-06-27 Skapad: 2022-06-27 Senast uppdaterad: 2026-03-04Bibliografiskt granskad
    2. pH dependent Proton-Coupled Electron Transfer from Tryptophan Derivatives: the Overlooked Role of the Amino- and Carboxylic Acid Groups.
    Öppna denna publikation i ny flik eller fönster >>pH dependent Proton-Coupled Electron Transfer from Tryptophan Derivatives: the Overlooked Role of the Amino- and Carboxylic Acid Groups.
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Proton-Coupled Electron Transfer (PCET) reactions are widespread in nature, in particular as key steps in biological electron transport chains that involve redox active amino acids, such as tyrosine and tryptophan. Previous kinetic studies on PCET from tryptophan derivatives in water, where water was the main proton acceptor, have shown a change in mechanism when the electron transfer driving force was varied. At higher driving forces, using strong oxidants, pH-independent PCET rate constants were measured and assigned to a stepwise electron transfer followed by proton transfer mechanism, while at lower driving forces the rate constants became pH dependent and larger than the neat electron transfer rate constant with the same oxidant, and the mechanism was assigned as concerted electron-proton transfer (CEPT). The observed pH dependence is, however, not expected from a CEPT mechanism where water is the proton acceptor. Recently, a new theoretical model was developed that proposed a large association constant between OH- and the indolic NH group that would explain the unusual pH dependent rate constants. 

    In this work, we first tested this new model by measuring fluorescence of different tryptophan derivatives at a range of pH-values, since OH- is a known quencher for indole emission. Our results indicate no binding with OH- up to at least pH 10. Instead, IR, 2DIR and Raman spectra showed important differences between indole and different tryptophan derivatives. Moreover, indole showed pH-independent PCET rate constants with a range of oxidant strengths, in contrast to the previous reports on tryptophane derivatives. This points to an involvement of the amino- and carboxylic acid groups, in particular the esterified carboxylic acid that was present in all tryptophan derivatives where pH dependence was previously observed. Our results indicate that the observed pH dependence is not intrinsic to PCET from the indole moiety, but rather originates from interactions with the amino- and carboxylic acid groups. These findings highlight the importance of considering potential interactions between redox active residues and the backbone-forming groups when studying PCET mechanisms in amino acids and proteins.

    Nyckelord
    Proton-Coupled Electron Transfer, kinetics, tryptophan oxidation, mechanistic study
    Nationell ämneskategori
    Fysikalisk kemi
    Forskningsämne
    Kemi med inriktning mot fysikalisk kemi; Kemi med inriktning mot fysikalisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-581399 (URN)
    Tillgänglig från: 2026-03-04 Skapad: 2026-03-04 Senast uppdaterad: 2026-03-04
    3. Direct Evidence of Bimolecular Proton-Coupled Energy Transfer at Room Temperature
    Öppna denna publikation i ny flik eller fönster >>Direct Evidence of Bimolecular Proton-Coupled Energy Transfer at Room Temperature
    2025 (Engelska)Ingår i: Journal of the American Chemical Society, ISSN 0002-7863, E-ISSN 1520-5126, Vol. 147, nr 28, s. 24181-24185Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    A new elementary reaction, denoted proton-coupled energy transfer (PCEnT), has been recently reported in a series of donor-acceptor molecules. In this reaction, excited state energy transfer is made possible by a simultaneous transfer of a proton on the energy acceptor. This type of elementary reaction could have, by analogy to proton-coupled electron transfer, an important role in photochemistry and energy transportation of biological systems. In the previously reported case, the reaction is shown to occur intramolecularly in a covalently linked system in a 77 K glass. In this work, we identify a suitable bimolecular system for PCEnT and provide direct evidence for PCEnT in a room temperature solution using fluorescence spectroscopy. Based on these results, we discuss some simple design principles for PCEnT, including some of the current obstacles in designing a successful system.

    Ort, förlag, år, upplaga, sidor
    American Chemical Society (ACS), 2025
    Nationell ämneskategori
    Fysikalisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-566289 (URN)10.1021/jacs.5c05126 (DOI)001522335400001 ()40607916 (PubMedID)2-s2.0-105009621494 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 2020-05246Vetenskapsrådet, 2024-04372
    Tillgänglig från: 2025-09-08 Skapad: 2025-09-08 Senast uppdaterad: 2026-03-04Bibliografiskt granskad
    4. Triplet-Triplet Annihilation from Benzo[ghi]perylene
    Öppna denna publikation i ny flik eller fönster >>Triplet-Triplet Annihilation from Benzo[ghi]perylene
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Triplet-triplet annihilation is a photophysical phenomenon where two low-energy triplets combine to generate a higher energy singlet. This way, low energy photons can be used to generate a high energy species that can be used to activate photochemical processes, of interest for photoredox catalysis and solar energy conversion, or decay by emitting a high energy photon in so-called p-type delayed fluorescence with potential applications in optoelectronics.

    In this work, we demonstrate triplet-triplet annihilation from benzo[ghi]perylene in solution, both from direct excitation and from sensitization with tris(2,2′-bipyridine)ruthenium [Ru(bpy)3]2+. From transient absorption and emission results, we extract the intrinsic triplet lifetime τT and the annihilation rate constant kTTA. Our results indicate benzo[ghi]perylene as a suitable candidate for triplet-triplet annihilation applications. Furthermore, we observe the repopulation of [Ru(bpy)3]2+ excited state from benzo[ghi]perylene singlet, resulting in simultaneous long-lived emission from both species. This observation provides a strategy to extend the lifetime of a short-lived triplet (at the expense of quantum yield), and to tune the color of the resulting emission by changing the concentration of the individual components. These results are interesting for the design of optoelectronic systems.

    Nyckelord
    Triplet-Triplet Annihilation, delayed fluorescence, triplet sensitization, benzo[ghi]perylene, aromatic compounds
    Nationell ämneskategori
    Fysikalisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-581400 (URN)
    Tillgänglig från: 2026-03-04 Skapad: 2026-03-04 Senast uppdaterad: 2026-03-04
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  • Disputation: 2026-04-24 13:15 Universitetshuset, sal IX, Uppsala
    Skogholt, Christoffer
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Teologiska fakulteten, Teologiska institutionen.
    From selfish genes to altruistic communities?: Evolution, rhetoric, and the possibility of socially shared moral agency2026Doktorsavhandling, monografi (Övrigt vetenskapligt)
    Abstract [en]

    This study analyses the possibility of “locating” moral altruism with the help of current evolutionary theory. This is an issue whose relevance for the philosophy of religion is clarified in the first chapter with the help of three framings:

    1. What would the success or failure of locating moral altruism reveal about the “ethos of the cosmos”? The ethos of the cosmos refers to whether or not it is hospitable to the evolution and exercise of moral agency.

    2. In many religious traditions, humans are claimed to be made in the “image of God”—which is usually taken to imply that humans are capable of moral altruism. However, if evolution, as some evolutionary thinkers seem to argue, makes the emergence of such capacities highly unlikely, then that is an issue of interest for the philosophy of religion. 

    3. A third question is whether altruism, if possible, would be “analogically” or “dialectically” related to the evolved emotional dispositions of humans and to the logic of the evolutionary process. That is, would moral altruism require us to rebel against our evolved nature, or would it be a matter of letting our evolved nature flourish by transcending the logic of its evolutionary origin? 

    A basic idea explored in the dissertation is that how one answers these questions has to do with how one construes “transcendence”: whether transcendence is a matter of dialectically negating, or analogically going beyond, that which is transcended.

    The dissertation consists of three main parts. 

    The first offers a detailed analysis of how Richard Dawkins—as one of the most influential proponents of an understanding of evolution that appears to render altruism highly unlikely—argues for this position.

    In the second part, a presentation and analysis of common evolutionary approaches to psychology in general, and moral psychology in particular, is provided. 

    The third part is a presentation of the evolutionary anthropology of the primatologist and psychologist Michael Tomasello. Tomasello’s account provides an empirically based argument for the evolutionary possibility of moral altruism.

    The last chapter summarises and synthesises the analyses previously made, and the idea of a cosmic “cooperative” ethos is explored. 

    There, it is also suggested that there is another sense in which our ontological commitments may be relevant for “locating” moral altruism; not in the sense of explaining their evolutionary emergence but in interpreting their significance. 

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    Errata
  • Disputation: 2026-04-27 09:15 H:son Holmdahlsalen, Uppsala
    Al-Shamkhi, Nasrin
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för medicinska vetenskaper, Endokrinologi och mineralmetabolism.
    Nonfunctioning pituitary adenoma–clinical outcome and prognostic factors2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Nonfunctioning pituitary adenomas (NFPA) are benign lesions that do not give rise to clinically excessive levels of pituitary hormones; on the contrary, they can cause pituitary deficiency. Due to the close anatomical relationship between the pituitary gland and the optic chiasm, visual disturbances do also occur. The clinical presentation and outcome of NFPAs are diverse.

    In this thesis, the aim was to shed further light on clinical outcome, including how the patients experience their quality of life, after surgery due to NFPA and any prognostic factors.

    In Paper I, a registry-based study, there was a significant increase in anterior pituitary deficiency at one year postoperatively compared to preoperatively. Even though only significant for the TSH axis, changes in the hormonal function of the anterior pituitary axes continued to occur between one and five years postoperatively.

    In Paper II, all pituitary tumours were classified according to the World Health Organization’s classification, which includes transcription factor analysis. Binary logistic regression showed that in addition to older age at time of surgery and larger preoperative tumour volume, having a silent corticotroph tumour (SCT) was associated with an increased likelihood of postoperative pituitary deficiency compared to a silent gonadotroph tumour.

    In Paper III, patients were interviewed about their quality of life and view on the healthcare they had received. By inductive content analysis a main theme, Life has changed but not necessarily for the worse, and the subthemes: The knowledge about the tumour evoked existential concerns, Suffering became a part of life, and Finding comfort in a new everyday life were identified.

    In conclusion, there is reason to be aware of late changes in pituitary function, even when radiotherapy treatment has not been used, and SCT patients might benefit from more frequent hormonal evaluations. Additionally, NFPA patients declared that the diagnosis and its treatment had affected them, tempering aspects were also recognised. Overall, the participants’ expectations and experiences were influenced by the communication between them and the healthcare providers.

    To unveil the implications of NFPAs, prospective studies with harmonised definitions of deficiency in each pituitary axis, long enough postoperative follow-up time, and correct classification of NFPA type are needed. Besides that, to capture the patients’ perspectives more studies with a qualitative methodology are needed; hence, qualitative methodology allows one to move beyond the clinicians’ perspective.

    Delarbeten
    1. Pituitary function before and after surgery for nonfunctioning pituitary adenomas–data from the Swedish Pituitary Register
    Öppna denna publikation i ny flik eller fönster >>Pituitary function before and after surgery for nonfunctioning pituitary adenomas–data from the Swedish Pituitary Register
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    2023 (Engelska)Ingår i: European Journal of Endocrinology, ISSN 0804-4643, E-ISSN 1479-683X, Vol. 189, nr 2, s. 217-224Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Objective: Data on pre- and postoperative pituitary function in nonfunctioning pituitary adenomas (NFPA) are not consistent. We aimed to investigate pituitary function before and up to 5 years after transsphenoidal surgery with emphasis on the hypothalamic-pituitary-adrenal axis (HPA).

    Design and methods: Data from the Swedish Pituitary Register was used to analyze anterior pituitary function in 838 patients with NFPA diagnosed between 1991 and 2014. Patients who were reoperated or had received radiotherapy were excluded.

    Results: Preoperative ACTH, TSH, LH/FSH, and GH deficiencies were reported in 31% (236/755), 39% (300/769), 51% (378/742), and 28% (170/604) of the patients, respectively. Preoperative median tumor volume was 5.0 (2.4-9.0) cm(3). Among patients with preoperative, 1 year and 5 years postoperative data on the HPA axis (n = 428), 125 (29%) were ACTH-deficient preoperatively. One year postoperatively, 26% (32/125) of them had recovered ACTH function while 23% (70/303) patients had developed new ACTH deficiency. Thus, 1 year postoperatively, 163 (38%) patients were ACTH-deficient (P < .001 vs. preoperatively). No further increase was seen 5 years postoperatively (36%, P = .096). At 1 year postoperatively, recoveries in the TSH and LH/FSH axes were reported in 14% (33/241) and 15% (46/310), respectively, and new deficiencies in 22% (88/403) and 29% (83/288), respectively.

    Conclusions: Adrenocorticotrophic hormone deficiency increased significantly at 1 year postoperatively. Even though not significant, some patients recovered from or developed new deficiency between 1 and 5 years postoperatively. This pattern was seen in all axes. Our study emphasizes that continuous individual evaluations are needed during longer follow-up of patients operated for NFPA.

    Ort, förlag, år, upplaga, sidor
    Oxford University Press, 2023
    Nyckelord
    pituitary adenoma, transsphenoidal surgery, pituitary insufficiency, HPA axis, pituitary register
    Nationell ämneskategori
    Endokrinologi och diabetes Kirurgi Cancer och onkologi
    Identifikatorer
    urn:nbn:se:uu:diva-509976 (URN)10.1093/ejendo/lvad104 (DOI)001046486000001 ()37551511 (PubMedID)
    Forskningsfinansiär
    Region Örebro län
    Tillgänglig från: 2023-08-29 Skapad: 2023-08-29 Senast uppdaterad: 2026-03-11Bibliografiskt granskad
    2. Corticotroph Tumour Type Influences Clinical Behaviour in Patients With Nonfunctioning Pituitary Neuroendocrine Tumours
    Öppna denna publikation i ny flik eller fönster >>Corticotroph Tumour Type Influences Clinical Behaviour in Patients With Nonfunctioning Pituitary Neuroendocrine Tumours
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    2026 (Engelska)Ingår i: Endocrinology, Diabetes & Metabolism, E-ISSN 2398-9238, Vol. 9, nr 1, artikel-id e70143Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    INTRODUCTION: This study aims to describe whether the clinical behaviour of nonfunctioning pituitary neuroendocrine tumours/nonfunctioning pituitary adenomas (NF-PitNETs/NFPAs) is affected by pituitary cell lineage differentiation, focusing on patients with silent corticotroph tumours (SCTs) and silent gonadotroph tumours (SGTs).

    METHODS: Patients (N = 101) who underwent primary surgery for NF-PitNETs/NFPAs from August 2014 to March 2020 at Uppsala University Hospital were included. Data on sex, age, MRI, pituitary function and immunohistochemical analysis of anterior pituitary hormone and transcription factor expression, were explored.

    RESULTS: Seventy-three patients had SGTs, and 18 had SCTs. Binary logistic regression revealed that having SCT versus SGT (OR 6.41 (CI: 1.20-34.42), p = 0.03), being older at the time of surgery (OR 1.07 (CI: 1.02-1.12), p = 0.01), and having a larger preoperative tumour volume (OR 1.17 (CI: 1.04-1.32), p = 0.01) were associated with an increased likelihood of postoperative pituitary failure. Patients with preoperative pituitary failure were older at the time of surgery (p = 0.01) and more often had preoperative elevation of prolactin levels (p = 0.01) than patients without preoperative pituitary failure. SCT patients were younger at the time of surgery than SGT patients (p = 0.003), but no significant difference in preoperative tumour volume was detected.

    CONCLUSION: The results indicate that cell lineage differentiation in NF-PitNETs/NFPAs influences clinical behaviour. Patients with SCTs were younger at the time of surgery, and harbouring a SCT was associated with an increased likelihood of having postoperative pituitary failure. These findings emphasise the importance of routine immunohistochemical analyses of anterior pituitary hormone and transcription factor expression to identify silent corticotroph tumours.

    Ort, förlag, år, upplaga, sidor
    John Wiley & Sons, 2026
    Nyckelord
    hypopituitarism, pituitary neuroendocrine tumour, transcription factors
    Nationell ämneskategori
    Endokrinologi och diabetes Cancer och onkologi
    Identifikatorer
    urn:nbn:se:uu:diva-572962 (URN)10.1002/edm2.70143 (DOI)001631423800001 ()41351299 (PubMedID)2-s2.0-105024119052 (Scopus ID)
    Tillgänglig från: 2025-12-09 Skapad: 2025-12-09 Senast uppdaterad: 2026-03-18Bibliografiskt granskad
    3. The impact of a non-functioning pituitary adenoma on life– A qualitative study of patients’ experiences
    Öppna denna publikation i ny flik eller fönster >>The impact of a non-functioning pituitary adenoma on life– A qualitative study of patients’ experiences
    2026 (Engelska)Ingår i: PLOS ONE, E-ISSN 1932-6203, Vol. 21, nr 3, artikel-id e0345909Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Purpose: Most studies regarding quality of life in patients with non-functioning pituitary adenoma are based on general questionnaires that might not capture disease-specific aspects, making further exploration of patients’ experiences with non-functioning pituitary adenoma necessary. This study aimed to describe how patients that have undergone surgery due to non-functioning pituitary adenoma experience the effects of the disease on their life.

    Methods: Semi-structured interviews were held with eight participants who had undergone surgery due to non-functioning pituitary adenoma. Participants were recruited from an outpatient endocrinology clinic at a tertiary hospital in Sweden. Inductive qualitative content analysis was used.

    Results: The analysis identified an overarching theme, Life has changed but not necessarily for the worse, and three subthemes: The knowledge about the tumour evoked existential concerns, Suffering became a part of life and Finding comfort in a new everyday life.

    Conclusion: The findings show that the participants’ lives have changed due to non-functioning pituitary adenoma. While this change was not always for the worse, the quality of life was negatively impacted for some, despite optimal treatment. A changed view on life and general trust in the healthcare system could temper the impact of non-functioning pituitary adenoma. Moreover, communication between healthcare professionals and patients remains a central aspect of patients’ experiences.

    Ort, förlag, år, upplaga, sidor
    Public Library of Science (PLoS), 2026
    Nationell ämneskategori
    Endokrinologi och diabetes
    Identifikatorer
    urn:nbn:se:uu:diva-580213 (URN)10.1371/journal.pone.0345909 (DOI)001730358400002 ()41915654 (PubMedID)
    Forskningsfinansiär
    Region Örebro län
    Tillgänglig från: 2026-02-23 Skapad: 2026-02-23 Senast uppdaterad: 2026-04-13Bibliografiskt granskad
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    UUThesis_Al-Shamkhi,N-2026
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  • Disputation: 2026-04-27 14:00 Humanistiska Teatern, Uppsala
    Ruby, Ahmed
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Språkvetenskapliga fakulteten, Institutionen för lingvistik och filologi.
    Modeling Implicit Discourse Relations Across Modalities and Languages2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Ideas in communication do not stand in isolation, but are linked to each other through discourse relations such as cause, contrast, and elaboration. While some of these relations are explicitly marked by connectives, such as "so", "but", and "then", many are left implicit. Identifying these implicit relations is particularly challenging as it requires inferring meaning from context. This context is not always captured by text, since cues may be distributed across modalities. This dissertation therefore focuses on modeling implicit discourse relations across modalities and languages to better capture the contextual information needed for identification.

    In this dissertation, I present a controlled approach to studying how prosody relates to implicit discourse relations. I construct a dataset of ambiguous implicit discourse relations in text and speech for English and Egyptian Arabic. I then conduct a controlled experiment to examine the impact of prosody when context is absent. I find that speakers prosodically distinguish between causal and concessive relations, using features such as pause duration and pitch variation. 

    To explore this at scale, I introduce a novel method for automatically constructing implicit discourse relation datasets across text, speech, and video modalities in four languages. This method identifies implicit relation instances by leveraging connective explicitation in translation, where translators insert explicit connectives for relations that remain implicit in the source. Using these datasets, I present modelling approaches for implicit discourse relation classification across text, speech, and video modalities and their combinations. I evaluate these approaches in four languages under both monolingual and multilingual settings. I find that text-based models outperform audio and video models. While adding audio or visual cues to text can improve performance, simply combining all modalities shows no improvement or even degrades performance compared to text alone. However, controlled fusion, which integrates text, speech, and visual cues through learned gating, consistently outperforms both single-modality and simple combination models, with substantial improvements for low-resource scenarios in the multilingual setting.

    Delarbeten
    1. Unpacking Ambiguous Structure: A Dataset for Ambiguous Implicit Discourse Relations for English and Egyptian Arabic
    Öppna denna publikation i ny flik eller fönster >>Unpacking Ambiguous Structure: A Dataset for Ambiguous Implicit Discourse Relations for English and Egyptian Arabic
    2023 (Engelska)Ingår i: Proceedings of the 4th Workshop on Computational Approaches to Discourse (CODI 2023), 2023, s. 126-144, artikel-id 2023.codi-1.16Konferensbidrag, Publicerat paper (Refereegranskat)
    Abstract [en]

    In this paper, we present principles of constructing and resolving ambiguity in implicit discourse relations. Following these principles, we created a dataset in both English and Egyptian Arabic that controls for semantic disambiguation, enabling the investigation of prosodic features in future work. In these datasets, examples are two-part sentences with an implicit discourse relation that can be ambiguously read as either causal or concessive, paired with two different preceding context sentences forcing either the causal or the concessive reading. We also validated both datasets by humans and language models (LMs) to study whether context can help humans or LMs resolve ambiguities of implicit relations and identify the intended relation. As a result, this task posed no difficulty for humans, but proved challenging for BERT/CamelBERT and ELECTRA/AraELECTRA models.

    Nationell ämneskategori
    Språkbehandling och datorlingvistik
    Forskningsämne
    Datorlingvistik
    Identifikatorer
    urn:nbn:se:uu:diva-545621 (URN)9781713882251 (ISBN)
    Konferens
    4th Workshop on Computational Approaches to Discourse (CODI 2023), 13-14 July 2023, Toronto, Canada
    Tillgänglig från: 2024-12-19 Skapad: 2024-12-19 Senast uppdaterad: 2026-03-03Bibliografiskt granskad
    2. Investigating the Role of Prosody in Disambiguating Implicit Discourse Relations in Egyptian Arabic
    Öppna denna publikation i ny flik eller fönster >>Investigating the Role of Prosody in Disambiguating Implicit Discourse Relations in Egyptian Arabic
    2024 (Engelska)Konferensbidrag, Publicerat paper (Refereegranskat)
    Abstract [en]

    We investigate whether prosody can help to disambiguate discourse relations. To address this question, we conducted a controlled experiment examining the impact of prosody in the absence of context, which is crucial for disambiguation. The aim was to determine whether specific prosodic features correlate with the disambiguation of implicit discourse relations. The dataset used in the experiment consisted of 22 pairs of examples, recorded by 21 native speakers of Egyptian Arabic. These examples are two-part sentences with an implicit discourse relation that can be ambiguously read as either causal or concessive, paired with two different preceding context sentences forcing either the causal or the concessive reading. We use linear mixed-effects models to analyze the impact of causal versus concessive discourse relations on prosodic features. We find that, relative to the causal relation, the concessive relation was produced with a longer pause duration between discourse segments, a wider f0 interquartile range for the second segment, and a lower last f0 max for the first segment. These differences are statistically significant, suggesting that speakers use prosody to distinguish between causal and concessive relations.

    Ort, förlag, år, upplaga, sidor
    The International Speech Communication Association (ISCA), 2024
    Serie
    Speech Prosody, E-ISSN 2333-2042
    Nationell ämneskategori
    Språkbehandling och datorlingvistik
    Forskningsämne
    Datorlingvistik
    Identifikatorer
    urn:nbn:se:uu:diva-545626 (URN)10.21437/SpeechProsody.2024-187 (DOI)
    Konferens
    Speech Prosody 2024 (SP2024) Conference, 2-5 July, 2024, Leiden, The Netherlands
    Tillgänglig från: 2024-12-19 Skapad: 2024-12-19 Senast uppdaterad: 2026-03-09Bibliografiskt granskad
    3. Multimodal Extraction and Recognition of Arabic Implicit Discourse Relations
    Öppna denna publikation i ny flik eller fönster >>Multimodal Extraction and Recognition of Arabic Implicit Discourse Relations
    2025 (Engelska)Ingår i: Proceedings of the 31st International Conference on Computational Linguistics / [ed] Owen Rambow; Leo Wanner; Marianna Apidianaki; Hend Al-Khalifa; Barbara Di Eugenio; Steven Schockaert, Association for Computational Linguistics, 2025, s. 5415-5429Konferensbidrag, Publicerat paper (Refereegranskat)
    Abstract [en]

    Most research on implicit discourse relation identification has focused on written language, however, it is also crucial to understand these relations in spoken discourse. We introduce a novel method for implicit discourse relation identification across both text and speech, that allows us to extract examples of semantically equivalent pairs of implicit and explicit discourse markers, based on aligning speech+transcripts with subtitles in another language variant. We apply our method to Egyptian Arabic, resulting in a novel high-quality dataset of spoken implicit discourse relations. We present a comprehensive approach to modeling implicit discourse relation classification using audio and text data with a range of different models. We find that text-based models outperform audio-based models, but combining text and audio features can lead to enhanced performance.

    Ort, förlag, år, upplaga, sidor
    Association for Computational Linguistics, 2025
    Nationell ämneskategori
    Språkbehandling och datorlingvistik
    Forskningsämne
    Datorlingvistik
    Identifikatorer
    urn:nbn:se:uu:diva-574567 (URN)979-8-89176-196-4 (ISBN)
    Konferens
    31st International Conference on Computational Linguistics (COLING 2025), January 19-24, 2025, Abu Dhabi, United Arab Emirates
    Tillgänglig från: 2026-01-05 Skapad: 2026-01-05 Senast uppdaterad: 2026-03-03Bibliografiskt granskad
    4. Multilingual Extraction and Recognition of Implicit Discourse Relations in Speech and Text
    Öppna denna publikation i ny flik eller fönster >>Multilingual Extraction and Recognition of Implicit Discourse Relations in Speech and Text
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Implicit discourse relation classification is a challenging task, as it requires inferring meaning from context. While contextual cues can be distributed across modalities and vary across languages, they are not always captured by text alone. To address this, we introduce an automatic method for distantly related and unrelated language pairs to construct a multilingual and multimodal dataset for implicit discourse relations in English, French, and Spanish.  For classification, we propose a multimodal approach that integrates textual and acoustic information through Qwen2-Audio, allowing joint modeling of text and audio for implicit discourse relation classification across languages. We find that while text-based models outperform audio-based models, integrating both modalities can enhance performance, and cross-lingual transfer can provide substantial improvements for low-resource languages.

    Nationell ämneskategori
    Språkbehandling och datorlingvistik
    Forskningsämne
    Datorlingvistik
    Identifikatorer
    urn:nbn:se:uu:diva-580472 (URN)
    Tillgänglig från: 2026-02-25 Skapad: 2026-02-25 Senast uppdaterad: 2026-03-03
    5. A Controlled Multimodal Fusion of Text, Speech, and Visual Cues for Implicit Discourse Relations
    Öppna denna publikation i ny flik eller fönster >>A Controlled Multimodal Fusion of Text, Speech, and Visual Cues for Implicit Discourse Relations
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Research on discourse relation recognition has been mainly text-based. However, speech and gesture may carry relevant cues. While integrating these modalities can benefit implicit discourse relation recognition, simple concatenation cannot fully capture how they complement each other. To address this, we introduce a controlled multimodal fusion approach that integrates text, speech, and co-speech gestures. This approach adaptively balances their contributions during prediction. To enable this multimodal setting, we extend existing text–audio datasets by adding the corresponding video for each instance. We present comprehensive experiments on implicit discourse relation recognition across four languages. We find that controlled fusion outperforms both text-only and naive concatenation baselines, particularly in multilingual settings where it yields consistent gains across languages, with substantial improvements for low-resource languages.

    Nationell ämneskategori
    Språkbehandling och datorlingvistik
    Forskningsämne
    Datorlingvistik; Datorlingvistik; Datorlingvistik
    Identifikatorer
    urn:nbn:se:uu:diva-580476 (URN)
    Tillgänglig från: 2026-02-25 Skapad: 2026-02-25 Senast uppdaterad: 2026-03-03
    Ladda ner fulltext (pdf)
    UUThesis_Ahmed,R-2026
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  • Disputation: 2026-04-28 09:00 Rudbecksalen, Uppsala
    Papakyriacou, Irineos
    Uppsala universitet, Science for Life Laboratory, SciLifeLab. Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för immunologi, genetik och patologi, Cancerimmunterapi. Uppsala University.
    Protein Neddylation as an Immune Checkpoint: A Dual Role in Innate Immunity and Resistance to Cancer Immunotherapy2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The remarkable clinical benefits in cancer patients receiving immunotherapy have ignited the research enthusiasm on cancer immunotherapy.  However, primary resistance to immune checkpoint blockade (ICB) therapy remains one of the major challenges to effective immunotherapy in many patients. A deeper understanding of tumor-intrinsic mechanisms is therefore essential to identify new therapeutic targets and improve ICB outcomes. This project aimed to uncover novel immune regulatory pathways in cancer cells that could enhance PD-1/PD-L1-targeted therapies.

    In Paper I, we performed genome-wide CRISPR/Cas9 screens in a tumor-immune co-culture system, and we identified NEDD8 as a key resistance gene to PD-1 blockade in triple-negative breast cancer (TNBC). NEDD8 deletion in cancer cells increased tumor immunogenicity, enhanced antigen presentation (e.g., HLA-DR), and improved responses to anti-PD-1 and anti-PD-L1 therapy. In immunocompetent mice, Nedd8 loss in tumors enhanced PD-1/PD-L1 efficacy, leading to CD8+ T cell-dependent tumor eradication, prolonged survival, and activation of multiple immune pathways.

    In Paper II, integrated scRNA-seq and high-resolution spatial transcriptomics revealed that cancer-cell neddylation regulates immune cell infiltration and function. Nedd8 deletion in cancer cells increased inflammatory myeloid cell infiltration and amplified adaptive responses to PD-1 blockade. High-content drug screening showed that protein neddylation sensitized human breast cancer cells to lipid metabolism inhibitors e.g., statin drugs and ferroptosis inducers. These compounds synergize with PD-1 blockade and protected the mice from tumor rechallenge in vivo.

    In Paper III, we identified NEDD8 as a myeloid-intrinsic immune checkpoint that restrains innate immune activation. NEDD8 loss in human monocytic THP-1 cancer cells enhanced pro-inflammatory signaling and revealed mTORC1-dependent vulnerabilities. Statin treatment, which drives pathway changes similar to NEDD8-deficient human cells, amplified strong inflammatory responses in human primary CD14+ monocytes through mTOR signaling, and improved early anti-tumor responses in immunocompetent mice.

    Altogether, this work uncovers previously unrecognized mechanisms by which NEDD8 regulates tumor and myeloid immunity, providing new avenues to potentiate innate and adaptive anti-tumor responses and improve cancer immunotherapy outcomes.

    Delarbeten
    1. Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer
    Öppna denna publikation i ny flik eller fönster >>Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer
    Visa övriga...
    2024 (Engelska)Ingår i: Nature Communications, E-ISSN 2041-1723, Vol. 15, nr 1, artikel-id 3581Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Immune checkpoint blockade therapy aims to activate the immune system to eliminate cancer cells. However, clinical benefits are only recorded in a subset of patients. Here, we leverage genome-wide CRISPR/Cas9 screens in a Tumor-Immune co-Culture System focusing on triple-negative breast cancer (TNBC). We reveal that NEDD8 loss in cancer cells causes a vulnerability to nivolumab (anti-PD-1). Genetic deletion of NEDD8 only delays cell division initially but cell proliferation is unaffected after recovery. Since the NEDD8 gene is commonly essential, we validate this observation with additional CRISPR screens and uncover enhanced immunogenicity in NEDD8 deficient cells using proteomics. In female immunocompetent mice, PD-1 blockade lacks efficacy against established EO771 breast cancer tumors. In contrast, we observe tumor regression mediated by CD8+ T cells against Nedd8 deficient EO771 tumors after PD-1 blockade. In essence, we provide evidence that NEDD8 is conditionally essential in TNBC and presents as a synergistic drug target for PD-1/L1 blockade therapy. NEDD8 is a ubiquitin-like protein that governs protein neddylation, previously demonstrated to be essential for cell survival. Here the authors show that NEDD8 loss in breast cancer cells is associated with enhanced immunogenicity and increased sensitivity to PD-1 blockade in preclinical cancer models.

    Ort, förlag, år, upplaga, sidor
    Springer Nature, 2024
    Nationell ämneskategori
    Cancer och onkologi Immunologi inom det medicinska området
    Identifikatorer
    urn:nbn:se:uu:diva-541469 (URN)10.1038/s41467-024-47987-x (DOI)001210983300027 ()38678024 (PubMedID)
    Forskningsfinansiär
    Swedish National Infrastructure for Computing (SNIC), 2017-7-265Swedish National Infrastructure for Computing (SNIC)Cancerfonden, 220474JIAStiftelsen för strategisk forskning (SSF), FFL21-0043Vetenskapsrådet, 2022-01461Vetenskapsrådet
    Tillgänglig från: 2024-11-12 Skapad: 2024-11-12 Senast uppdaterad: 2026-03-04Bibliografiskt granskad
    2. Cancer intrinsic protein neddylation modulates the intra-tumoral immune landscape to constrain immune checkpoint blockade therapy
    Öppna denna publikation i ny flik eller fönster >>Cancer intrinsic protein neddylation modulates the intra-tumoral immune landscape to constrain immune checkpoint blockade therapy
    Visa övriga...
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Medicin och hälsovetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-580633 (URN)
    Tillgänglig från: 2026-02-26 Skapad: 2026-02-26 Senast uppdaterad: 2026-03-04
    3. Targeting intracellular mechanisms to enhance sensitivity to TLR activation in myeloid cells
    Öppna denna publikation i ny flik eller fönster >>Targeting intracellular mechanisms to enhance sensitivity to TLR activation in myeloid cells
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Medicin och hälsovetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-580634 (URN)
    Tillgänglig från: 2026-02-26 Skapad: 2026-02-26 Senast uppdaterad: 2026-03-04
    Ladda ner fulltext (pdf)
    UUThesis_Papakyriacou,I-2026
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  • Disputation: 2026-04-28 13:15 Sonja Lyttkens (101121), Uppsala
    Caliskan, Sema
    Uppsala universitet, Teknisk-naturvetenskapliga vetenskapsområdet, Fysiska sektionen, Institutionen för fysik och astronomi, Teoretisk astrofysik.
    On the cosmic origins of copper, silver, and gold: atomic structure and 3D/non-LTE abundances2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The cosmic origin of elements heavier than iron remains one of the central open questions in astrophysics. These elements are produced through neutron-capture processes in a range of astrophysical sites. Disentangling their relative contributions and Galactic evolution relies on accurate stellar abundances.  However, this often requires modelling beyond the commonly used assumptions of one-dimensional (1D) atmospheres and local thermodynamic equilibrium (LTE). Non-LTE modelling, in turn, depends on comprehensive and reliable radiative and collisional atomic data, which are frequently incomplete or uncertain for heavy elements. This thesis aims to construct accurate 3D/non-LTE models for heavy elements and to demonstrate how improvements in atomic data propagate into astrophysical conclusions.

    A key requirement for non-LTE modelling is accurate energy levels and oscillator strengths, for which we often rely on theoretical atomic structure calculations. For atoms with complex structures, these calculations must balance accuracy against computational feasibility. In the first paper, we propose a method to represent the atomic wavefunction accurately while keeping it compact within small-scale atomic structure calculations of neutral gold. We show that this approach improves agreement with experimental energy levels and transition probabilities.

    Another major uncertainty in non-LTE modelling is the treatment of inelastic collisions with neutral hydrogen. In the second paper, we compute new hydrogen-collision rate coefficients for copper using physically motivated methods. With these updated rates, we derive 1D non-LTE Cu abundances for a large sample of dwarfs and giants spanning a wide metallicity range. The new collision data resolve the discrepancy between dwarfs and giants at low metallicity and reduce the line-to-line scatter. The revised non-LTE copper trends provide new insight into the nucleosynthetic origin and enrichment history of copper, with implications for the hierarchical build-up of the Milky Way.

    In the third paper, we present the first 3D non-LTE analysis of neutral silver, a tracer of the weak r-process. Using the Sun as a benchmark, we test the silver model atom and quantify 3D and non-LTE effects. We carefully curate radiative and collisional data for silver, including newly computed oscillator strengths and inelastic hydrogen-collision rates. We revise the solar photospheric silver abundance and find it to be 0.27 dex higher in 3D non-LTE than the previously adopted 3D LTE value. This correction resolves the earlier discrepancy with the meteoritic abundance using fully ab initio 3D non-LTE modelling, without empirical calibration, supporting the confidence in our models.

    Delarbeten
    1. Targeted optimization in small-scale atomic structure calculations: application to Au I
    Öppna denna publikation i ny flik eller fönster >>Targeted optimization in small-scale atomic structure calculations: application to Au I
    2024 (Engelska)Ingår i: Journal of Physics B: Atomic, Molecular and Optical Physics, ISSN 0953-4075, E-ISSN 1361-6455, Vol. 57, nr 5, artikel-id 055003Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    The lack of reliable atomic data can be a severe limitation in astrophysical modelling, in particular of events such as kilonovae that require information on all neutron-capture elements across a wide range of ionization stages. Notably, the presence of non-orthonormalities between electron orbitals representing configurations that are close in energy can introduce significant inaccuracies in computed energies and transition probabilities. Here, we propose an explicit targeted optimization (TO) method that can effectively circumvent this concern while retaining an orthonormal orbital basis set. We illustrate this method within the framework of small-scale atomic structure models of Au I, using the Grasp2018 multiconfigurational Dirac-Hartree-Fock atomic structure code. By comparing to conventional optimization schemes we show how a TO approach improves the energy level positioning and ordering. TO also leads to better agreement with experimental data for the strongest E1 transitions. This illustrates how small-scale models can be significantly improved with minor computational costs if orbital non-orthonormalities are considered carefully. These results should prove useful to multi-element atomic structure calculations in, for example, astrophysical opacity applications involving neutron-capture elements.

    Ort, förlag, år, upplaga, sidor
    Institute of Physics Publishing (IOPP), 2024
    Nyckelord
    atomic structure, atomic data, MCDHF calculations, numerical methods
    Nationell ämneskategori
    Atom- och molekylfysik och optik
    Identifikatorer
    urn:nbn:se:uu:diva-528187 (URN)10.1088/1361-6455/ad2b71 (DOI)001178074200001 ()
    Forskningsfinansiär
    Vetenskapsrådet, 2020-05467Vetenskapsrådet, 2020-03940Vetenskapsrådet
    Tillgänglig från: 2024-05-16 Skapad: 2024-05-16 Senast uppdaterad: 2026-03-05Bibliografiskt granskad
    2. Revisiting inelastic Cu + H collisions and the non-LTE Galactic evolution of copper
    Öppna denna publikation i ny flik eller fönster >>Revisiting inelastic Cu + H collisions and the non-LTE Galactic evolution of copper
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    2025 (Engelska)Ingår i: Astronomy and Astrophysics, ISSN 0004-6361, E-ISSN 1432-0746, Vol. 696, artikel-id A210Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    The Galactic evolution of copper remains poorly understood, partly due to the strong departures from local thermodynamic equilibrium (LTE) affecting Cu I lines. A key source of uncertainty in non-LTE modelling is the treatment of inelastic Cu + H collisions. We present new rate coefficients based on a combined asymptotic LCAO (linear combination of atomic orbitals) and free electron model approach, which show significant differences from previous calculations. Applying these updated rates to non-LTE stellar modelling, we find reduced line-to-line scatter and improved consistency between metal-poor dwarfs and giants. Our non-LTE analysis reveals a strong upturn in the [Cu/Fe] trend towards lower [Fe/H] < -1.7. We show that this may reflect the interplay between external enrichment of Cu-rich material of the Milky Way halo at low metallicities, and metallicity-dependent Cu yields from rapidly rotating massive stars. This highlights the unique diagnostic potential of accurate Cu abundances for understanding both stellar and Galactic evolution.

    Ort, förlag, år, upplaga, sidor
    EDP Sciences, 2025
    Nyckelord
    atomic processes, line: formation, radiative transfer, stars: abundances, galaxy: abundances
    Nationell ämneskategori
    Astronomi, astrofysik och kosmologi
    Identifikatorer
    urn:nbn:se:uu:diva-556616 (URN)10.1051/0004-6361/202554251 (DOI)001476794000018 ()
    Forskningsfinansiär
    Vetenskapsrådet, VR 2020-03940Vetenskapsrådet, VR 2020-03404Vetenskapsrådet, 2022-06725EU, Europeiska forskningsrådet, 852977Knut och Alice Wallenbergs StiftelseCrafoordska stiftelsen, CR 2024-0015
    Tillgänglig från: 2025-05-15 Skapad: 2025-05-15 Senast uppdaterad: 2026-03-05Bibliografiskt granskad
    3. Ag I model atom and the 3D non-LTE solar silver abundance
    Öppna denna publikation i ny flik eller fönster >>Ag I model atom and the 3D non-LTE solar silver abundance
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Astronomi, astrofysik och kosmologi
    Identifikatorer
    urn:nbn:se:uu:diva-581202 (URN)
    Tillgänglig från: 2026-03-03 Skapad: 2026-03-03 Senast uppdaterad: 2026-03-05
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    fulltext
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  • Disputation: 2026-04-29 13:15 Polhemsalen, Uppsala
    Pavelka, Martin
    Uppsala universitet, Teknisk-naturvetenskapliga vetenskapsområdet, Fysiska sektionen, Institutionen för fysik och astronomi, FREIA. Uppsala University.
    Take It for a Spin: Experiments on Ultrafast Magnetization Dynamics in Ferromagnetic Metals and Insulators2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The study of ferromagnetic dynamics on the femtosecond timescale constitutes a central pillar of ultrafast science, investigating pathways to future THz technologies, such as all-optical magnetization switching. Yet, the ultimate microscopic channels facilitating angular momentum transfer, whether mediated by spin-orbit coupling, ultrafast magnon generation, or superdiffusive spin currents, remain a subject of an intense debate. Additionally, the emerging field of magnonics seeks to utilize spin waves as information carriers, looking to apply novel materials with strong magnon-phonon coupling, such as the recently discovered two-dimensional van der Waals magnets. This thesis investigates these ultrafast dynamics in representative materials from the two fundamental categories: ferromagnetic metals and insulators.

    First, we analyzed element-specific spin and charge dynamics in a photoexcited metallic Co50Pt50 alloy using time-resolved X-ray magnetic circular dichroism and absorption spectroscopy at the Co L3-edge. These experiments utilized the new helical afterburner undulator at the FLASH free-electron laser (Hamburg, Germany) to generate femtosecond soft X-ray pulses with near 100% circular polarization. We identified spin-orbit coupling as the dominant microscopic parameter driving demagnetization. Comparisons with previous measurements on CoPd revealed that the 3d/5d CoPt alloy demonstrates significantly higher demagnetization efficiency, requiring reduced electronic heating to achieve comparable magnetic quenching due to enhanced spin-flip probabilities associated with the higher spin-orbit coupling of Pt.

    Second, we examined phonon and spin dynamics in exciton-driven insulating CrI3 flakes using time-resolved magneto-optical Kerr effect and reflectivity measurements. By selectively pumping its A- and B-excitons, we tracked coherent and incoherent dynamics across femtosecond, picosecond and nanosecond timescales. We detected coherent optical phonon modes at 2.4 THz and 3.9 THz, corresponding to Cr-I bond bending and stretching, which we found to modulate magnetism via exchange interaction modifications. This lattice-spin coupling is tunable by excitation density and exciton choice. While the A-exciton drives uniform phonon-driven demagnetization and localized spin oscillations, the low-frequency mode excited by the B-exciton exhibits anomalous behavior, potentially signaling a topological radial magnon mode at 2.4 THz carrying orbital angular momentum. Quantitatively distinct demagnetization behaviors were also observed for each exciton in the incoherent regime.

    Delarbeten
    1. Femtosecond charge and spin dynamics in a Co50Pt50 alloy
    Öppna denna publikation i ny flik eller fönster >>Femtosecond charge and spin dynamics in a Co50Pt50 alloy
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    2025 (Engelska)Ingår i: Structural Dynamics, E-ISSN 2329-7778, Vol. 12, nr 2, artikel-id 024303Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    The use of advanced x-ray sources plays a key role in the study of dynamic processes in magnetically ordered materials. The progress in x-ray free-electron lasers enables the direct and simultaneous observation of the femtosecond evolution of electron and spin systems through transient x-ray absorption spectroscopy and x-ray magnetic circular dichroism, respectively. Such experiments allow us to resolve the response seen in the population of the spin-split valence states upon optical excitation. Here, we utilize circularly polarized ultrashort soft x-ray pulses from the new helical afterburner undulator at the free-electron laser FLASH in Hamburg to study the femtosecond dynamics of a laser-excited CoPt alloy at the Co L3-edge absorption. Despite employing a weaker electronic excitation level, we find a comparable demagnetization for the Co 3d-states in CoPt compared to previous measurements on CoPd. This is attributed to the distinctly different spin–orbit coupling between 3d and 4d vs 3d and 5d elements in the corresponding alloys and multilayers.

    Ort, förlag, år, upplaga, sidor
    American Institute of Physics (AIP), 2025
    Nationell ämneskategori
    Den kondenserade materiens fysik Atom- och molekylfysik och optik Fysikalisk kemi Subatomär fysik
    Identifikatorer
    urn:nbn:se:uu:diva-556668 (URN)10.1063/4.0000297 (DOI)001478387200002 ()40290413 (PubMedID)2-s2.0-105003694319 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 2022-02881Knut och Alice Wallenbergs Stiftelse, 2022.0108Deutsche Forschungsgemeinschaft (DFG), 328545488
    Tillgänglig från: 2025-05-16 Skapad: 2025-05-16 Senast uppdaterad: 2026-01-15Bibliografiskt granskad
    2. First experiments with ultrashort, circularly polarized soft x-ray pulses at FLASH2
    Öppna denna publikation i ny flik eller fönster >>First experiments with ultrashort, circularly polarized soft x-ray pulses at FLASH2
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    2025 (Engelska)Ingår i: Structural Dynamics, E-ISSN 2329-7778, Vol. 12, nr 3, artikel-id 034301Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Time-resolved absorption spectroscopy and magnetic circular dichroism with circularly polarized soft x-rays (XAS and XMCD) are powerful tools to probe electronic and magnetic dynamics in magnetic materials element- and site-selectively. By employing these methods, groundbreaking results have been obtained, for instance, for magnetic alloys, which helped to fundamentally advance the field of ultrafast magnetization dynamics. At the free-electron laser facility FLASH, key capabilities for ultrafast XAS and XMCD experiments have recently improved. In an upgrade, an APPLE-III helical afterburner undulator was installed at FLASH2 in September 2023. This installation allows for the generation of circularly polarized soft x-ray pulses with a duration of a few tens of femtoseconds covering the L-3,L-2-edges of the important 3d transition metal elements with pulse energies of several mu J. Here, we present first experimental results with such ultrashort x-ray pulses from the FL23 beamline employing XMCD at the L-3,L-2-edges of the 3d metals, Co, Fe, and Ni. We obtain significant dichroic difference signals indicating a degree of circular polarization close to 100%. With the pulse-length preserving monochromator at beamline FL23 and an improved pump-laser setup, FLASH can offer important and efficient experimental instrumentation for ultrafast demagnetization studies and other investigations of ultrafast spin dynamics in 3d transition metals, multilayers, and alloys.

    Ort, förlag, år, upplaga, sidor
    American Institute of Physics (AIP), 2025
    Nationell ämneskategori
    Atom- och molekylfysik och optik Den kondenserade materiens fysik
    Identifikatorer
    urn:nbn:se:uu:diva-557868 (URN)10.1063/4.0000298 (DOI)001488980600001 ()40352094 (PubMedID)2-s2.0-105004988917 (Scopus ID)
    Forskningsfinansiär
    Deutsche Forschungsgemeinschaft (DFG)
    Tillgänglig från: 2025-06-03 Skapad: 2025-06-03 Senast uppdaterad: 2026-01-15Bibliografiskt granskad
    3. Non-equilibrium THz-phonon spin coupling in CrI3
    Öppna denna publikation i ny flik eller fönster >>Non-equilibrium THz-phonon spin coupling in CrI3
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    2026 (Engelska)Ingår i: Journal of Physics, Conference Series, ISSN 1742-6588, E-ISSN 1742-6596, Vol. 3161, nr 1Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Manipulating magnetism at the THz timescale in atomically thin ferromagnets by exploiting the interactions of spins with optical phonon modes presents an innovative idea for THz spintronics and magnonics. Utilizing the coupling of phonon modes to the magnetization could lead to new ways of generating and controlling spin wave excitations in future applications. We use femtosecond optical laser pulses to generate excitons, bound electron-hole pairs, in bulk-like ferromagnet CrI3 flakes and probe the subsequent charge and spin dynamics with optical pump-probe spectroscopy. In CrI3, exciton formation is known to drive coherent optical phonon modes with 2.4 and 3.9 THz frequencies corresponding to the bending and stretching of the Cr-I bonds. We show that both phonon modes also lead to magnetization oscillations. This establishes spin-phonon coupling for both modes, contrary to previous observations that only report the 3.9 THz phonon mode can influence the CrI3 magnetization.

    Nyckelord
    Ultrafast magnetism, Spin-lattice coupling, THz, Magnetic Two-Dimensional Materials
    Nationell ämneskategori
    Naturvetenskap Den kondenserade materiens fysik
    Forskningsämne
    Fysik med inriktning mot atom- molekyl- och kondenserande materiens fysik
    Identifikatorer
    urn:nbn:se:uu:diva-576424 (URN)10.1088/1742-6596/3161/1/012026 (DOI)
    Tillgänglig från: 2026-01-15 Skapad: 2026-01-15 Senast uppdaterad: 2026-03-03
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    UUThesis_Pavelka,M-2026
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  • Disputation: 2026-05-07 13:15 Fåhraeussalen, Rudbecklaboratoriet, Uppsala
    Pertsinidou, Eleftheria
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för immunologi, genetik och patologi, Vaskulärbiologi.
    Autoantibodies in rheumatoid arthritis and inflammatory bowel disease2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Autoantibodies are key features of several immune-mediated inflammatory diseases and may serve as biomarkers for diagnosis, prognosis, and disease stratification. The overall aim of this thesis was to investigate the role of autoantibodies for diagnosis and prognosis of rheumatoid arthritis (RA) and inflammatory bowel disease (IBD), with emphasis on their associations with age, sex, disease phenotype, severity, and preclinical disease development.

    In Study I, the occurrence of RA-associated autoantibodies was analysed in relation to age at diagnosis and sex. Anti-cyclic citrullinated peptide 2 (anti-CCP2) positivity was associated with younger age, whereas IgA rheumatoid factor (RF) was associated with higher age at diagnosis. These findings demonstrate that demographic factors influence serological phenotypes and should be considered in studies of RA.

    In Study II, individual autoantibodies and their combinations were examined in relation to clinical features at RA diagnosis. Anti-citrullinated protein/peptide antibodies (ACPAs) were associated with lower swollen and tender joint counts, while RF was associated with elevated inflammatory markers in an ACPA-dependent manner. No significant associations were observed for the composite DAS28 score, indicating that individual DAS28 components should be analysed separately when evaluating serological phenotypes.

    In Study III, the diagnostic and prognostic potential of IgG anti-integrin αvβ6 autoantibodies (anti-αvβ6) was investigated in newly diagnosed IBD. Anti-αvβ6 demonstrated high diagnostic accuracy for ulcerative colitis (UC) and was associated with greater disease extent and inflammatory activity. Although prognostic discrimination between indolent and aggressive UC was modest, persistent antibody levels were linked to a more severe disease course.

    In Study IV, the predictive ability of anti-αvβ6 for future UC was evaluated in population-based cohorts. Anti-αvβ6 was detectable years before clinical diagnosis, with predictive performance increasing closer to disease onset. Elevated levels were also observed in early life, indicating loss of tolerance long before clinical manifestation.

    Together, these findings demonstrate that autoantibody profiles reflect biologically meaningful heterogeneity in both RA and IBD, and support measurement of autoantibodies for risk stratification and biomarker-guided approaches in immune-mediated inflammatory diseases.

    Delarbeten
    1. Rheumatoid arthritis autoantibodies and their association with age and sex
    Öppna denna publikation i ny flik eller fönster >>Rheumatoid arthritis autoantibodies and their association with age and sex
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    2021 (Engelska)Ingår i: Clinical and Experimental Rheumatology, ISSN 0392-856X, E-ISSN 1593-098X, Vol. 39, nr 4, s. 879-882Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Objective. To examine the association between individual rheumatoid arthritis (RA) autoantibodies, sex and age at RA onset. Methods. Anti-CCP2, IgA-, IgG- and IgM-RF were analysed centrally in baseline sera from 1600 RA patients diagnosed within one year of RA symptom onset. Cut-offs for RF isotypes were determined at the 98th percentile based on RA-free controls, close to the 98.4% anti-CCP2 specificity. Results. Anti-CCP2 was found in 1020 patients (64%), IgA RF in 692 (43%), IgG RF in 529 (33%) and IgM RF in 916 (57%) of the patients. When assessed one by one, anti-CCP2 and IgM RF were both associated with lower age at RA diagnosis. When assessed in one joint model, the association to IgM RF weakened and a strong association between IgA RF and higher age at RA diagnosis appeared. IgA RF and IgG RF associated with male sex, and IgM RF with female sex, with no difference for anti-CCP2. When the model was adjusted for sex, the association between IgM RF and age disappeared, whereas the strong associations between IgA RF and high age and between anti-CCP2 and low age at diagnosis remained. Further adjustments for smoking, shared epitope and inclusion year did not change the outcome. Univariate analyses stratified on anti-CCP2 and IgA RF status confirmed the findings. Conclusion. Anti-CCP associate with low, and IgA RF with high age at RA onset. RFs and anti-CCP2 display opposing association with sex. These results underscore that studies on RA phenotypes in relation to autoantibodies should accommodate age and sex.

    Ort, förlag, år, upplaga, sidor
    CLINICAL & EXPER RHEUMATOLOGY, 2021
    Nyckelord
    rheumatoid arthritis, age of onset, rheumatoid factor, anti-citrullinated protein antibodies
    Nationell ämneskategori
    Klinisk medicin
    Identifikatorer
    urn:nbn:se:uu:diva-456205 (URN)000691869100023 ()33822709 (PubMedID)
    Forskningsfinansiär
    NordForsk, 90825
    Tillgänglig från: 2021-10-28 Skapad: 2021-10-28 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    2. In early rheumatoid arthritis, anticitrullinated peptide antibodies associate with low number of affected joints and rheumatoid factor associates with systemic inflammation
    Öppna denna publikation i ny flik eller fönster >>In early rheumatoid arthritis, anticitrullinated peptide antibodies associate with low number of affected joints and rheumatoid factor associates with systemic inflammation
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    2024 (Engelska)Ingår i: Annals of the Rheumatic Diseases, ISSN 0003-4967, E-ISSN 1468-2060, Vol. 83, nr 3, s. 277-287Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Objectives: To investigate how individual rheumatoid arthritis (RA) autoantibodies associate with individual signs and symptoms at the time of RA diagnosis.

    Methods: IgA, IgG, IgM rheumatoid factor (RF), antibodies against cyclic citrullinated peptide version 2 (anti-CCP2) and 16 individual antibodies against citrullinated protein (ACPA) reactivities were analysed centrally in baseline sera from 1600 patients with RA classified according to the 1987 American College of Rheumatology (ACR) criteria. These results were related to C-reactive protein (CRP), erythrocyte sedimentation rate (ESR), number of swollen and tender joints (SJC and TJC), 28-joint disease activity scores (DAS28 and DAS28CRP), global disease activity evaluated by the patients and Health Assessment Questionnaire, all obtained at baseline.

    Results: Individually, all autoantibodies except immunoglobulin G (IgG) RF associated with low SJC and TJC and with high ESR. In IgM RF-negative patients, ACPA associated strictly with low number of swollen and tender joints. This association persisted in multiple regression and stratified analyses where IgM and IgA RF instead associated with inflammation expressed as ESR. Among subjects without any ACPA peptide reactivity, there was no association between RF isotypes and ESR. The effect of RF on ESR increased with the number of ACPA reactivities, especially for IgM RF. In patients fulfilling the 1987 ACR criteria without taking RF into account, associations between IgM RF and high ESR, as well as between ACPA and low joint counts, remained.

    Conclusion: Whereas ACPA associate with low counts of affected joints in early RA, RF associates with elevated measures of systemic inflammation in an ACPA-dependent manner. This latter finding corroborates in vitro models of ACPA and RF in immune complex-induced inflammation. These phenotypic associations are independent of classification criteria.

    Ort, förlag, år, upplaga, sidor
    BMJ Publishing Group Ltd, 2024
    Nyckelord
    Arthritis, Rheumatoid, Autoantibodies, Rheumatoid Factor, Anti-Citrullinated Protein Antibodies, Autoimmune Diseases
    Nationell ämneskategori
    Klinisk medicin
    Identifikatorer
    urn:nbn:se:uu:diva-529831 (URN)10.1136/ard-2023-224728 (DOI)001110012400001 ()38049984 (PubMedID)
    Tillgänglig från: 2024-06-10 Skapad: 2024-06-10 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    3. Anti-integrin αvβ6 IgG antibody as a diagnostic and prognostic marker in ulcerative colitis: A cross-sectional and longitudinal study defining a specific disease phenotype
    Öppna denna publikation i ny flik eller fönster >>Anti-integrin αvβ6 IgG antibody as a diagnostic and prognostic marker in ulcerative colitis: A cross-sectional and longitudinal study defining a specific disease phenotype
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    2025 (Engelska)Ingår i: Journal of Crohn's & Colitis, ISSN 1873-9946, E-ISSN 1876-4479, Vol. 19, nr 5, artikel-id jjaf062Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background and Aims:

    The diagnostic and prognostic properties of anti-integrin alpha v beta 6 immunoglobulin G (IgG) autoantibodies in ulcerative colitis (UC) are poorly understood. We aimed to assess the diagnostic performance of anti-integrin alpha v beta 6 autoantibodies and examine their association with disease outcomes.

    Methods:

    Serum samples from a Swedish inception cohort of patients with suspected inflammatory bowel disease (IBD, n = 473) were analyzed using an in-house fluorescence enzyme immunoassay based on EliA technology. Findings were validated in a Norwegian population-based inception cohort (n = 570). Diagnostic performance was assessed by calculating the area under the curve (AUC) with 95% confidence intervals and determining sensitivity and specificity. Reclassification was evaluated using the net reclassification index.

    Results:

    In the discovery cohort, patients with UC, IBD-unclassified, or colonic Crohn's disease exhibited higher median autoantibody levels compared to symptomatic and healthy controls. In the validation cohort, the autoantibody demonstrated 79% sensitivity and 94% specificity for UC vs symptomatic controls at a cut-off of 400 UA/l. Its diagnostic performance (AUC = 0.92, 95% CI, 0.89-0.95) was superior to hs-CRP (AUC = 0.65, 95% CI, 0.60-0.70, P < .001) and faecal calprotectin (fcalpro) (AUC = 0.88, 95% CI, 0.84-0.92, P = .09). Combining the autoantibody with fcalpro further improved diagnostic accuracy (AUC = 0.97, 95% CI, 0.95-0.98) and patient reclassification (P < .001). Autoantibody positivity was associated with a severe phenotype of UC, characterised by increased inflammatory activity and higher IL-17A and granzyme B levels. Higher autoantibody levels were linked to an aggressive disease course, remaining stable in aggressive UC but decreasing in indolent disease (P = .003).

    Conclusions:

    Anti-integrin alpha v beta 6 is a reliable diagnostic and prognostic marker for UC, with potential clinical implementation.

    Ort, förlag, år, upplaga, sidor
    Oxford University Press, 2025
    Nyckelord
    inflammatory bowel disease, ulcerative colitis, autoantibodies
    Nationell ämneskategori
    Gastroenterologi och hepatologi
    Identifikatorer
    urn:nbn:se:uu:diva-557794 (URN)10.1093/ecco-jcc/jjaf062 (DOI)001490503400004 ()40251889 (PubMedID)2-s2.0-105005769921 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 2020-02021Stiftelsen för strategisk forskning (SSF), RB13-0160NordForsk, 90569Vinnova, 2019-01185
    Tillgänglig från: 2025-06-04 Skapad: 2025-06-04 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    4. Preclinical Anti-Integrin αvβ6 Autoantibodies in Ulcerative Colitis and Colonic Crohn's disease: Early-life Emergence, Environmental Modifiers, and Co-Abundance with Inflammatory proteins in Large Population-Based Cohorts
    Öppna denna publikation i ny flik eller fönster >>Preclinical Anti-Integrin αvβ6 Autoantibodies in Ulcerative Colitis and Colonic Crohn's disease: Early-life Emergence, Environmental Modifiers, and Co-Abundance with Inflammatory proteins in Large Population-Based Cohorts
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nyckelord
    Preclinical ulcerative colitis, inflammatory bowel disease, anti-integrin αvβ6, autoantibodies, biomarkers
    Nationell ämneskategori
    Medicin och hälsovetenskap Gastroenterologi och hepatologi
    Identifikatorer
    urn:nbn:se:uu:diva-582379 (URN)
    Tillgänglig från: 2026-03-16 Skapad: 2026-03-16 Senast uppdaterad: 2026-03-20
    Ladda ner fulltext (pdf)
    UUThesis_Pertsinidou,E-2026
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  • Disputation: 2026-05-08 08:30 BMC A1:111a, Uppsala
    Gulyás, Kinga Virág
    Uppsala universitet, Teknisk-naturvetenskapliga vetenskapsområdet, Kemiska sektionen, Institutionen för kemi inom livsvetenskaperna (Kemi LV), Organisk kemi.
    Exploring phosphonic acids for metallo-β-lactamase inhibition: In search of new strategies to fight antibiotic resistance2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The Global Antibiotic Research & Development Partnership (GARDP) estimates that antibiotic resistance claims one life in every 6 seconds. It is currently associated with 5 million deaths annually, a number that continues to rise. A major challenge in combating antibiotic resistance is the emergence of metallo-β-lactamase enzymes that degrade our most used antibiotics, the β-lactams. Combination therapy, which involves administering an enzyme inhibitor alongside an existing β-lactam antibiotic, presents a viable strategy to address this issue. However, no metallo-β-lactamase inhibitors are currently available on the market, underscoring the urgent need for their development.

    This work describes the development of new phosphonic acid-based metallo-β-lactamase inhibitors and studies their binding to the target metallo-β-lactamase enzymes. Phosphorous-containing molecules are promising inhibitor candidates, which act as transition state analogues that bind to the zinc ions essential for the metallo-β-lactamase activity. The synthesis and bioactivities of three sets of phosphonic acid-type inhibitors are described. These compounds proved to be active on purified metallo-β-lactamases (micromolar to nanomolar IC50) as well as on living bacteria, they were Gram-negative membrane permeable and not cytotoxic to human cells. Their binding event was evaluated by solution NMR spectroscopy, X-ray crystallography, molecular docking and molecular dynamics studies. The key interaction between the phosphonic acid core and the enzymes’ zinc ions was determined. These findings are expected to contribute to the development of clinically applicable metallo-β-lactamase inhibitors.

    Delarbeten
    1. Dynamically chiral phosphonic acid-type metallo-β-lactamase inhibitors
    Öppna denna publikation i ny flik eller fönster >>Dynamically chiral phosphonic acid-type metallo-β-lactamase inhibitors
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    2025 (Engelska)Ingår i: Communications Chemistry, E-ISSN 2399-3669, Vol. 8, nr 1, artikel-id 119Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Antibiotic resistance is a growing global health threat that risks the lives of millions. Among the resistance mechanisms, that mediated by metallo-beta-lactamases is of particular concern as these bacterial enzymes dismantle most beta-lactam antibiotics, which are our widest applied and cheapest to produce antibiotic agents. So far, no clinically applicable metallo-beta-lactamase inhibitors are available. Aiming to adapt to structural variations, we introduce the inhibitor concept: dynamically chiral phosphonic acids. We demonstrate that they are straightforward to synthesize, penetrate bacterial membranes, inhibit the metallo-beta-lactamase enzymes NDM-1, VIM-2 and GIM-1, and are non-toxic to human cells. Mimicking the transition state of beta-lactam hydrolysis, they target the Zn ions of the metallo-beta-lactamase active site. As a unique feature, both of their stereoisomers bind metallo-beta-lactamases, which provides them unparalleled adaptability to the structural diversity of these enzymes, and may allow them to hamper bacteria's ability for resistance development.

    Ort, förlag, år, upplaga, sidor
    Springer Nature, 2025
    Nationell ämneskategori
    Mikrobiologi
    Identifikatorer
    urn:nbn:se:uu:diva-555791 (URN)10.1038/s42004-025-01510-5 (DOI)001471182500001 ()40253435 (PubMedID)2-s2.0-105003195224 (Scopus ID)
    Forskningsfinansiär
    Swedish National Infrastructure for Computing (SNIC), NAISS 2023/5-392Swedish National Infrastructure for Computing (SNIC), 2024/5-583Vetenskapsrådet, 2013-8804Vetenskapsrådet, 2024-05496
    Tillgänglig från: 2025-05-13 Skapad: 2025-05-13 Senast uppdaterad: 2026-03-18Bibliografiskt granskad
    2. Phosphonic acid inhibitors of metallo-β-lactamases
    Öppna denna publikation i ny flik eller fönster >>Phosphonic acid inhibitors of metallo-β-lactamases
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Organisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-582532 (URN)
    Tillgänglig från: 2026-03-18 Skapad: 2026-03-18 Senast uppdaterad: 2026-03-23
    3. Discovery of an α-aminophosphonic acid VIM-2 inhibitor
    Öppna denna publikation i ny flik eller fönster >>Discovery of an α-aminophosphonic acid VIM-2 inhibitor
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Organisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-582533 (URN)
    Tillgänglig från: 2026-03-18 Skapad: 2026-03-18 Senast uppdaterad: 2026-03-18
    4. Exploring α-aminophosphonic acids for metallo-β-lactamase inhibition
    Öppna denna publikation i ny flik eller fönster >>Exploring α-aminophosphonic acids for metallo-β-lactamase inhibition
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Organisk kemi
    Identifikatorer
    urn:nbn:se:uu:diva-582534 (URN)
    Tillgänglig från: 2026-03-18 Skapad: 2026-03-18 Senast uppdaterad: 2026-03-18
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    UUThesis_Gulyás,K-2026
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  • Disputation: 2026-05-08 09:15 Room IX, University Main Building, Uppsala
    Jónsdóttir, Lilja K.
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Samhällsvetenskapliga fakulteten, Institutionen för psykologi. Uppsala universitet, WoMHeR (Centre for Women's Mental Health during the Reproductive Lifespan).
    Exploring the Self-Regulation Universe: Developmental Dynamics from Early Caregiving to Brain and Behaviour2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Childhood self-regulation, the ability to modulate behaviour, cognition, and emotion in service of adaptive behaviour and higher-order goals, is a robust predictor of important outcomes within childhood and beyond. Despite considerable research interest, the developmental pathways through which self-regulatory abilities emerge, interact, and relate to later outcomes are not fully understood. This thesis examines several of these pathways across three empirical studies, spanning multiple levels of analysis and developmental timepoints, with a focus on executive function (EF) and emotion regulation (ER). Study I investigated whether specific aspects of the early caregiving environment (maternal sensitivity and attachment security) predict self-regulation at age 6, and whether hot and cool EF in toddlerhood mediates these relationships. Contrary to hypotheses, no longitudinal associations were observed, raising important questions about whether the relationship between early caregiving and later self-regulation is more conditional, non-linear, or measurement-dependent than current models suggest. Study II examined whether inhibitory control in toddlerhood predicts internalizing and externalizing problems at age 9–10, and whether ER at age 6 mediates these pathways. No significant associations were found between early inhibitory control and later ER or internalizing or externalizing problems. However, general ER at age 6 predicted lower levels of both internalizing and externalizing problems, highlighting ER as a transdiagnostic, potentially modifiable factor in the development of childhood psychopathology. Study III examined developmental differences in choline concentration in the dorsal anterior cingulate cortex (dACC), a region implicated in error monitoring, action selection, and cognitive control, and its associations with cognitive control performance across children, adolescents, and adults. The association between dACC choline and cognitive control reversed direction across developmental stages (negative in children and positive in adults), suggesting that the neurobiological significance of this metabolite shifts fundamentally with development.Taken together, these findings reflect the conceptual and methodological complexity of studying self-regulation across development. While self-regulation remains a meaningful predictor of socioemotional outcomes, and neurobiological measures may offer meaningful insights into the development of cognitive control, transparent reporting of null findings reporting and continued refinement of theoretical and measurement approaches are necessary for advancing a cumulative science of self-regulation development.

    Delarbeten
    1. A challenge to the expected: Lack of longitudinal associations between the early caregiving environment, executive functions in toddlerhood, and self-regulation at 6 years
    Öppna denna publikation i ny flik eller fönster >>A challenge to the expected: Lack of longitudinal associations between the early caregiving environment, executive functions in toddlerhood, and self-regulation at 6 years
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    2024 (Engelska)Ingår i: Developmental Science, ISSN 1363-755X, E-ISSN 1467-7687, Vol. 27, nr 5, artikel-id e13526Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Previous research and theory indicate an importance of the quality of the early caregiving environment in the development of self-regulation. However, it is unclear how attachment security and maternal sensitivity, two related but distinct aspects of the early caregiving environment, may differentially predict self-regulation at school start and whether a distinction between hot and cool executive function is informative in characterizing such predictions through mediation. In a 5-year longitudinal study (n = 108), we examined these associations using measures of maternal sensitivity and attachment security at 10–12 months, executive function at 4 years, and self-regulation at 6 years. Surprisingly, and despite methodological rigor, we found few significant bivariate associations between the study variables. We found no credible evidence of a longitudinal association between maternal sensitivity or attachment security in infancy and self-regulation at 6 years, or between executive function at 4 years and self-regulation at 6 years. The lack of bivariate longitudinal associations precluded us from building mediation models as intended. We discuss our null findings in terms of their potential theoretical implications, as well as how measurement type, reliability, and validity, may play a key role in determining longitudinal associations between early caregiving factors and later self-regulation and related abilities.

    Ort, förlag, år, upplaga, sidor
    John Wiley & Sons, 2024
    Nyckelord
    attachment security, early caregiving environment, hot and cool executive functions, longitudinal study, maternal sensitivity, self-regulation
    Nationell ämneskategori
    Psykologi (exklusive tillämpad psykologi)
    Identifikatorer
    urn:nbn:se:uu:diva-540959 (URN)10.1111/desc.13526 (DOI)001214938400001 ()38712829 (PubMedID)
    Forskningsfinansiär
    Vetenskapsrådet, 421-2012-1222Uppsala universitet, UFV 2021/1318
    Tillgänglig från: 2024-10-25 Skapad: 2024-10-25 Senast uppdaterad: 2026-03-18Bibliografiskt granskad
    2. Examining early inhibitory control and emotion regulation as predictors of childhood internalizing and externalizing problems: A longitudinal study
    Öppna denna publikation i ny flik eller fönster >>Examining early inhibitory control and emotion regulation as predictors of childhood internalizing and externalizing problems: A longitudinal study
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    2026 (Engelska)Ingår i: JCPP Advances, E-ISSN 2692-9384, artikel-id e70093Artikel i tidskrift (Refereegranskat) Epub ahead of print
    Abstract [en]

    Background

    Identifying predictors and mechanisms in the development of childhood internalizing (INT) and externalizing (EXT) problems is crucial for early intervention. Inhibitory control has been linked to INT and EXT, with emotion regulation (ER) potentially mediating these associations. However, specific pathways between early inhibitory control, ER, and later INT and EXT remain unclear. Additionally, regulation of distinct emotions (anger, fear, sadness, joy) may play a role.

    Methods

    The sample included 94 typically developing children from the EFFECT study, a longitudinal project on the development of self-regulation. At age 4, inhibitory control was measured using the Day/Night Stroop Task. At age 6, general ER, as well as regulation of specific emotions (anger, fear, sadness, and joy), were assessed using the Emotion Questionnaire (parent-report). INT and EXT at ages 9–10 were measured using the Strengths and Difficulties Questionnaire (parent-report). Correlational and path analyses were conducted.

    Results

    No longitudinal associations were found between inhibitory control at 4 years and either INT or EXT at ages 9–10, or with ER at age 6. Consequently, we found no evidence of mediation by ER. General ER at 6 years emerged as a predictor of both INT and EXT at 9–10 years. While not statistically significant, effect sizes linking regulation of some specific emotions (anger, fear) with subsequent INT and EXT problems warrant further research.

    Conclusion

    The results reflect the complexity of studying longitudinal effects of early inhibitory control. A modest sample size with attrition, and measurement constraints may have attenuated effects and limited generalizability. Meanwhile, our findings highlight ER as a target for intervention across both INT and EXT.

    Ort, förlag, år, upplaga, sidor
    Association for Child and Adolescent Mental Health, 2026
    Nationell ämneskategori
    Psykologi (Exklusive tillämpad psykologi)
    Identifikatorer
    urn:nbn:se:uu:diva-580189 (URN)10.1002/jcv2.70093 (DOI)001655481500001 ()2-s2.0-105026914460 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 421‐2012‐1222
    Tillgänglig från: 2026-02-22 Skapad: 2026-02-22 Senast uppdaterad: 2026-03-18
    3. Choline Concentration in the Dorsal Anterior Cingulate Cortex: Developmental Patterns and Associations with Cognitive Control
    Öppna denna publikation i ny flik eller fönster >>Choline Concentration in the Dorsal Anterior Cingulate Cortex: Developmental Patterns and Associations with Cognitive Control
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Background: Cognitive control develops progressively from childhood through early adulthood, supported by protracted maturation of the dorsal anterior cingulate cortex (dACC). While structural and functional development of this region is well-characterized, the neurochemical substrates underlying its maturation remain largely unexplored. Choline, a metabolite essential for membrane synthesis, myelination, and cholinergic neurotransmission, may play a critical role in dACC development.

    Methods: We used proton magnetic resonance spectroscopy (.H-MRS) to measure choline concentration (tCho/tCr) in the dACC of 106 participants (23 children aged 6-9 years, 38 adolescents aged 13-17 years, 45 adults aged 30-40 years). Cognitive control performance was assessed using a composite measure derived from multiple cognitive control tasks. Bayesian linear regression models examined age-group differences in choline concentration and associations between choline and cognitive control performance.

    Results: Adults showed higher dACC choline concentrations than both children and adolescents, while evidence for differences between children and adolescents was inconclusive. Critically, the relationship between choline and cognitive control performance showed a developmental shift; the association was negative in children, inconclusive in adolescents, and positive in adults, with strong evidence of a difference between children and adults.

    Conclusions: These findings suggest a developmental change in the functional significance of dACC choline concentration, potentially reflecting a shift from supporting active circuit reorganization in childhood to maintaining established networks in adulthood. The cross-sectional design limits causal inference, and we emphasise the need for replication given the modest sample size. Meanwhile, this study provides the first characterization of dACC choline concentration across development, and indicates that a single biomarker may carry different functional significance at different developmental stages.

    Nationell ämneskategori
    Neurovetenskaper Psykologi (Exklusive tillämpad psykologi)
    Forskningsämne
    Psykologi
    Identifikatorer
    urn:nbn:se:uu:diva-582531 (URN)
    Tillgänglig från: 2026-03-18 Skapad: 2026-03-18 Senast uppdaterad: 2026-03-25Bibliografiskt granskad
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    UUThesis_Jónsdóttir,L-2026
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  • Disputation: 2026-05-08 09:15 A1:107a, Uppsala
    Stelzl, Christina
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för medicinsk cellbiologi.
    Applications of Additive Manufacturing for Advancing Cell Models from 2D to 3D2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Two-dimensional (2D) cell culture systems are widely used in preclinical research due to their ease of handling and standardisation, but do not adequately reflect key aspects of the complex three-dimensional (3D) physiological microenvironment. This limits the predictive value of in vitro studies for both drug development and biomaterials research. The overall aim of this thesis was to explore how additive manufacturing supports the transition from 2D to more advanced 3D cell culture models.

    In Study I, CombiCTx, a cell culture device for combinatorial anti-cancer drug testing, was developed. The system enables the formation of overlapping drug gradients through diffusion in a hydrogel matrix, and an assay and imaging analysis protocol was established. Using breast cancer cells, it was demonstrated that the assay can identify synergistic drug effects and that, for the drugs tested, these effects were spatially confined to specific regions of the assay space, highlighting the importance of diffusion processes not captured in standard 2D assays.

    In Study II, an open source extrusion-based bioprinter based on the E3D motion system was established to increase accessibility to bioprinting technologies. The system supports multimaterial printing and FRESH bioprinting. Collagen scaffolds and cell-laden laminin-containing constructs were printed, and high cell viability was maintained, demonstrating the suitability of the platform for generating 3D cell culture environments.

    Studies III and IV focused on biomaterials for bone regeneration. In Study III, the biosafety of a phosphoserine (pSER)-modified calcium phosphate bone adhesive was evaluated. Both in vitro and in vivo results indicated good biocompatibility, with no evidence of adverse immune reactions or ectopic bone formation.

    In Study IV, 3D bioprinted collagen-silica hybrid scaffolds modified with pSER were investigated. In vitro experiments showed a dose-dependent effect of pSER in combination with calcium phosphate on cell viability. In vivo, mineralised scaffolds promoted bone formation, suggesting an osteogenic potential of these materials.

    In conclusion, the studies presented in this thesis demonstrate that additive manufacturing can be used to develop more advanced in vitro models and to investigate biomaterials in controlled 3D environments. These approaches will contribute to improving the translation of preclinical findings into clinical applications.

    Delarbeten
    1. CombiCTx: screening diffusion gradients of anti-cancer drug combinations
    Öppna denna publikation i ny flik eller fönster >>CombiCTx: screening diffusion gradients of anti-cancer drug combinations
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    2026 (Engelska)Ingår i: Lab on a Chip, ISSN 1473-0197, E-ISSN 1473-0189, Vol. 26, nr 3, s. 695-710Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    The reduced effectiveness of chemotherapy in many patients undergoing treatment highlights the need for novel drug combinations that target drug resistance mechanisms contributing to tumor survival. Dynamic conditions within the tumor microenvironment influence the response to anti-cancer drugs. Accordingly, identifying effective drug concentrations and interactions (additive, synergistic, or antagonistic) in relevant tumor tissue models will inform new treatment combinations. To address this need for combinatorial chemotherapeutic (CTx) screening assays, we have developed a new assay called CombiCTx, which uses a device with three reservoirs containing gels loaded with anti-cancer drugs. The drug-loaded device is inverted and placed in a standard culture dish above cancer cells, and both are then enclosed in gel. Drugs diffuse from the reservoirs and expose cancer cells to overlapping dynamic drug gradients. We imaged diffusion of the anti-cancer drug doxorubicin in the assay using time-lapse microscopy, and established an imaging protocol for quantifying MDA-MB-231 breast cancer cell survival responses along drug gradients. Finally, evaluating combination effects of navitoclax and gemcitabine with CombiCTx revealed localized effects of navitoclax, attributed to limited diffusion, while gemcitabine seemed to diffuse readily throughout the assay and revealed a mild synergy in navitoclax affected regions. These data demonstrate the capacity of CombiCTx to evaluate the cytotoxic effects of anti-cancer drug combinations while accounting for drug diffusion differences, which is relevant in the context of the 3D tumor environment and may thereby help inform clinical treatment strategies.

    Ort, förlag, år, upplaga, sidor
    Royal Society of Chemistry, 2026
    Nationell ämneskategori
    Basal cancerforskning
    Identifikatorer
    urn:nbn:se:uu:diva-581630 (URN)10.1039/d5lc00686d (DOI)001662214100001 ()2-s2.0-105027324592 (Scopus ID)
    Forskningsfinansiär
    Vinnova, 2019-00029Cancerfonden, 20 1285 PjFCancerfonden, 23 2692 Pj 01 HCancerfonden, 23 2776 PCancerfonden, CAN 24 3519 Pj 01 HSvenska Sällskapet för Medicinsk Forskning (SSMF), S17-0092Vetenskapsrådet, 2020-02367Vetenskapsrådet, 2024-03166Vetenskapsrådet, 2021-01628
    Tillgänglig från: 2026-03-06 Skapad: 2026-03-06 Senast uppdaterad: 2026-03-30Bibliografiskt granskad
    2. An open source extrusion bioprinter based on the E3D motion system and tool changer to enable FRESH and multimaterial bioprinting
    Öppna denna publikation i ny flik eller fönster >>An open source extrusion bioprinter based on the E3D motion system and tool changer to enable FRESH and multimaterial bioprinting
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    2021 (Engelska)Ingår i: Scientific Reports, E-ISSN 2045-2322, Vol. 11, nr 1, artikel-id 21547Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Bioprinting is increasingly used to create complex tissue constructs for an array of research applications, and there are also increasing efforts to print tissues for transplantation. Bioprinting may also prove valuable in the context of drug screening for personalized medicine for treatment of diseases such as cancer. However, the rapidly expanding bioprinting research field is currently limited by access to bioprinters. To increase the availability of bioprinting technologies we present here an open source extrusion bioprinter based on the E3D motion system and tool changer to enable high-resolution multimaterial bioprinting. As proof of concept, the bioprinter is used to create collagen constructs using freeform reversible embedding of suspended hydrogels (FRESH) methodology, as well as multimaterial constructs composed of distinct sections of laminin and collagen. Data is presented demonstrating that the bioprinted constructs support growth of cells either seeded onto printed constructs or included in the bioink prior to bioprinting. This open source bioprinter is easily adapted for different bioprinting applications, and additional tools can be incorporated to increase the capabilities of the system.

    Ort, förlag, år, upplaga, sidor
    Springer NatureSpringer Nature, 2021
    Nationell ämneskategori
    Biomaterialvetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-459007 (URN)10.1038/s41598-021-00931-1 (DOI)000714415600079 ()34732783 (PubMedID)
    Forskningsfinansiär
    Cancerfonden, 20 1285 PjF
    Tillgänglig från: 2021-11-26 Skapad: 2021-11-26 Senast uppdaterad: 2026-03-18Bibliografiskt granskad
    3. In vivo safety assessment of a bio-inspired bone adhesive
    Öppna denna publikation i ny flik eller fönster >>In vivo safety assessment of a bio-inspired bone adhesive
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    2020 (Engelska)Ingår i: Journal of materials science. Materials in medicine, ISSN 0957-4530, E-ISSN 1573-4838, Vol. 31, nr 2, artikel-id 24Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    A new class of materials, bone adhesives, could revolutionise the treatment of highly fragmented fractures. We present the first biological safety investigation of a bio-inspired bone adhesive. The formulation was based upon a modified calcium phosphate cement that included the amino acid phosphoserine. This material has recently been described as substantially stronger than other bioresorbable calcium phosphate cements. Four adhesive groups with the active substance (phosphoserine) and two control groups without phosphoserine were selected for in vitro and in vivo biocompatibility testing. The test groups were subject for cell viability assay and subcutaneous implantation in rats that was followed by gene expression analysis and histology assessment after 6 and 12 weeks. All adhesive groups supported the same rate of cell proliferation compared to the alpha-TCP control and had viability between 45-64% when compared to cell control. There was no evidence of an increased immune response or ectopic bone formation in vivo. To conclude, this bio-inspired bone adhesive has been proven to be safe, in the present study, without any harmful effects on the surrounding soft tissue. 

    Ort, förlag, år, upplaga, sidor
    SPRINGER, 2020
    Nationell ämneskategori
    Medicinsk materialteknik
    Identifikatorer
    urn:nbn:se:uu:diva-407133 (URN)10.1007/s10856-020-6362-3 (DOI)000511787900001 ()32036502 (PubMedID)
    Forskningsfinansiär
    Vetenskapsrådet, RMA15-390 0110
    Anmärkning

    De två första författarna delar förstaförfattarskapet.

    Tillgänglig från: 2020-03-20 Skapad: 2020-03-20 Senast uppdaterad: 2026-03-18Bibliografiskt granskad
    4. Phosphoserine enriched dense collagen bioink
    Öppna denna publikation i ny flik eller fönster >>Phosphoserine enriched dense collagen bioink
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    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Phosphoserine (pSER) is a phosphorylated amino acid commonly found in non-collagenous bone proteins and is implicated in the regulation of calcium phosphate (CaP) mineral formation and interfacial interactions in native bone. Here, we soaked 3D printed collagen scaffolds, with or without prior mineralisation, in pSER and investigated the early cellular response by assessing pre-osteoblast viability through ATP content measurements at day 3. The scaffolds were further evaluated in a rat uni-cortical femoral defect model and analysed by micro-computed tomography (µCT) and histology after 6 weeks. In parallel, standard 2D cultures of MC3T3-E1 cells and rat mesenchymal stromal cells (rMSCs) were exposed to pSER, nanohydroxyapatite (nHA), or a combination of both to assess dose-dependent effects in the absence of a scaffold environment. Using a dose-dependent screening approach, we identified 0.05% pSER on mineralised collagen scaffolds as the concentration that resulted in the highest cell viability, whereas higher concentrations were cytotoxic. This concentration was further evaluated in a time-dependent setup over 7 days and again showed increased cell viability compared to untreated collagen scaffolds. Similar trends were observed in vivo where CaP-containing groups demonstrated a higher bone volume fraction than CaP-free collagen groups, and pSER-associated effects were detectable but less pronounced. Overall, the results indicate that collagen scaffolds combining pSER and CaP lead to a dose-dependent enhanced pre-osteoblast viability in vitro. Future work will explore how these pSER-modified collagen bioinks influence bone cell differentiation and aim to elucidate the mechanisms through which pSER supports bone regeneration in vivo. 

    Nationell ämneskategori
    Biomaterialvetenskap
    Forskningsämne
    Medicinsk vetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-582588 (URN)
    Tillgänglig från: 2026-03-18 Skapad: 2026-03-18 Senast uppdaterad: 2026-03-18
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    UUThesis_Stelzl,C-2026
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  • Disputation: 2026-05-08 13:00 H:son Holmdahlsalen, Uppsala
    Mälberg, Johan
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för kirurgiska vetenskaper, Anestesiologi och intensivvård.
    Exploring ventilation during cardiopulmonary resuscitation: Experimental and clinical insights2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    Ventilation during cardiopulmonary resuscitation remains understudied with current guideline recommendations for the treatment relying on low level evidence and expert opinion. The aim of this doctoral project was to explore ventilation during cardiopulmonary resuscitation, both in the experimental and clinical setting.

    Study I investigated whether a suction cup on a mechanical chest compression device intended to assist chest recoil affected the haemodynamics and ventilation in an experimental porcine model. No difference in EtCO2, as a measurement of cardiac output, or ventilation could be found, although the suction cup increased the coronary perfusion pressure.

    In study II, ventilation parameters, haemodynamics, blood gases and lung injuries were compared between ventilation during continuous chest compressions and ventilations given during a pause of the chest compressions (30:2) in an experimental porcine model. Continuous chest compressions were associated with higher peak inspiratory pressure, lower EtCO2 and PaCO2. No differences were found with regards to lung injuries between the groups.

    Study III aimed to develop and test a novel algorithm designed to extract accurate ventilation parameters from ventilation waveform signals, gathered during experimental CPR, in the presence of chest compression artefacts in the signal, that otherwise interferes with the parameter extraction. The algorithm was tested with a pneumotacography device and with mechanical ventilators giving ventilation parameters with known values. The algorithm deviated only slightly from the ventilator settings and outperformed the standard software of the pneumotachograph.

    Study IV was an observational multicentre study that aimed to describe ventilation parameters during cardiopulmonary resuscitation. Patients were included from five sites, four out of hospital and one in hospital. Included in the study were 241 patients and 28120 ventilations. The ventilations were heterogenous and varied with airway modality and ventilation mode. Bag-valve-mask ventilations were associated with large levels of leakage and asynchronous ventilations with endotracheal tubes with high airway pressures. No obvious signs of hyperventilation were found.

    Future research on cardiopulmonary resuscitation should when possible include measurements of ventilation, in order to deduce if the varying ventilation parameters affects outcomes and to decide optimal ventilation strategies for survival.

    Delarbeten
    1. Suction cup on a piston-based chest compression device improves coronary perfusion pressure and cerebral oxygenation during experimental cardiopulmonary resuscitation
    Öppna denna publikation i ny flik eller fönster >>Suction cup on a piston-based chest compression device improves coronary perfusion pressure and cerebral oxygenation during experimental cardiopulmonary resuscitation
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    2022 (Engelska)Ingår i: Resuscitation Plus, E-ISSN 2666-5204, Vol. 12, artikel-id 100311Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Introduction: The presented study aimed to investigate whether a mechanical chest compression piston device with a suction cup assisting chest recoil could impact the hemodynamic status when compared to a bare piston during cardiopulmonary resuscitation.

    Methods: 16 piglets were anesthetized and randomized into 2 groups. After 3 minutes of induced ventricular fibrillation, a LUCAS 3 device was used to perform chest compressions, in one group a suction cup was mounted on the device's piston, while in the other group, compressions were per -formed by the bare piston. The device was used in 30:2 mode and the animals were manually ventilated. Endpoints of the study were: end tidal carbon dioxide, coronary and cerebral perfusion pressures, and brain oxygenation (measured using near infrared spectroscopy). At the end of the protocol, the animals that got a return to spontaneous circulation were observed for 60 minutes, then euthanized.

    Results: No difference was found in end tidal carbon dioxide or tidal volumes. Coronary perfusion pressure and cerebral oxygenation were higher in the Suction cup group over the entire experiment time, while cerebral perfusion pressure was higher only in the last 5 minutes of CPR. A passive tidal volume (air going in and out the airways during compressions) was detected and found correlated to end tidal carbon dioxide.

    Conclusions: The use of a suction cup on a piston-based chest compression device did not increase end tidal carbon dioxide, but it was associated to a higher coronary perfusion pressure.

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2022
    Nyckelord
    Mechanical chest compression, Coronary perfusion pressure, Cerebral oxygenation, suction cup, Piston-based device
    Nationell ämneskategori
    Anestesi och intensivvård
    Identifikatorer
    urn:nbn:se:uu:diva-487295 (URN)10.1016/j.resplu.2022.100311 (DOI)000868311000003 ()36193235 (PubMedID)
    Forskningsfinansiär
    Uppsala universitet
    Tillgänglig från: 2022-10-28 Skapad: 2022-10-28 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    2. Continuous chest compressions are associated with higher peak inspiratory pressures when compared to 30:2 in an experimental cardiac arrest model
    Öppna denna publikation i ny flik eller fönster >>Continuous chest compressions are associated with higher peak inspiratory pressures when compared to 30:2 in an experimental cardiac arrest model
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    2023 (Engelska)Ingår i: Intensive Care Medicine Experimental, E-ISSN 2197-425X, Vol. 11, nr 1, artikel-id 75Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    BACKGROUND: Ventilation during cardiopulmonary resuscitation (CPR) has long been a part of the standard treatment during cardiac arrests. Ventilation is usually given either during continuous chest compressions (CCC) or during a short pause after every 30 chest compressions (30:2). There is limited knowledge of how ventilation is delivered if it effects the hemodynamics and if it plays a role in the occurrence of lung injuries. The aim of this study was to compare ventilation parameters, hemodynamics, blood gases and lung injuries during experimental CPR given with CCC and 30:2 in a porcine model.

    METHODS: Sixteen pigs weighing approximately 33 kg were randomized to either receive CPR with CCC or 30:2. Ventricular fibrillation was induced by passing an electrical current through the heart. CPR was started after 3 min and given for 20 min. Chest compressions were provided mechanically with a chest compression device and ventilations were delivered manually with a self-inflating bag and 12 l/min of oxygen. During the experiment, ventilation parameters and hemodynamics were sampled continuously, and arterial blood gases were taken every five minutes. After euthanasia and cessation of CPR, the lungs and heart were removed in block and visually examined followed by sampling of lung tissue which were examined using microscopy.

    RESULTS: In the CCC group and the 30:2 group, peak inspiratory pressure (PIP) was 58.6 and 35.1 cmH2O (p < 0.001), minute volume (MV) 2189.6 and 1267.1 ml (p < 0.001), peak expired carbon dioxide (PECO2) 28.6 and 39.4 mmHg (p = 0.020), partial pressure of carbon dioxide (PaCO2) 50.2 and 61.1 mmHg (p = 0.013) and pH 7.3 and 7.2 (p = 0.029), respectively. Central venous pressure (CVP) decreased more over time in the 30:2 group (p = 0.023). All lungs were injured, but there were no differences between the groups.

    CONCLUSIONS: Ventilation during CCC resulted in a higher PIP, MV and pH and lower PECO2 and PaCO2, showing that ventilation mode during CPR can affect ventilation parameters and blood gases.

    Ort, förlag, år, upplaga, sidor
    Springer, 2023
    Nyckelord
    Animal model, Cardiac arrest, Cardiopulmonary resuscitation, Lung injuries, Ventilation
    Nationell ämneskategori
    Kardiologi och kardiovaskulära sjukdomar Anestesi och intensivvård
    Identifikatorer
    urn:nbn:se:uu:diva-515832 (URN)10.1186/s40635-023-00559-7 (DOI)001101873200001 ()37938394 (PubMedID)
    Forskningsfinansiär
    Uppsala universitet
    Tillgänglig från: 2023-11-13 Skapad: 2023-11-13 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    3. A novel algorithm to determine ventilation parameters during cardiopulmonary resuscitation using pneumotachography waveform data
    Öppna denna publikation i ny flik eller fönster >>A novel algorithm to determine ventilation parameters during cardiopulmonary resuscitation using pneumotachography waveform data
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    2026 (Engelska)Ingår i: Resuscitation Plus, E-ISSN 2666-5204, Vol. 28, artikel-id 101238Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background

    A major barrier to the analysis of ventilation waveform data collected during CPR is the presence of artefacts caused by chest compressions. This study describes the development and evaluation of an algorithm to extract parameters regarding ventilation volume, pressure, and frequency from pneumotachography waveform data collected during ongoing simulated CPR.

    Method

    Ventilation waveform data was collected from a pneumotachograph connected to the respiratory circuit of a ventilator and a test lung. Both regular ventilation and ventilation during simulated CPR were used to develop the algorithm. A grid search was employed to optimize the algorithm parameters compared to the ventilator settings. The parameters were then manually tuned using clinical data from ventilation during CPR. The performance of the algorithm was described in terms of the median error vs. the known ventilator settings in the simulated data.

    Results

    Compared to the ventilator settings, the largest systematic errors of the algorithm was an overestimation of peak pressures during asynchronous CPR (median error of 3 (IQR 0.3–5.8) cmH2O), and an underestimation of inspiratory volumes during synchronous CPR (median error 46 (IQR −76 to 10) ml).

    Conclusion

    In an experimental setting, the developed algorithm provides a novel solution to measure ventilation parameters during ongoing chest compressions. The algorithm is freely available under an open-source licence for use and further development. Further studies will be needed to validate the algorithm.

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2026
    Nationell ämneskategori
    Anestesi och intensivvård
    Forskningsämne
    Medicinsk vetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-581580 (URN)10.1016/j.resplu.2026.101238 (DOI)001683628700001 ()41674708 (PubMedID)2-s2.0-105029311455 (Scopus ID)
    Tillgänglig från: 2026-03-05 Skapad: 2026-03-05 Senast uppdaterad: 2026-03-16Bibliografiskt granskad
    4. CAvent: A Multicenter Observational Study on Manual Ventilation Parameters During Advanced Life Support in Cardiac Arrest
    Öppna denna publikation i ny flik eller fönster >>CAvent: A Multicenter Observational Study on Manual Ventilation Parameters During Advanced Life Support in Cardiac Arrest
    Visa övriga...
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    Background

    Despite the critical role of ventilation in cardiopulmonary resuscitation, scientific understanding of manual ventilation parameters during cardiac arrest is limited, with current cardiopulmonary resuscitation guidelines largely based on expert opinion rather than robust clinical evidence. The aim of this study was to present an extensive description of ventilation during cardiopulmonary resuscitation and ventilation parameters such as volume, pressure and frequency and compare them across different ventilation modes and airway modalities.

    Methods

    The Cardiac Arrest ventilation study (CAvent) was a multicenter, observational cohort study conducted in both nurse- and physician-staffed advanced life support settings. Key ventilation parameters—such as pressure, volume, and frequency—were captured using a portable pneumotachograph and capnography device. 

    Results

    The analysis included 28120 ventilations across 311 separate ventilation periods in 241 individual patients, of which 134 received asynchronous ventilations, 86 synchronous and 21 a mix of both. Endotracheal tube was the most frequently used airway modality, used in 58% of the cases. In asynchronous and synchronous ventilation, inspiratory tidal volume, expiratory tidal volume, peak inspiratory pressure and ventilation frequency [DS1] [DS2] was 407 vs. 423 ml, 384 vs. 356 ml, 48.1 vs. 32. 4 and 11.2 vs 5.0 respectively. Bag-valve-mask had the lowest effective lung ventilation and endotracheal tube during asynchronous ventilation had the highest peak inspiratory pressure.

    Conclusion

    ALS-provided manual ventilation during CPR varies greatly across ventilation modes and airway modalities. The ventilation frequency was higher in asynchronous ventilation while inspiratory tidal volumes did not differ between ventilation modes or modalities. Asynchronous ventilation with an endotracheal tube resulted in the highest peak inspiratory pressure and Bag-valve-mask ventilations in the lowest effective lung ventilation. 

    Nationell ämneskategori
    Anestesi och intensivvård
    Forskningsämne
    Medicinsk vetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-581627 (URN)
    Tillgänglig från: 2026-03-06 Skapad: 2026-03-06 Senast uppdaterad: 2026-03-16
    Ladda ner fulltext (pdf)
    UUThesis_Mälberg,J-2026
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    presentationsbild
  • Disputation: 2026-05-08 13:00 Rudbecksalen, Rudbecklaboratoriet, Uppsala
    Stockgard, Rebecka
    Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för immunologi, genetik och patologi, Neuroonkologi och neurodegeneration.
    Invasion and Cellular Plasticity in Glioblastoma: From Regulators to Functional Models2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The adult brain tumor glioblastoma is characterized by extensive heterogeneity and invasion, with intertumoral and intratumoral variation. This heterogeneity is partly driven by cellular plasticity, which permits glioblastoma cells to transition between cellular states. The plastic cells invade the brain, commonly via perivascular spaces, and diffuse invasion into the white matter, termed invasion routes. In this thesis, we investigate whether cellular states influence invasion routes using patient-derived models and develop new tools for real-time monitoring of glioblastoma across models. 

    In Paper I, we connect cellular states to invasion routes by characterizing six patient-derived cell culture and xenograft models using single-cell RNA profiling and spatial proteomics. We connect bulk-forming capacity and perivascular invasion to MES-like and OPC-like cells, driven by ANXA1. NPC-like and AC-like cells, we link to diffuse invasion, driven by HOPX and RFX4. Perturbation of these genes shifts cellular state composition and invasion routes, suggesting that cellular state shapes invasion.

    To directly monitor cellular states, paper II introduces the CRISPR-tag, which we use to fluorescently label genes representative of cellular states in patient-derived cells. In vitro, we observe differences and oscillations in protein levels. Ex vivo, we monitor CRISPR-tagged cells and detect spatially-dependent expression of cellular-state markers. During differentiation treatment, SOX2 expression remains high outside the tumor core, whereas it is lost in the central tumor regions. ANXA1-expressing cells display higher expression closer to a vessel. We performed a whole-genome knock-out screen to identify genetic dependencies that increase or decrease ANXA1 expression and identified several candidate genes that regulate ANXA1 expression.

    Finally, in Paper III, we characterize eleven patient-derived cell cultures in a zebrafish model and monitor tumor initiation and growth using AI. The freely swimming fish are automatically imaged every four to six hours and display heterogeneity in growth and survival. Further characterization using light-sheet imaging revealed intratumoral variability in bulk-forming ability, tumor spread, and the presence of cells near vessels.

    Together, our findings suggest an association between cellular states and invasion routes and introduce new tools to monitor cellular plasticity and tumor growth.

    Delarbeten
    1. The invasion phenotypes of glioblastoma depend on plastic and reprogrammable cell states
    Öppna denna publikation i ny flik eller fönster >>The invasion phenotypes of glioblastoma depend on plastic and reprogrammable cell states
    Visa övriga...
    2025 (Engelska)Ingår i: Nature Communications, E-ISSN 2041-1723, Vol. 16, nr 1, artikel-id 6662Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Glioblastoma (GBM) is the most common primary brain cancer. It causes death mainly by local invasion via several routes, including infiltration of white matter tracts and penetration of perivascular spaces. However, the pathways that mediate these invasion routes are only partly known. Here, we conduct an integrative study to identify cell states and central drivers of route-specific invasion in GBM. Combining single-cell profiling and spatial protein detection in patient-derived xenograft models and clinical tumor samples, we demonstrate a close association between the differentiation state of GBM cells and their choice of invasion route. Computational modeling identifies ANXA1 as a driver of perivascular involvement in GBM cells with mesenchymal differentiation and the transcription factors RFX4 and HOPX as orchestrators of growth and differentiation in diffusely invading GBM cells. Ablation of these targets in tumor cells alters their invasion route, redistributes the cell states, and extends survival in xenografted mice. Our results define a close association between GBM cell differentiation states and invasion routes, identify functional biomarkers of route-specific invasion, and point toward targeted modulation of specific invasive cell states as a therapeutic strategy in GBM.

    Ort, förlag, år, upplaga, sidor
    Springer Nature, 2025
    Nationell ämneskategori
    Cancer och onkologi
    Identifikatorer
    urn:nbn:se:uu:diva-566558 (URN)10.1038/s41467-025-61999-1 (DOI)001533513900021 ()40683881 (PubMedID)2-s2.0-105011165835 (Scopus ID)
    Forskningsfinansiär
    Vetenskapsrådet, 2021-03224Knut och Alice Wallenbergs Stiftelse, 2022-0057Stiftelsen för strategisk forskning (SSF), CCS23-011Cancerfonden, 20 0839 PjF
    Tillgänglig från: 2025-09-05 Skapad: 2025-09-05 Senast uppdaterad: 2026-03-12Bibliografiskt granskad
    2. CRISPR-tag enables real-time mapping and perturbation of cell-state plasticity in glioblastoma
    Öppna denna publikation i ny flik eller fönster >>CRISPR-tag enables real-time mapping and perturbation of cell-state plasticity in glioblastoma
    Visa övriga...
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Abstract [en]

    The brain tumor glioblastoma is characterized by extensive tumor cell plasticity, a property increasingly recognized as a therapeutic vulnerability. However, our ability to monitor plastic changes in living cells remains limited, hindering efforts to identify the genetic dependencies that govern state changes. Here, we present CRISPR-tag, a method for endogenously tagging cell-state proteins, enabling real-time, single-cell monitoring of GB state dynamics in vitro and ex vivo. Guided by integrative transcriptomic analysis, we generated a panel of fluorescent reporters capturing the major axes of GB cellular variation. These reporters reveal diverse phenomena, including oscillatory expression, lineage-coupled state inheritance, and spatially dependent drug responses in explant assays. Leveraging CRISPR-tag with genome-wide perturbations, we identify regulators of cellular states. Together, CRISPR-tag establishes a scalable platform for resolving and causally perturbing cell state trajectories in glioblastoma, providing a basis for the mechanistic analysis of tumor plasticity and the development of state-targeted therapies.

    Nyckelord
    Cellular States, Plasticity, CRISPR, Endogenous protein tagging
    Nationell ämneskategori
    Cancer och onkologi Cell- och molekylärbiologi
    Identifikatorer
    urn:nbn:se:uu:diva-582039 (URN)
    Tillgänglig från: 2026-03-12 Skapad: 2026-03-12 Senast uppdaterad: 2026-03-12
    3. Real-time evaluation of glioblastoma growth in patient-specific zebrafish xenografts
    Öppna denna publikation i ny flik eller fönster >>Real-time evaluation of glioblastoma growth in patient-specific zebrafish xenografts
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    2021 (Engelska)Ingår i: Neuro-Oncology, ISSN 1522-8517, E-ISSN 1523-5866, Vol. 24, nr 5, s. 726-738Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background: Patient-derived xenograft (PDX) models of glioblastoma (GBM) are a central tool for neuro-oncology research and drug development, enabling the detection of patient-specific differences in growth, and in vivo drug response. However, existing PDX models are not well suited for large-scale or automated studies. Thus, here, we investigate if a fast zebrafish-based PDX model, supported by longitudinal, AI-driven image analysis, can recapitulate key aspects of glioblastoma growth and enable case-comparative drug testing.

    Methods: We engrafted 11 GFP-tagged patient-derived GBM IDH wild-type cell cultures (PDCs) into 1-day-old zebrafish embryos, and monitored fish with 96-well live microscopy and convolutional neural network analysis. Using light-sheet imaging of whole embryos, we analyzed further the invasive growth of tumor cells.

    Results: Our pipeline enables automatic and robust longitudinal observation of tumor growth and survival of individual fish. The 11 PDCs expressed growth, invasion and survival heterogeneity, and tumor initiation correlated strongly with matched mouse PDX counterparts (Spearman R = 0.89, p < 0.001). Three PDCs showed a high degree of association between grafted tumor cells and host blood vessels, suggesting a perivascular invasion phenotype. In vivo evaluation of the drug marizomib, currently in clinical trials for GBM, showed an effect on fish survival corresponding to PDC in vitro and in vivo marizomib sensitivity.

    Conclusions: Zebrafish xenografts of GBM, monitored by AI methods in an automated process, present a scalable alternative to mouse xenograft models for the study of glioblastoma tumor initiation, growth, and invasion, applicable to patient-specific drug evaluation.

    Ort, förlag, år, upplaga, sidor
    Oxford University PressOxford University Press (OUP), 2021
    Nationell ämneskategori
    Cancer och onkologi Annan medicinsk bioteknologi
    Identifikatorer
    urn:nbn:se:uu:diva-402416 (URN)10.1093/neuonc/noab264 (DOI)000764882800001 ()34919147 (PubMedID)
    Tillgänglig från: 2020-01-16 Skapad: 2020-01-16 Senast uppdaterad: 2026-03-12Bibliografiskt granskad
    Ladda ner fulltext (pdf)
    UUThesis_Stockgard,R-2026
    Ladda ner (jpg)
    presentationsbild
  • Disputation: 2026-05-08 13:00 A1:111:a, Uppsala
    Wilandh, Emma
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Samhällsvetenskapliga fakulteten, Institutionen för kostvetenskap.
    Hospital food and meal provision: advancing knowledge toward improvement2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    The overall aim of this thesis was to advance the knowledge of food and meal provision for hospital inpatients, with particular emphasis on organisation and practices, as well as associated improvement initiatives. Paper I, a scoping review, summarised two decades of research on improving hospital foodservices. Using a modified version of the model Linked Aims of Improvement, most of the aspects identified fell within the System Performance and Patient Outcomes domains, while fewer addressed Professional Development or Leadership, revealing research gaps. The studies in Papers II and III explored initiatives in Swedish hospitals using qualitative semi-structured interviews with 18 nutrition leaders. The interviews were audio-recorded, transcribed and analysed thematically. Paper II showed that a wide range of facilitation activities supported change, but challenges persisted, particularly the low priority given to hospital food and meals and limited collaboration across the organisation. Three themes were formed: Building Relationships, Placing Food and Meals on the Agenda, and Cultivating Skills. Paper III, drawing on the same interviews, highlights core values for food and meal improvement across four dimensions of mealtime care: Flexible, Hospitable, Quality Management, and Nutritional Mealtime Care. These values reflected both established practices and emergent approaches, from individual-level actions to broader systemic strategies. The study in Paper IV involved the translation, cultural adaptation, and validation of an Australian questionnaire for use in the Swedish context. The adapted tool captures the perspectives of hospital ward staff on nutrition and mealtime care across four factors: Foodservices to patients, Staff roles in various mealtime activities, Family involvement in mealtimes, and Organisational support for mealtime care. After an expert review, the original 17 items were increased to 19 in the Swedish version (SWEMEAL) after splitting two items. Despite high content validity and test-retest reliability, weak model validity indicates the need for further tool development. In conclusion, food and meal improvement relies on collaboration, leadership, and continuous feedback, which is valuable knowledge that can guide future efforts.

    Delarbeten
    1. Better hospital foodservice – aspects highlighted in research published 2000–2023: A scoping review
    Öppna denna publikation i ny flik eller fönster >>Better hospital foodservice – aspects highlighted in research published 2000–2023: A scoping review
    2024 (Engelska)Ingår i: Clinical Nutrition Open Science, E-ISSN 2667-2685, Vol. 54, s. 1-40Artikel, forskningsöversikt (Refereegranskat) Published
    Abstract [en]

    Background & Aim

    Various initiatives have been taken and recommended to improve foodservice and nutritional care to hospitals patients. However, a broad description and analysis of what has been done to reach a better foodservice is lacking. Consequently, the aim of this paper is to map aspects highlighted as important in scientific articles pertaining to the improvement of foodservice for hospital inpatients.

    Methods

    A scoping review was conducted, including literature searches in four databases (CINAHL, PubMed, Scopus, Web of Science) and an article selection process. Included studies were peer reviewed primary research written in English, published in 2000–2023, focusing on quality and improvement work in organisations and practice concerning provision of food and meals to hospital inpatients. Besides data charting of article characteristics, data were obtained for qualitative synthesis.

    Results

    Out of the 103 included articles, almost all (n=102) contained aspects associated with systems of different kinds. Foremost were systems for ordering, production, delivery and menus. Additionally, there were systems for structures, evaluation, and control. Other frequently occurring aspects concerned patients (n=84), e.g. considering their nutritional requirements, preferences, and cultural habits, as well as empowering patients with freedom of choice, information and guidance. Aspects concerning professional development, e.g. training, competence and teamwork were scarcer (n=46) and even fewer articles entailed aspects regarding leadership (n=21).

    Conclusions

    The broad spectrum of aspects that were identified may provide guidance to quality improvement of hospital foodservice. It also indicated research gaps in this field, foremost concerning relational competence and leadership.

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2024
    Nyckelord
    Hospital, Foodservice, Quality improvement, Patients, Scoping review, Healthcare research
    Nationell ämneskategori
    Hälso- och sjukvårdsorganisation, hälsopolitik och hälsoekonomi Näringslära och dietkunskap
    Identifikatorer
    urn:nbn:se:uu:diva-525288 (URN)10.1016/j.nutos.2024.01.001 (DOI)
    Tillgänglig från: 2024-03-21 Skapad: 2024-03-21 Senast uppdaterad: 2026-03-09Bibliografiskt granskad
    2. Improving hospital food and meal provision: a qualitative exploration of nutrition leaders' experiences in implementing change
    Öppna denna publikation i ny flik eller fönster >>Improving hospital food and meal provision: a qualitative exploration of nutrition leaders' experiences in implementing change
    2025 (Engelska)Ingår i: BMC Health Services Research, E-ISSN 1472-6963, Vol. 25, nr 1, artikel-id 410Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    Background: Recently, numerous initiatives have been taken to improve food and meals for hospital inpatients. Research providing in-depth knowledge on leading such improvement initiatives and implementing changes, specifically through facilitation within this multilevel context, is essential. This study aims to explore nutrition leaders' experiences in implementing changes to improve food and meal provision for hospital inpatients, focusing on facilitation activities.

    Method: This is a qualitative interview study within the social constructivist paradigm. Participants were recruited through professional networks, advertisements, and snowballing. Eighteen semi-structured interviews were conducted individually with participants in leadership roles of food and meal improvement initiatives at Swedish hospitals. The interviews were transcribed verbatim and analysed thematically through an i-PARIHS lens.

    Results: Three themes of facilitation activities were identified: 'Building Relationships', 'Placing Food and Meals on the Agenda', and 'Cultivating Skills'. Building relationships involved establishing connections between the service and clinical divisions. Creating common structures and multidisciplinary teamwork enabled collaboration across organisational boundaries. Placing food and meals on the agenda involved both initial and ongoing communication activities, as food and meal tasks were often considered low priority. Cultivating skills encompassed creating learning opportunities for implementing lasting changes, tailored to specific contexts and adopted within everyday practices.

    Conclusions: Collaboration between foodservice and clinical professionals, along with the dissemination of knowledge, appears to be important for implementing changes. Active leadership supports successful implementations by providing structured approaches, including feedback systems, and by contributing to the recognition of improvement initiatives, according to experiences shared during interviews.

    Ort, förlag, år, upplaga, sidor
    Springer Nature, 2025
    Nyckelord
    Hospital, Foodservice, Meals, Patient, Implementation, Improvement, Qualitative interviews, Thematic analysis, Facilitation, Leadership
    Nationell ämneskategori
    Näringslära och dietkunskap Livsmedelsvetenskap
    Identifikatorer
    urn:nbn:se:uu:diva-553842 (URN)10.1186/s12913-025-12499-x (DOI)001449529800003 ()40108558 (PubMedID)2-s2.0-105000497290 (Scopus ID)
    Tillgänglig från: 2025-04-03 Skapad: 2025-04-03 Senast uppdaterad: 2026-03-09Bibliografiskt granskad
    3. Four dimensions of mealtime care highlighted by nutrition leaders: a qualitative study
    Öppna denna publikation i ny flik eller fönster >>Four dimensions of mealtime care highlighted by nutrition leaders: a qualitative study
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Näringslära och dietkunskap
    Identifikatorer
    urn:nbn:se:uu:diva-581671 (URN)
    Tillgänglig från: 2026-03-09 Skapad: 2026-03-09 Senast uppdaterad: 2026-03-09
    4. Translation, adaptation and validation of a tool for capturing staff perspectives on nutrition and mealtime care in Swedish hospitals
    Öppna denna publikation i ny flik eller fönster >>Translation, adaptation and validation of a tool for capturing staff perspectives on nutrition and mealtime care in Swedish hospitals
    (Engelska)Manuskript (preprint) (Övrigt vetenskapligt)
    Nationell ämneskategori
    Näringslära och dietkunskap
    Identifikatorer
    urn:nbn:se:uu:diva-581672 (URN)
    Tillgänglig från: 2026-03-09 Skapad: 2026-03-09 Senast uppdaterad: 2026-03-09
    Ladda ner fulltext (pdf)
    UUThesis_Wilandh,E-2026
    Ladda ner (jpg)
    presentationsbild
  • Disputation: 2026-05-08 13:15 Häggsalen, Uppsala
    Ataei, Alireza
    Uppsala universitet, Teknisk-naturvetenskapliga vetenskapsområdet, Matematisk-datavetenskapliga sektionen, Matematiska institutionen, Matematik I-5.
    Topics in Operator Theory and Partial Differential Equations2026Doktorsavhandling, sammanläggning (Övrigt vetenskapligt)
    Abstract [en]

    This thesis comprises a comprehensive summary and five research articles addressing analytical problems related to differential operators, with a focus on the interplay between operator theory and partial differential equations. The studies cover both linear and nonlinear problems, combining functional analytic techniques with methods from PDE analysis.

    The first two papers investigate the Kato square root problem for parabolic operators with rough coefficients. Paper I considers operators that are elliptic with respect to A2​ Muckenhoupt weights, while Paper II focuses on coefficients in the space of functions with bounded mean oscillation. These works establish estimates for the square root of the operator, providing precise information about its domain and implications for the regularity of solutions to the associated evolution equations.

    Paper III examines parabolic equations with time-dependent coefficients that are elliptic with respect to A2​ Muckenhoupt weights. The study proves the existence of fundamental solutions and derives Gaussian bounds, offering quantitative control over the propagation and decay of solutions.

    The final two papers address nonlinear nonlocal equations involving fractional operators. Paper IV focuses on the linear fractional Laplacian, while Paper V investigates fractional p-Laplacian operators. By analyzing the boundary behavior of solutions, these works establish the isolation of the first eigenvalue of the associated fractional operators.

    Together, the five articles demonstrate how operator-theoretic and PDE techniques can be combined to tackle differential operators in complex settings, including rough or time-dependent coefficients and nonlocal nonlinear phenomena. The results provide a deeper understanding of both linear and nonlinear operators, highlighting the rich interactions between operator theory and PDE analysis in contemporary mathematical research.

    Delarbeten
    1. The Kato square root problem for weighted parabolic operators
    Öppna denna publikation i ny flik eller fönster >>The Kato square root problem for weighted parabolic operators
    2025 (Engelska)Ingår i: Analysis & PDE, ISSN 2157-5045, E-ISSN 1948-206X, Vol. 18, nr 1, s. 141-169Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    We give a simplified and direct proof of the Kato square root estimate for parabolic operators with elliptic part in divergence form and coefficients possibly depending on space and time in a merely measurable way. The argument relies on the nowadays classical reduction to a quadratic estimate and a Carleson-type inequality. The precise organization of the estimates is different from earlier works. In particular, we succeed in separating space and time variables almost completely despite the non-autonomous character of the operator. Hence, we can allow for degenerate ellipticity dictated by a spatial A2-weight, which has not been treated before in this context.

    Ort, förlag, år, upplaga, sidor
    Mathematical Sciences Publishers, 2025
    Nationell ämneskategori
    Matematisk analys
    Identifikatorer
    urn:nbn:se:uu:diva-498669 (URN)10.2140/apde.2025.18.141 (DOI)001447617700004 ()2-s2.0-85214977970 (Scopus ID)
    Tillgänglig från: 2023-03-17 Skapad: 2023-03-17 Senast uppdaterad: 2026-04-14Bibliografiskt granskad
    2. The Kato square root problem for parabolic operators with an anti-symmetric part in BMO
    Öppna denna publikation i ny flik eller fönster >>The Kato square root problem for parabolic operators with an anti-symmetric part in BMO
    2025 (Engelska)Ingår i: Nonlinear Analysis, ISSN 0362-546X, E-ISSN 1873-5215, Vol. 261, artikel-id 113876Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    We solve the Kato square root problem for parabolic operators whose coefficients can be written as the sum of a complex part, which is elliptic, and a real anti-symmetric part which is in BMO. In particular, we allow for unbounded coefficients.

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2025
    Nationell ämneskategori
    Matematisk analys
    Identifikatorer
    urn:nbn:se:uu:diva-498670 (URN)10.1016/j.na.2025.113876 (DOI)001521405000001 ()2-s2.0-105008784248 (Scopus ID)
    Tillgänglig från: 2023-03-17 Skapad: 2023-03-17 Senast uppdaterad: 2026-03-14Bibliografiskt granskad
    3. On Fundamental Solutions and Gaussian Bounds for Degenerate Parabolic Equations with Time-dependent Coefficients
    Öppna denna publikation i ny flik eller fönster >>On Fundamental Solutions and Gaussian Bounds for Degenerate Parabolic Equations with Time-dependent Coefficients
    2024 (Engelska)Ingår i: Potential Analysis, ISSN 0926-2601, E-ISSN 1572-929X, Vol. 62, nr 3, s. 465-483Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    We consider second order degenerate parabolic equations with real, measurable, and time-dependent coefficients. We allow for degenerate ellipticity dictated by a spatial -weight. We prove the existence of a fundamental solution and derive Gaussian bounds. Our construction is based on the original work of Kato (Nagoya Math. J. 19, 93–125 1961).

    Ort, förlag, år, upplaga, sidor
    Springer Nature, 2024
    Nationell ämneskategori
    Matematisk analys
    Identifikatorer
    urn:nbn:se:uu:diva-553812 (URN)10.1007/s11118-024-10143-7 (DOI)001214777700001 ()2-s2.0-105001075433 (Scopus ID)
    Forskningsfinansiär
    Uppsala universitet
    Tillgänglig från: 2025-04-03 Skapad: 2025-04-03 Senast uppdaterad: 2026-03-14Bibliografiskt granskad
    4. A comparison method for the fractional Laplacian and applications
    Öppna denna publikation i ny flik eller fönster >>A comparison method for the fractional Laplacian and applications
    2024 (Engelska)Ingår i: Advances in Mathematics, ISSN 0001-8708, E-ISSN 1090-2082, Vol. 457, artikel-id 109901Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    We study the boundary behavior of solutions to fractional Laplacian. As the first result, the isolation of the first eigenvalue of the fractional Lane-Emden equation is proved in the bounded open sets with Wiener regular boundary. Then, a generalized Hopf's lemma and a global boundary Harnack inequality are proved for the fractional Laplacian. (c) 2024 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).

    Ort, förlag, år, upplaga, sidor
    Elsevier, 2024
    Nyckelord
    Nonlinear eigenvalue problems, Hopf's Lemma, Fractional Laplacian
    Nationell ämneskategori
    Matematisk analys Beräkningsmatematik
    Identifikatorer
    urn:nbn:se:uu:diva-539917 (URN)10.1016/j.aim.2024.109901 (DOI)001316449100001 ()
    Tillgänglig från: 2024-10-08 Skapad: 2024-10-08 Senast uppdaterad: 2026-03-14Bibliografiskt granskad
    5. Boundary behavior of solutions to fractional p-Laplacian equation
    Öppna denna publikation i ny flik eller fönster >>Boundary behavior of solutions to fractional p-Laplacian equation
    2025 (Engelska)Ingår i: Advances in Calculus of Variations, ISSN 1864-8258, E-ISSN 1864-8266, Vol. 18, nr 2, s. 255-273Artikel i tidskrift (Refereegranskat) Published
    Abstract [en]

    In this work, a generalized Hopf’s lemma and a global boundary Harnack inequality are proved for solutions to fractional p-Laplacian equations. Then the isolation of the first   (s,p)  -eigenvalue is shown in bounded open sets satisfying the Wiener criterion.

    Ort, förlag, år, upplaga, sidor
    Walter de Gruyter, 2025
    Nationell ämneskategori
    Matematik
    Identifikatorer
    urn:nbn:se:uu:diva-553811 (URN)10.1515/acv-2023-0048 (DOI)001454820500012 ()2-s2.0-105001868738 (Scopus ID)
    Tillgänglig från: 2025-04-03 Skapad: 2025-04-03 Senast uppdaterad: 2026-03-14Bibliografiskt granskad
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  • Disputation: 2026-05-08 13:15 Eva Netzelius, Blåsenhus, Uppsala
    Stål, Eva-Lena
    Uppsala universitet, Humanistisk-samhällsvetenskapliga vetenskapsområdet, Fakulteten för utbildningsvetenskaper, Institutionen för pedagogik, didaktik och utbildningssociologi.
    Vuxna andraspråkselever i vård- och omsorgsutbildning: Komplexitet i uppgifter och kunskapskrav samt bearbetning av ämnesinnehåll och deltagande i smågruppsarbete2026Doktorsavhandling, monografi (Övrigt vetenskapligt)
    Abstract [en]

    This doctoral thesis investigates the conditions shaping adult second-language learners’ work with subject content in Swedish municipal adult education (komvux) at the upper secondary level, within vocational programmes in health and social care. Situated in linguistically heterogeneous classrooms, the study examines how learners with Swedish as a second language engage with and develop subject knowledge through oral interaction. Drawing on sociocultural and social semiotic perspectives, the thesis analyses the relationship between task complexity, the processing of subject content, and participation in classroom conversations, in educational settings where language functions as a tool for learning. The empirical material consists of 18 written tasks, three course syllabi, and eleven recordings of small-group discussions in three subjects: Medicine 1, Psychology 1, and Ethics and the Human Conditions of Life. The analyses address (1) the complexity articulated in the course requirements and tasks, (2) how second-language learners ex-pand subject content in interaction, and (3) how different group constellations shape participation and opportunities for second-language learners to influence perspectives in small-group conversations. The findings show substantial variation in complexity across the subjects and task types, thereby influencing students’ possibilities to engage with and de-velop subject content. Second-language learners demonstrate an ability to expand subject content, although the nature of these expansions varies across subjects: in Medicine 1, expansions often take the form of reproduction, whereas in Psychology 1 they more frequently involve the production of original formulations. At the same time, similar types of expansions occur in both subjects. Compared to groups consisting solely of second-language speakers, linguistically mixed groups more often manifest asymmetries in interaction. This affects second-language speakers’ opportunities to initiate contributions and to achieve influence of the subject matter in the ongoing interaction. The thesis contributes to didactics research by demonstrating how complexity, subject content, and task design shape students’ engagement with disciplinary content.

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