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  • Rosenström, Alexander H. C.
    et al.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Pain. Akad Sjukhuset, Ingang 70,1tr, S-75185 Uppsala, Sweden.
    Ahmed, Aisha Siddiqah
    Karolinska Univ Hosp, Karolinska Inst, Dept Mol Med & Surg, Upper Gastrointestinal Surg, Solna L8 03, S-17176 Stockholm, Sweden..
    Bersellini Farinotti, Alex
    Karolinska Inst, Dept Physiol & Pharmacol, S-17177 Stockholm, Sweden..
    Kultima, Kim
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Clinical Chemistry. Karolinska Inst, Dept Physiol & Pharmacol, S-17177 Stockholm, Sweden; Akad Sjukhuset, Ingang 40,5tr, S-75185 Uppsala, Sweden.
    Berg, Svante
    Karolinska Univ Hosp, Karolinska Inst, Dept Mol Med & Surg, Upper Gastrointestinal Surg, Solna L8 03, S-17176 Stockholm, Sweden..
    Bjurström, Martin F.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Pain. Akad Sjukhuset, Ingang 70,1tr, S-75185 Uppsala, Sweden.
    Svensson, Camilla I.
    Karolinska Inst, Dept Physiol & Pharmacol, S-17177 Stockholm, Sweden..
    Kosek, Eva
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Pain. Akad Sjukhuset, Ingang 70,1tr, S-75185 Uppsala, Sweden; Karolinska Inst, Dept Clin Neurosci, Nobels Vag 9, S-17177 Stockholm, Sweden.
    CCL25 in the cerebrospinal fluid is negatively correlated with fatigue in chronic pain patients2025In: Brain, behavior, and immunity, ISSN 0889-1591, E-ISSN 1090-2139, Vol. 128, p. 54-64Article in journal (Refereed)
    Abstract [en]

    Background and aim

    Chronic pain is often accompanied by other symptoms such as fatigue and sleep disturbance, and these symptoms all correlate with neuroimmune activation. However, their relation to one another on a neuroimmune axis remains elusive. Based on a recent review, cytokines in the cerebrospinal fluid (CSF) seem to be generally upregulated in patients with chronic pain compared to controls, disregarding pain type. Some of these have the possilibity of altering blood–brain barrier (BBB) permeability. Therefore, cytokine levels in serum and CSF, as well as BBB permeability, were measured in a cohort of patients suffering from either degenerative disc disease (DDD), lumbar disc herniation (LDH) or osteoarthritis (OA). In this exploratory study, we were interested in whether cytokines in the serum or CSF are associated with sleep disturbance or fatigue, with special consideration of the effect of BBB permeability, and whether functional clusters can be found among these cytokines.

    Method

    One-hundred-twenty patients with DDD/LDH/OA, all awaiting surgery, were included. Blood and CSF were collected on the day of surgery. Pain was measured with a visual analog scale 0–100 mm, sleep disturbance was assessed using Pittsburgh Sleep Quality Index (PSQI), and fatigue was measured using the Multidimensional Fatigue Inventory (MFI). A 92-protein multiplex panel (OLINK, Sweden) was used to analyze cytokine expression in serum and CSF, respectively. CSF-serum albumin quotient was measured using ELISA. Non-parametric statistics were used for univariate analyses, and a false discovery rate (FDR) < 0.10 was considered statistically significant. Bonferroni correction was applied to all multivariable protein analyses to obtain conservative effect estimates.

    Main results

    There was an association between BBB permeability and serum-CSF dynamics: thirty-one cytokines showed significant CSF-serum correlation, and BBB permeability was significantly correlated to the quotients of 35 cytokines and to the CSF levels of 11 cytokines. Several cytokines were negatively correlated to both pain at rest and general fatigue. No correlations were found between sleep disturbance and cytokines. Network analyses of serum and CSF cytokines that were correlated with fatigue revealed functional clusters in both compartments. Anxiety, depression, and pain during rest were important regressors for sleep disturbance with an R2 = 0.41. In addition to depression and pain during rest, CSF levels of CCL25 was a significant regressor regarding general fatigue, with an R2 = 0.47.

    Discussion and conclusion

    In this exploratory study of immune profiles in chronic pain cohorts awaiting surgery, the importance of BBB dynamics on serum-CSF cytokine dynamics, and to a lesser extent on central levels of cytokines, is highlighted. Surprisingly, there were no associations between any cytokines in serum or CSF and sleep disturbance, despite a high prevalence of clinically significantly disturbed sleep. In contrast, several associations between general fatigue and cytokine levels in both serum and CSF were found. Cytokines of note are CXCL11 and CCL25 in the CSF, especially because of their direct functional association. CXCL11 has been found to exert neuroprotective effects in animal models, while CCL25 is known as a proinflammatory cytokine and is the only cytokine to fall out as a significant negative contributor to degree of fatigue. While causality cannot be addressed, the negative correlation between CCL25 and fatigue in both univariate and multivariate analyses implies that neuroimmune activity might have an ameliorating effect on the degree of fatigue.

    This study further adds to existing evidence that centrally acting cytokines are associated with severity of symptomatology, and highlights that pain and fatigue seem to have slightly different cytokine profiles. Sleep disturbance needs to be further addressed, ideally using both subjective and objective assessment methods. CCL25 and CXCL11 are interesting biomarkers for future research on pain and associated symptoms.

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  • He, Shiming
    et al.
    Hangzhou City Univ, Sch Informat & Elect Engn, Hangzhou 310015, Peoples R China..
    von Rohr, Alexander
    Rhein Westfal TH Aachen, Inst Data Sci Mech Engn, Biointerface Lab, D-52062 Aachen, Germany.;Tech Univ Munich, TUM Sch Computat Informat & Technol, Dept Comp Engn, Learning Syst & Robot Lab, D-80333 Munich, Germany.;Munich Inst Robot & Machine Intelligence, D-80333 Munich, Germany..
    Baumann, Dominik
    Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Systems and Control. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Artificial Intelligence. Aalto Univ, Dept Elect Engn & Automat, Espoo 02150, Finland..
    Xiang, Ji
    Zhejiang Univ, Coll Elect Engn, Hangzhou 310027, Peoples R China.;Zhejiang Univ, Huzhou Inst, Huzhou 313000, Peoples R China..
    Trimpe, Sebastian
    Rhein Westfal TH Aachen, Inst Data Sci Mech Engn, Biointerface Lab, D-52062 Aachen, Germany..
    Simulation-Aided Policy Tuning for Black-Box Robot Learning2025In: IEEE Transactions on robotics, ISSN 1552-3098, E-ISSN 1941-0468, Vol. 41, p. 2533-2548Article in journal (Refereed)
    Abstract [en]

    How can robots learn and adapt to new tasks and situations with little data? Systematic exploration and simulation are crucial tools for efficient robot learning. We present a novel black-box policy search algorithm focused on data-efficient policy improvements. The algorithm learns directly on the robot and treats simulation as an additional information source to speed up the learning process. At the core of the algorithm, a probabilistic model learns the dependence between the policy parameters and the robot learning objective not only by performing experiments on the robot, but also by leveraging data from a simulator. This substantially reduces interaction time with the robot. Using the model, we can guarantee improvements with high probability for each policy update, thereby facilitating fast, goal-oriented learning. We evaluate our algorithm on simulated fine-tuning tasks and demonstrate the data-efficiency of the proposed dual-information source optimization algorithm. In a real robot learning experiment, we show fast and successful task learning on a robot manipulator with the aid of an imperfect simulator.

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  • Hagen, Johannes
    et al.
    Jönköping Univ, Jönköping Int Business Sch, S-55318 Jönköping, Sweden..
    Laun, Lisa
    Uppsala University, Units outside the University, The Institute for Evaluation of Labour Market and Education Policy (IFAU).
    Lucke, Charlotte
    Stockholm Univ, Dept Econ, S-10691 Stockholm, Sweden..
    Palme, Marten
    Stockholm Univ, Dept Econ, S-10691 Stockholm, Sweden..
    The rising income gradient in life expectancy in Sweden over six decades2025In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 122, no 14, article id e2418145122Article in journal (Refereed)
    Abstract [en]

    This study examines the long-term association between income and life expectancy in Sweden between 1960 and 2021. The study is based on register data that include all Swedish permanent residents aged 40 y and older. The results show that the gap in life expectancy between the top and bottom income percentiles widened substantially: For men, it increased from 3.5 yin the 1960s to 10.9 y by the 2010s, and for women, from 3.8 yin the 1970s to 8.6 y by the 2010s. Despite a reduction in income inequality and an expansion of social spending from the 1960s to the 1990s, health inequality continuously increased over the period under study. The changes of the relation between real income and life expectancy, the so-called Preston curve, reveal a much faster improvement in life expectancy in the upper half of the income distribution than suggested by the cross-sectional relation between income and life expectancy. Analysis of causes of death identified circulatory diseases as the main contributor to improved longevity, while cancer contributed more to the increased gap in life expectancy for women and equally for men. Finally, analysis of the change in the income gradient in avoidable causes of death showed the strongest contribution of preventable causes, both for men and women.

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  • Vieira, Flavio T.
    et al.
    Univ Alberta, Fac Agr Life & Environm Sci, Dept Agr Food & Nutr Sci, Human Nutr Res Unit, 2-004 Li Ka Shing Ctr, Edmonton, AB T6G 2P5, Canada.;Univ Alberta, Fac Med & Dent, Dept Pediat, Edmonton, AB, Canada..
    Godziuk, Kristine
    Univ Alberta, Fac Agr Life & Environm Sci, Dept Agr Food & Nutr Sci, Human Nutr Res Unit, 2-004 Li Ka Shing Ctr, Edmonton, AB T6G 2P5, Canada.;Univ Calif San Francisco, Dept Phys Therapy & Rehabil Sci, San Francisco, CA USA..
    Barazzoni, Rocco
    Univ Trieste, Dept Med Surg & Hlth Sci, Trieste, Italy.;Azienda Sanit Univ Giuliano Isontina, Cattinara Hosp, Trieste, Italy..
    Batsis, John A.
    Univ North Carolina Chapel Hill, Sch Med, Gillings Sch Global Publ Hlth, Div Geriatr Med, Chapel Hill, NC USA.;Univ North Carolina Chapel Hill, Gillings Sch Global Publ Hlth, Dept Nutr, Chapel Hill, NC USA..
    Cederholm, Tommy
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, Clinical Nutrition and Metabolism. Karolinska Univ Hosp, Theme Inflammat & Aging, Stockholm, Sweden..
    Donini, Lorenzo M.
    Sapienza Univ, Dept Expt Med, Rome, Italy..
    Gonzalez, M. Cristina
    Univ Catolica Pelotas, Postgrad Program Hlth & Behav, Pelotas, RS, Brazil..
    Jensen, Gordon L.
    Univ Vermont, Larner Coll Med, Burlington, VT USA..
    Forhan, Mary
    Univ Toronto, Temerty Fac Med, Dept Occupat Sci & Occupat Therapy, Toronto, ON, Canada..
    Prado, Carla M.
    Univ Alberta, Fac Agr Life & Environm Sci, Dept Agr Food & Nutr Sci, Human Nutr Res Unit, 2-004 Li Ka Shing Ctr, Edmonton, AB T6G 2P5, Canada..
    Hidden malnutrition in obesity and knee osteoarthritis: Assessment, overlap with sarcopenic obesity and health outcomes2025In: Clinical Nutrition, ISSN 0261-5614, E-ISSN 1532-1983, Vol. 48, p. 111-120Article in journal (Refereed)
    Abstract [en]

    Background & aims

    Malnutrition may be a hidden but relevant health condition in individuals with obesity and osteoarthritis. The Global Leadership Initiative on Malnutrition (GLIM) consensus includes muscle mass as one of the key phenotypic criteria, potentially enhancing its ability to detect malnutrition in individuals with obesity. We comprehensively profiled the nutritional status of individuals with obesity and advanced knee osteoarthritis and explored associations with health outcomes.

    Methods

    Data from the Prevention Of MusclE Loss in Osteoarthritis (POMELO) study was used, which included individuals with knee osteoarthritis and BMI≥35 kg/m2. Nutritional status was evaluated using the GLIM and sarcopenic obesity (SO) criteria. Low muscle mass (dual-energy x-ray absorptiometry), inflammation (C-reactive protein [CRP]), low muscle strength (handgrip/BMI), objective physical function (chair-stand test, 6-min walk test), and self-reported measures (quality of life, arthritis symptoms, and self-efficacy) were evaluated. Linear regressions were performed between GLIM-malnutrition and health outcomes, adjusted by age.

    Results

    Forty-six individuals (73.9% female, age 64.2 ± 6.7 years, BMI 42.4 ± 4.7 kg/m2) were included. Regarding nutritional status, 26.1% were classified with malnutrition (i.e., defined by the combination of low muscle mass and elevated CRP concentration), 26.1% with SO, and 13% shared both conditions. Individuals with malnutrition presented with worse self-reported physical function (WOMAC function: 38.0 ± 6.6 vs. 32.0 ± 12.5, p = 0.04) and lower arthritis self-efficacy (‘other symptoms’ component: 5.1 ± 1.9 vs. 6.3 ± 1.7, p = 0.04) compared to those without malnutrition. A trend was identified for lower quality of life (visual analog scale 46.8 ± 12.3 vs. 58.3 ± 20.5, p = 0.06) in those with malnutrition. Poor lipid control (R2 = 0.15, β = 0.76, 95% CI 0.08–1.44, p = 0.030), body fat (R2 = 0.14, β = 5.56, 95% CI 1.01–10.11, p = 0.018), and poor arthritis self-efficacy (R2 = 0.09, β = −1.23, 95% CI -2.39–0.06, p = 0.040) were also associated with malnutrition.

    Conclusions

    Participants presented with high malnutrition rates (1 out of 4), and half of them also had SO. Malnutrition was associated with abnormal metabolic parameters, lower arthritis self-efficacy, and worse self-reported physical function. An early nutritional assessment and intervention may be imperative for individuals with osteoarthritis and obesity to mitigate health consequences.

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  • Tkachenko, Oleg
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering, Nanotechnology and Functional Materials.
    Li, Huisi
    KTH Royal Inst Technol, Dept Fiber & Polymer Technol, Div Wood Chem & Pulp Technol, Teknikringen 56-58, S-10044 Stockholm, Sweden..
    Dobele, Galina
    Latvian State Inst Wood Chem, 27 Dzerbenes Str, LV-1006 Riga, Latvia..
    Sevastyanova, Olena
    KTH Royal Inst Technol, Dept Fiber & Polymer Technol, Div Wood Chem & Pulp Technol, Teknikringen 56-58, S-10044 Stockholm, Sweden.;KTH Royal Inst Technol, Wallenberg Wood Sci Ctr, Dept Fiber & Polymer Technol, Teknikringen 56-58, S-10044 Stockholm, Sweden..
    Budnyak, Tetyana
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Materials Science and Engineering, Nanotechnology and Functional Materials. Uppsala University, Disciplinary Domain of Science and Technology, Earth Sciences, Department of Earth Sciences, LUVAL.
    Lignin-enriched cellulose membranes for efficient removal of synthetic dyes from aqueous environments2025In: Reactive & functional polymers, ISSN 1381-5148, E-ISSN 1873-166X, Vol. 213, article id 106275Article in journal (Refereed)
    Abstract [en]

    The study presents cellulose-based membranes derived from lignin-rich (unbleached high-kappa number softwood and hardwood) and lignin-free (fully bleached softwood) kraft pulps for the removal of cationic dyes from both simulated and real aqueous environmental systems. Characterization techniques revealed that the lignin-enriched cellulose-based membranes exhibited enhanced wet mechanical properties and a broader range of functional groups. The functional diversity inherent in lignin-containing membranes resulted in superior adsorption capacity for dyes such as Methylene Blue and Crystal Violet, compared to lignin-free counterparts.

    Detailed adsorption performance metrics—including kinetics, equilibrium studies, and the effects of pH and ionic strength—were thoroughly investigated. The adsorption capacity was 99–102 μmol g−1 for hardwood-derived membranes and 79–85 μmol g−1 for softwood-derived membranes at 25 °C. The process followed the pseudo-first-order kinetic model, likely due to the membranes' low porosity and energy homogeneity, which facilitated rapid adsorption.

    Electrostatic interactions played a pivotal role in dye attraction, while pH and ionic strength studies emphasized the importance of hydrogen bonding between cationic dyes and lignocellulose-based membranes. This research highlights the significance of utilizing cellulose-based membranes with enhanced lignin content in water purification, demonstrating their effective adsorption capabilities in both controlled and real-world environments. The approbation tests of these membranes showcased their substantial potential for practical water purification applications, contributing to the development of sustainable and efficient water treatment solutions.

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  • Public defence: 2025-05-26 13:15 Hörsal 2, Ekonomikum, Uppsala
    Westergren, Jakob
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Business Studies.
    But now tell me how this drink is made: Four essays on the enactment of school competition2025Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    In this doctoral dissertation, I investigate the enactment of competition among upper secondary schools in the Swedish educational system. Following extensive market-inspired reforms in the late 1980s and early 1990s, the responsibility for schools was decentralized to municipalities and a voucher system was introduced aimed at increasing pedagogical diversity and improving school quality through competition. However, the transformation of schools from agents in a public education system to competitive actors has proven to be complex and challenging. The reform sought to stimulate pedagogical innovation and greater student involvement, yet many schools appear to have struggled with following through on this vision. Privately owned schools are increasingly questioned, and several schools struggle to provide pedagogically relevant offerings to students.

    Two research questions guide this inquiry: (1) How does a school become a competing organization? and (2) How does a school create a competitive offering? To make sense of these questions, I draw on institutional organization theory and consumption scholarship. Emphasis is placed on the necessity of legitimacy in competition. Schools must not only have the legal authority to act autonomously to compete, but they must also be socially recognized and accepted as competitors, and their competitive offering must also be legitimate, yet distinct.

    Previous research has largely examined the effects of competition on educational outcomes and schools’ competitive behaviors without investigating how schools become legitimate competing actors in the first place. In other words, legitimacy is assumed. The purpose of this dissertation is then to problematize how schools become competitors and enact competition. Through four empirical papers, I explore how schools navigate the challenges of competition, construct their offerings, and struggle with legitimacy as competitive actors. 

    I find that schools enact competition by stumbling, fumbling, and rumbling. Trial and error seems to define the process of becoming a competitor. Furthermore, enacting competition appears to be much more intrusive than previously suggested as it affects the field of organizations, the very identities of these organizations, and the subjects in those organizations, including students and school leaders. This dissertation therefore contributes to a deeper understanding of the marketization of education and the social construction of competition.

    List of papers
    1. Becoming a competitor: Competitive school identity work and its consequences
    Open this publication in new window or tab >>Becoming a competitor: Competitive school identity work and its consequences
    (English)Manuscript (preprint) (Other academic)
    National Category
    Business Administration
    Identifiers
    urn:nbn:se:uu:diva-553599 (URN)
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-04-01
    2. Insidious rhetoric or impotent ramble?: Disentangling discursive legitimation by an interest group
    Open this publication in new window or tab >>Insidious rhetoric or impotent ramble?: Disentangling discursive legitimation by an interest group
    2025 (English)Conference paper, Oral presentation with published abstract (Refereed)
    Abstract [en]

    In this article, I explore how a for-profit interest group in the Swedish educational system discursively attempts to legitimize its member organizations. For-profit welfare providers are highly contested in Sweden, and a clear majority of the population, regardless of political affiliation, believe profits should be prohibited in education. Against this backdrop, I seek to problematize the view of cunning lobbyists presented in earlier literature on lobbying. I show how the studied interest group mobilizes disjointed discourses that seemingly have little to no effect, as evidenced by the increasing opposition to for-profit schools. For example, independent schools are simultaneously portrayed as victims of a witch hunt and as sovereign actors fighting for the good of Swedish education. I call the identified discourses factualization, victimization, and crypticization. Contrary to the widely held assumption that lobbyists engage in resourceful and calculative actions, I suggest that they instead engage in muddling through. I try to explain the interest group’s discursive legitimation attempts through the lens of the asymmetric pliability of conversational norms, which is a novel tool for understanding micro-rhetorical devices in discursive legitimation.

    Keywords
    Advocacy organizations, Educational institutions, Qualitative, Corporate political activity, Philosophy of language
    National Category
    Business Administration
    Identifiers
    urn:nbn:se:uu:diva-553598 (URN)
    Conference
    85th Annual Meeting of the Academy of Management, Copenhagen, 25-29 July, 2025.
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-04-01
    3. Navigating the creation of educational offerings: Insights from Swedish upper secondary schools
    Open this publication in new window or tab >>Navigating the creation of educational offerings: Insights from Swedish upper secondary schools
    (English)Manuscript (preprint) (Other academic)
    National Category
    Business Administration
    Identifiers
    urn:nbn:se:uu:diva-553600 (URN)
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-04-01
    4. Guaranteeing desirable futures: What schools offer to prospective students when in mutual competition
    Open this publication in new window or tab >>Guaranteeing desirable futures: What schools offer to prospective students when in mutual competition
    (English)Manuscript (preprint) (Other academic)
    National Category
    Business Administration
    Identifiers
    urn:nbn:se:uu:diva-553601 (URN)
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-04-01
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  • Benites, Martin H.
    et al.
    Clin Las Condes, Unidad Pacientes Crit, Santiago, Chile.;Univ Finis Terrae, Escuela Med, Fac Med, Santiago, Chile.;Pontificia Univ Catolica Chile, Escuela Med, Doctorado Ciencias Med, Santiago, Chile.;Pontificia Univ Catolica Chile, Dept Med Intens, Santiago, Chile..
    Suarez-Sipmann, Fernando
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences. Inst Salud Carlos III, CIBER Enfermedades Respiratorias, Madrid, Spain.;La Princesa Univ Hosp, Dept Intens Care Med, Madrid, Spain..
    Kattan, Eduardo
    Pontificia Univ Catolica Chile, Dept Med Intens, Santiago, Chile..
    Cruces, Pablo
    Univ Andres Bello, Fac Ciencias Vida, Santiago, Chile.;Hosp Carmen Dr Luis Valentin Ferrada, Unidad Pacientes Crit Pediat, Santiago, Chile..
    Retamal, Jaime
    Pontificia Univ Catolica Chile, Dept Med Intens, Santiago, Chile..
    Ventilation-induced acute kidney injury in acute respiratory failure: Do PEEP levels matter?2025In: Critical Care, ISSN 1364-8535, E-ISSN 1466-609X, Vol. 29, no 1, article id 130Article, review/survey (Refereed)
    Abstract [en]

    Acute Respiratory Distress Syndrome (ARDS) is a leading cause of morbidity and mortality among critically ill patients, and mechanical ventilation (MV) plays a critical role in its management. One of the key parameters of MV is the level of positive end-expiratory pressure (PEEP), which helps to maintain an adequate lung functional volume. However, the optimal level of PEEP remains controversial. The classical approach in clinical trials for identifying the optimal PEEP has been to compare "high" and "low" levels in a dichotomous manner. High PEEP can improve lung compliance and significantly enhance oxygenation but has been inconclusive in hard clinical outcomes such as mortality and duration of MV. This discrepancy could be related to the fact that inappropriately high or low PEEP levels may adversely affect other organs, such as the heart, brain, and kidneys, which could counteract its potential beneficial effects on the lung. Patients with ARDS often develop acute kidney injury, which is an independent marker of mortality. Three primary mechanisms have been proposed to explain lung-kidney crosstalk during MV: gas exchange abnormalities, such as hypoxemia and hypercapnia; remote biotrauma; and hemodynamic changes, including reduced venous return and cardiac output. As PEEP levels increase, lung volume expands to a variable extent depending on mechanical response. This dynamic underlies two potential mechanisms that could impair venous return, potentially leading to splanchnic and renal congestion. First, increasing PEEP may enhance lung aeration, particularly in highly recruitable lungs, where previously collapsed alveoli reopen, increasing lung volume and pleural pressure, leading to vena cava compression, which can contribute to systemic venous congestion and abdominal organ impairment function. Second, in lungs with low recruitability, PEEP elevation may induce minimal changes in lung volume while increasing airway pressure, resulting in alveolar overdistension, vascular compression, and increased pulmonary vascular resistance. Therefore, we propose that high PEEP settings can contribute to renal congestion, potentially impairing renal function. This review underscores the need for further rigorous research to validate these perspectives and explore strategies for optimizing PEEP settings while minimizing adverse renal effects.

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  • Public defence: 2025-05-21 09:00 room A1:111a, Uppsala
    von Beek, Christopher
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology.
    Mechanisms of mast cell activation by bacterial virulence factors: Implications for mucosal infection2025Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Mast cells are innate immune cells, which can be found in nearly all tissues of the human body. Activated by receptors for IgE or bacterial compounds, mast cells are complex effector cells which respond in many ways to bacterial infection. However, decades of research did not lead to a general model of how mast cells are activated by bacteria. Examples of pathogenic bacteria include the extracellular Streptococcus equi subspecies equi (S. equi) that colonizes the airways in horses by secretion of powerful toxins, and the invasive enterobacterium Salmonella enterica subspecies Typhimurium (S.Tm). The latter is taken up with contaminated food and invades the epithelium in the distal small and proximal large intestine to reach the deeper layers of the tissue. Mast cells are present as early responders towards both bacteria. In this thesis, I elucidated how pathogenic bacteria activate these versatile immune cells. In Paper I, I demonstrated which virulence factors of S. equi that activate mast cells, by utilizing bacterial knockout mutants of several virulence factors or a combination of those. While superantigens or the protective capsule did not lead to mast cell activation, removal of the pore-forming toxin streptolysin S led to complete ablation of the mast cell response to S. equi, establishing that sublytic pore formation leads to membrane stress, which results in inflammation. To compare our findings from extracellular bacteria with the invasive S.Tm, we explored in Paper II, if its type-three-secretion system induces a similar sublytic pore-mediated immune activation. We found however, that S.Tm triggers mast cell activation by a two-step activation process, involving 1) priming by toll-like receptor (TLR) 4 and 2) effector-induced immunity. While we mainly focused on classical mouse mast cells, we extended our findings further in Paper III. In this study, the use of connective tissue-type and mucosal-type mouse mast cells, as well as a human mast cell line broadened the validity of our two-step activation model. We discovered, moreover, that mucosal-like mast cells lack TLR2 and TLR4, making them only responsive to invasive bacteria. Overall, this thesis contributes to our understanding of the general mechanisms for how mast cells are activated by bacteria.

    List of papers
    1. Streptococcal sagA activates a proinflammatory response in mast cells by a sublytic mechanism
    Open this publication in new window or tab >>Streptococcal sagA activates a proinflammatory response in mast cells by a sublytic mechanism
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    2019 (English)In: Cellular Microbiology, ISSN 1462-5814, E-ISSN 1462-5822, Vol. 21, no 9, article id e13064Article in journal (Refereed) Published
    Abstract [en]

    Mast cells are implicated in the innate proinflammatory immune defence against bacterial insult, but the mechanisms through which mast cells respond to bacterial encounter are poorly defined. Here, we addressed this issue and show that mast cells respond vividly to wild type Streptococcus equi by up-regulating a panel of proinflammatory genes and by secreting proinflammatory cytokines. However, this response was completely abrogated when the bacteria lacked expression of sagA, whereas the lack of a range of other potential virulence genes (seeH, seeI, seeL, seeM, hasA, seM, aroB, pyrC, and recA) had no effect on the amplitude of the mast cell responses. The sagA gene encodes streptolysin S, a lytic toxin, and we next showed that the wild type strain but not a sagA-deficient mutant induced lysis of mast cells. To investigate whether host cell membrane perturbation per se could play a role in the activation of the proinflammatory response, we evaluated the effects of detergent- and pneumolysin-dependent lysis on mast cells. Indeed, exposure of mast cells to sublytic concentrations of all these agents resulted in cytokine responses of similar amplitudes as those caused by wild type streptococci. This suggests that sublytic membrane perturbation is sufficient to trigger full-blown proinflammatory signalling in mast cells. Subsequent analysis showed that the p38 and Erk1/2 signalling pathways had central roles in the proinflammatory response of mast cells challenged by either sagA-expressing streptococci or detergent. Altogether, these findings suggest that sagA-dependent mast cell membrane perturbation is a mechanism capable of activating the innate immune response upon bacterial challenge.

    Place, publisher, year, edition, pages
    WILEY, 2019
    Keywords
    mast cells, streptococci, toxins
    National Category
    Immunology
    Identifiers
    urn:nbn:se:uu:diva-396146 (URN)10.1111/cmi.13064 (DOI)000474727500001 ()31155820 (PubMedID)
    Funder
    Swedish Foundation for Strategic Research , ICA16-0031Swedish Research Council
    Available from: 2019-11-04 Created: 2019-11-04 Last updated: 2025-03-18Bibliographically approved
    2. A two-step activation mechanism enables mast cells to differentiate their response between extracellular and invasive enterobacterial infection
    Open this publication in new window or tab >>A two-step activation mechanism enables mast cells to differentiate their response between extracellular and invasive enterobacterial infection
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    2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, no 1, article id 904Article in journal (Refereed) Published
    Abstract [en]

    Mast cells localize to mucosal tissues and contribute to innate immune defense against infection. How mast cells sense, differentiate between, and respond to bacterial pathogens remains a topic of ongoing debate. Using the prototype enteropathogen Salmonella Typhimurium (S.Tm) and other related enterobacteria, here we show that mast cells can regulate their cytokine secretion response to distinguish between extracellular and invasive bacterial infection. Tissue-invasive S.Tm and mast cells colocalize in the mouse gut during acute Salmonella infection. Toll-like Receptor 4 (TLR4) sensing of extracellular S.Tm, or pure lipopolysaccharide, causes a modest induction of cytokine transcripts and proteins, including IL-6, IL-13, and TNF. By contrast, type-III-secretion-system-1 (TTSS-1)-dependent S.Tm invasion of both mouse and human mast cells triggers rapid and potent inflammatory gene expression and >100-fold elevated cytokine secretion. The S.Tm TTSS-1 effectors SopB, SopE, and SopE2 here elicit a second activation signal, including Akt phosphorylation downstream of effector translocation, which combines with TLR activation to drive the full-blown mast cell response. Supernatants from S.Tm-infected mast cells boost macrophage survival and maturation from bone-marrow progenitors. Taken together, this study shows that mast cells can differentiate between extracellular and host-cell invasive enterobacteria via a two-step activation mechanism and tune their inflammatory output accordingly.

    Place, publisher, year, edition, pages
    Springer Nature, 2024
    National Category
    Immunology in the medical area Microbiology in the medical area Immunology Cell and Molecular Biology
    Identifiers
    urn:nbn:se:uu:diva-526205 (URN)10.1038/s41467-024-45057-w (DOI)001163662700001 ()38291037 (PubMedID)
    Funder
    Knut and Alice Wallenberg Foundation, KAW 2016.0063Knut and Alice Wallenberg Foundation, 2016-00803Knut and Alice Wallenberg Foundation, 2020-00882Knut and Alice Wallenberg Foundation, 2018-02223Swedish Research Council
    Available from: 2024-04-11 Created: 2024-04-11 Last updated: 2025-03-18Bibliographically approved
    3. ­­­Mast Cell Subtype Features Impact the Interplay with Pathogenic Salmonella Typhimurium Bacteria
    Open this publication in new window or tab >>­­­Mast Cell Subtype Features Impact the Interplay with Pathogenic Salmonella Typhimurium Bacteria
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    (English)Manuscript (preprint) (Other academic)
    National Category
    Medical and Health Sciences
    Research subject
    Biology
    Identifiers
    urn:nbn:se:uu:diva-550171 (URN)
    Available from: 2025-02-12 Created: 2025-02-12 Last updated: 2025-03-18
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  • Eliason, Gabriella
    et al.
    Örebro Univ, Fac Med & Hlth, Dept Resp Med, Örebro, Sweden..
    Ekström, Magnus
    Lund Univ, Fac Med, Dept Clin Sci Lund Resp Med Allergol & Palliat Med, Lund, Sweden..
    Montgomery, Scott
    Karolinska Inst, Dept Med, Clin Epidemiol Div, Stockholm, Sweden.;Örebro Univ, Fac Med & Hlth, Sch Med Sci, Clin Epidemiol & Biostat, Örebro, Sweden.;UCL, Dept Epidemiol & Publ Hlth, London, England..
    Giezeman, Maaike
    Örebro Univ, Fac Med & Hlth, Sch Med Sci, Örebro, Sweden..
    Hasselgren, Mikael
    Örebro Univ, Fac Med & Hlth, Sch Med Sci, Örebro, Sweden.;Ctr Clin Res & Educ, Karlstad, Varmland, Sweden..
    Janson, Christer
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Lung- allergy- and sleep research.
    Kisiel, Marta A.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Occupational and Environmental Medicine.
    Lisspers, Karin
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, General practice.
    Nager, Anna
    Karolinska Inst, Div Family Med & Primary Care, Dept Neurobiol Care Sci & Soc, Stockholm, Sweden..
    Sandelowsky, Hanna
    Karolinska Inst, Dept Med, Clin Epidemiol Div, Stockholm, Sweden.;Karolinska Inst, Div Family Med & Primary Care, Dept Neurobiol Care Sci & Soc, Stockholm, Sweden.;Acad Primary Care Ctr, Stockholm, Sweden..
    Ställberg, Björn
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, General practice.
    Sundh, Josefin
    Örebro Univ, Fac Med & Hlth, Dept Resp Med, Örebro, Sweden..
    Associations of comorbid heart disease and depression/anxiety with multidimensional breathlessness in COPD: A cross-sectional study2025In: Respiratory Medicine, ISSN 0954-6111, E-ISSN 1532-3064, Vol. 241, article id 108053Article in journal (Refereed)
    Abstract [en]

    Background

    Comorbid conditions and breathlessness are associated with poor outcomes in chronic obstructive pulmonary disease (COPD). We evaluated the associations of comorbid heart disease and depression/anxiety with breathlessness in daily life among people with COPD.

    Methods

    Cross-sectional analysis from the PRAXIS cohort in central Sweden. Data on patient characteristics and the modified Medical Research Council (mMRC) and Dyspnea-12 breathlessness instruments (D-12) were obtained from questionnaires in 2022. Lung function data were collected from record review. Outcome variables were clinically significant breathlessness defined as mMRC≥2 and D-12 total (>2.7), physical (>1.4) and affective (>1.2) scores above published minimal clinical important differences. Associations of heart disease and depression/anxiety with each outcome were analyzed using multivariable Poisson regression adjusted for relevant confounders.

    Results

    In 522 included patients, mMRC ≥2 was present in 59 % and increased D-12 total, physical and affective domain scores in 69 %, 74 %, and 50 %, respectively. Heart disease was independently associated with mMRC (relative risk ratio [95 % confidence interval] 1.34 [1.17–1.53]), D12 physical domain (1.12[1.02–1.24]) and D-12 affective domain (1.20[1.02–1.42]). Depression/anxiety was independently associated with increased D-12 affective domain (1.25[1.04–1.49]). In addition, previous exacerbations and GOLD stage 3–4 were associated with mMRC and D-12, respectively.

    Conclusion

    In COPD, comorbid heart disease is associated with both activity-related breathlessness and with physical and affective domains of breathlessness while depression/anxiety is associated with the affective domain of breathlessness. As the influence of different dimensions of breathlessness may differ according to comorbidity the D-12 instrument adds more information when assessing breathlessness in patients with COPD.

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  • Padrik, Peeter
    et al.
    Tartu Univ Hosp, Clin Hematol & Oncol, EE-51014 Tartu, Estonia.;OU Antegenes, EE-50603 Tartu, Estonia..
    Tonisson, Neeme
    Univ Tartu, Inst Genom, EE-51010 Tartu, Estonia.;Tartu Univ Hosp, Genet & Personalized Med Clin, EE-50406 Tartu, Estonia..
    Hovda, Tone
    Vestre Viken Hosp Trust, Dept Radiol, N-3004 Drammen, Norway..
    Sahlberg, Kristine Kleivi
    Vestre Viken Hosp Trust, Dept Res & Innovat, N-3004 Drammen, Norway.;Univ Oslo, Inst Clin Med, Fac Med, N-0424 Oslo, Norway..
    Hovig, Eivind
    Oslo Univ Hosp, Inst Canc Res, Dept Tumor Biol, N-0424 Oslo, Norway..
    Costa, Luis
    Ctr Hosp Univ Lisboa Norte, Hosp Santa Maria, P-1649028 Lisbon, Portugal.;Univ Lisbon, Fac Med, Inst Med Mol Joao Lobo Antunes, P-1649028 Lisbon, Portugal.;Univ Lisbon, Fac Med, P-1649028 Lisbon, Portugal..
    da Costa, Goncalo Nogueira
    Ctr Hosp Univ Lisboa Norte, Hosp Santa Maria, P-1649028 Lisbon, Portugal.;Univ Lisbon, Fac Med, P-1649028 Lisbon, Portugal..
    Feldman, Inna
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences.
    Sampaio, Filipa
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, Social medicine/CHAP.
    Pajusalu, Sander
    Tartu Univ Hosp, Genet & Personalized Med Clin, EE-50406 Tartu, Estonia.;Univ Tartu, Inst Clin Med, EE-51010 Tartu, Estonia. Tartu Univ Hosp, Clin Surg, EE-50406 Tartu, Estonia..
    Ojamaa, Kristiina
    Tartu Univ Hosp, Clin Hematol & Oncol, EE-51014 Tartu, Estonia.;OU Antegenes, EE-50603 Tartu, Estonia..
    Kallak, Kersti
    Tartu Univ Hosp, Clin Hematol & Oncol, EE-51014 Tartu, Estonia.;OU Antegenes, EE-50603 Tartu, Estonia..
    Tihamae, Ave-Triin
    Roht, Laura
    Tartu Univ Hosp, Genet & Personalized Med Clin, EE-50406 Tartu, Estonia..
    Kahre, Tiina
    Tartu Univ Hosp, Genet & Personalized Med Clin, EE-50406 Tartu, Estonia.;Univ Tartu, Inst Clin Med, EE-51010 Tartu, Estonia. Tartu Univ Hosp, Clin Surg, EE-50406 Tartu, Estonia..
    Lepland, Anni
    Tartu Univ Hosp, Genet & Personalized Med Clin, EE-50406 Tartu, Estonia..
    Sober, Siim
    OU Antegenes, EE-50603 Tartu, Estonia..
    Kruuv-Kao, Krista
    Tamm, Madli
    Univ Tartu, Inst Genom, EE-51010 Tartu, Estonia..
    Varghese, Jajini
    Royal Free London NHS Trust, UCL Div Surg & Intervent Sci, London NW3 2QG, England..
    Evans, Dafydd Gareth
    Univ Manchester, Manchester Ctr Genom Med, Div Evolut Infect & Genom Sci, Manchester M13 9PL, England..
    Guidance for the Clinical Use of the Breast Cancer Polygenic Risk Scores2025In: Cancers, ISSN 2072-6694, Vol. 17, no 7, article id 1056Article, review/survey (Refereed)
    Abstract [en]

    Background/Objectives: Polygenic risk scores (PRSs) have been extensively studied and are increasingly applied in healthcare. One of the most studied and developed areas is predictive medicine for breast cancer, but there is no wider consensus on the indications for the clinical use of PRSs for breast cancer. This current guidance endeavours to articulate the scientific evidence underpinning the clinical utility of PRSs in stratifying breast cancer risk, with a particular emphasis on clinical application.

    Methods: This guidance has been prepared by a group of experts who have been active in breast cancer PRS research and development, combining a review of the evidence base with expert opinion for indications for clinical use.

    Results: Based on data from various studies and existing breast cancer prevention and screening services, the indications for clinical use of breast cancer PRSs can be divided into the following scenarios: (1) Management of cancer-free women with a family history of cancer; (2) individual personalised breast cancer prevention and screening in healthcare services; and (3) breast cancer screening programs for more personalised screening.

    Conclusions: The integration of PRSs into clinical practice enables healthcare providers to deliver more accurate risk assessments, personalised prevention strategies, and optimised screening programmes, thereby improving patient outcomes and enhancing the effectiveness of breast cancer care. PRS testing represents a novel component in clinical breast cancer risk assessment, supporting a personalised, risk-based approach to breast cancer prevention and screening.

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  • Dahlby-Skoog, Malin
    et al.
    Karolinska Inst, Dept Clin Sci Intervent & Technol, Stockholm, Sweden..
    Kalandadze, Tamara
    Ostfold Univ Coll, Dept Educ ICT & Learning, Halden, Norway..
    Karltorp, Eva
    Karolinska Inst, Dept Clin Sci Intervent & Technol, Stockholm, Sweden.;Karolinska Univ Hosp, Dept Ear Nose & Throat Dis, Stockholm, Sweden..
    Lyxell, Björn
    Univ Oslo, Dept Special Needs Educ, Oslo, Norway.;Linköping Univ, Swedish Inst Disabil Res, Linnaeus Ctr Head, Dept Behav Sci & Learning, Linköping, Sweden..
    Löfkvist, Ulrika
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences, Speech-Language Pathology. Karolinska Inst, Dept Clin Sci Intervent & Technol, Stockholm, Sweden.
    Hearing Early Opens More Doors: Long-Term Effects of Age at Implantation on Metaphor Comprehension in Adolescents and Young Adults With Cochlear Implants2025In: Journal of Speech, Language and Hearing Research, ISSN 1092-4388, E-ISSN 1558-9102, Vol. 68, no 3, p. 1105-1125Article in journal (Refereed)
    Abstract [en]

    Purpose:

    There is solid evidence that an early age at cochlear implantation, which reduces the period of auditory deprivation, positively impacts early spoken language development. However, there is an urgent need for more research to understand the long-term effects of early implantation on higher linguistic skills, such as metaphor comprehension. In this study, we explored metaphor comprehension in Swedish-speaking adolescents and young adults with cochlear implant (CI), compared to that of typically hearing peers, as well as its relationship with the age at first CI.

    Method:

    The participants consisted of 39 individuals who received CI before 30 months of age (Mage = 16.9 years, mean age at implant = 15.7 months) and a group of 27 individuals with typical hearing (Mage = 14.9 years). To assess metaphor comprehension, we developed a multiple-choice task that was administrated verbally. Standardized tests were used to evaluate vocabulary, reading skills, and nonverbal cognitive skills.

    Results:

    No significant differences were found in metaphor comprehension or other linguistic or cognitive skills between individuals with CI and the typically hearing peers. Further analysis indicated a moderate negative correlation between metaphor comprehension and age at implantation and other linguistic skills.

    Conclusions:

    Early-implanted children develop metaphor comprehension comparable to their typically hearing peers, with earlier age at implantation being associated with better metaphor comprehension in adolescence. However, age at implantation only partially explains the variation in metaphor comprehension abilities. Further research is needed to identify other factors that influence the development of metaphor comprehension in individuals with CI.

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  • Kaplin, Jennifer
    Uppsala University, Disciplinary Domain of Science and Technology, Earth Sciences, Department of Earth Sciences.
    Milankovitch Cycles Recorded in Terrestrial Mudstones from the Middle to Late Triassic2025Independent thesis Advanced level (degree of Master (Two Years)), 20 credits / 30 HE creditsStudent thesis
    Abstract [en]

    This study investigates the relationship between lithology and magnetic susceptibility in loessites from south-west England to examine if orbital forcing is a driving mechanism behind terrestrial climate change of interior Triassic hothouse Pangea. Using magnetic susceptibility and a simple colour analysis, a correlation could be established between lithology and changes in magnetic susceptibility. The magnetic susceptibility signal was analysed with a Fast Fourier Transformation and a Wavelet analysis to determine the cyclicity of change over time. Results showed strong coupling with precession, obliquity and eccentricity, though mostly when the long 400 kyr eccentricity cycle would peak in intensity.

    Changes in lithology and magnetic susceptibility signal are caused by changes in environment from dry sub aerial desert basin to flooded desert basin under elevated ground water conditions, with lower magnetic susceptibility signals in the waterlogged sediments. These changes in water levels are thought to derive from increase in runoff coupled with a strong monsoonal precipitation. Orbital forcing is determined as a driving mechanism behind these changes, though mostly with high eccentricity within the 400 kyr cycle. It is hypothesised here that the mechanism behind the strong connection to the 400 kyr cycle is the very arid climate of interior Pangea, which makes it hard for the shorter orbital cycles to drive significant shifts in environment without the amplification under enhanced seasonality periods of the long eccentricity cycle.

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    2025_Kaplin_Master
  • Ranade, Ashish S.
    et al.
    Deenanath Mangeshkar Hosp & Res Ctr, Blooming Buds Ctr Pediat Orthopaed, Pune 411004, India..
    Oka, Gauri A.
    Bharati Vidyapeeth Univ Med Coll & Hosp, Cent Res & Publicat Unit, Pune, India..
    Belthur, Mohan V.
    Phoenix Childrens Hosp, Dept Pediat Orthopaed, Phoenix, AZ USA..
    Shah, Hitesh
    Kasturba Med Coll & Hosp, Dept Paediat Orthopaed, Manipal, India..
    Herman, Martin J.
    St Christophers Hosp Children, Philadelphia, PA USA.;Drexel Univ, Coll Med, Philadelphia, PA USA..
    Fernandes, James A.
    Sheffield Childrens Hosp, Western Bank, Paediat Limb Reconstruct Serv, Sheffield, England..
    Hamdy, Reggie
    McGill Univ, Hlth Ctr, Shriners Hosp Children, Limb Deformity Unit,Div Orthopaed Surg,Dept Pediat, Montreal, PQ, Canada..
    Hailer, Yasmin
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Orthopaedics and Handsurgery.
    Canavese, Federico
    IRCCS Ist Giannina Gaslini, Orthoped & Traumatol Dept, Genoa, Italy.;Univ Genoa, DISC Dipartimento Sci Chirurg & Diagnost Integrate, Genoa, Italy..
    Monsell, Fergal
    Bristol Childrens Hosp, Bristol, England..
    Gelfer, Yael
    St Georges Hosp NHS Fdn Trust, London, England..
    Eastwood, Deborah M.
    Great Ormond St Hosp Sick Children, Dept Paediat Orthopaed, London, England.;Royal Natl Orthopaed Hosp, London, England..
    Huser, Aaron
    Washington Univ, Sch Med, St. Louis, MO USA..
    Laine, Jennifer
    Univ Minnesota, Dept Orthopaed Surg, Gillette Childrens Specialty Healthcare, St Paul, MN USA..
    Mccarthy, James
    Cincinnati Childrens Hosp, Cincinnati, OH USA.;Univ Cincinnati, Cincinnati, OH USA..
    Aroojis, Alaric
    PD Hinduja Hosp, Lilavati Hosp, Mumbai, India.;Bai Jerbai Wadia Hosp Children, Mumbai, India..
    Cooper, Anthony
    Univ British Columbia, BC Childrens Hosp, Vancouver, BC, Canada..
    Barr, Alejandro
    Univ Los Andes, Clin Univ Los Andes, Santiago, Chile..
    Herman Mare, Pieter
    Univ KwaZulu Natal, Greys Hosp, Dept Orthopaed, Pietermaritzburg, South Africa..
    Hosny, Gamal A.
    Benha Univ Hosp, Banha, Egypt..
    Kishan, Shyam
    Med City Childrens Hosp, Dallas, TX USA..
    Marangoz, Salih
    Acibadem Univ, Sch Med, Istanbul, Turkiye..
    Moreno Grangeiro, Patricia
    Univ Sao Paulo, Hosp Clin, Fac Med, Inst Ortopedia & Traumatol, Sao Paulo, Brazil..
    Moller-Madsen, Bjarne
    Aarhus Univ, Aarhus Univ Hosp, Inst Clin Med, Dept Childrens Orthopaed, Aarhus, Denmark..
    Nunn, Timothy
    CURE Childrens Hosp, Addis Ababa, Ethiopia..
    Shah, Maulin
    Orthokids Clin, Ahmadabad, India..
    An International Consensus on Evaluation and Management of Idiopathic Genu Valgum: A Modified Delphi Survey2025In: Journal of Pediatric Orthopaedics, ISSN 0271-6798, E-ISSN 1539-2570, Vol. 45, no 5, p. 274-280Article in journal (Refereed)
    Abstract [en]

    Background: Idiopathic genu valgum beyond physiological limits may require treatment, which is based on age, growth remaining, and the magnitude of the deformity. There is no consensus on clinical, or radiologic evaluation, indications, and management of idiopathic genu valgum, which can range from observation to surgical treatment using various modalities. If available, such guidelines will help surgeons offer optimal treatment to their patients. The aim of our study was to establish an expert consensus on the evaluation and treatment of idiopathic genu valgum.

    Methods: An international panel of 29 pediatric orthopaedic surgeons from 17 countries with clinical and research experience in the management of limb deformity participated in a modified Delphi survey. Surgeons were provided with patient and deformity characteristics and voted on 46 statements on history, clinical examination, radiographic evaluation, and treatment options for idiopathic genu valgum in round 1. Consensus was defined as when statements received >= 70% votes. Statements that were important but received <70% votes were reworded for clarity in round 2 (n=13).

    Results: Consensus was achieved for 28/46 statements and included obtaining a full-length standing radiograph of the lower extremities and measuring joint orientation angles. Participants did not agree to offer surgical treatment based only on the intermalleolar distance. They recommended surgical treatment if the mechanical axis falls in zone 2 or beyond on the lateral side and using guided growth by tension-band plating when the growth remaining is at least 2 years. The panel agreed on performing common peroneal nerve decompression for specific indications such as acute, opening wedge osteotomy of >20 degrees, but not for gradual correction. Consensus was not reached for indications and methods of bone age assessment, treatment when growth remaining is <1 year, indications for implant removal after guided growth in younger children, and the type of osteotomy for acute deformity correction.

    Conclusions: We have generated consensus statements to guide the management of idiopathic genu valgum. Statements that lack consensus are areas for future multicenter research.

    Level of Evidence: Level V.

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  • Chacon-Duque, J. Camilo
    et al.
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden.;Stockholm Univ, Dept Archaeol & Class Studies, Stockholm, Sweden..
    Thorpe, Jessica A. Thomas
    Wellcome Sanger Genome Inst, Cambridge, England..
    Li, Wenxi
    Ctr Palaeogenet, Stockholm, Sweden.;Univ Copenhagen, Globe Inst, Copenhagen, Denmark..
    Dehasque, Marianne
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Human Evolution. Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden..
    Pecnerova, Patricia
    Univ Copenhagen, Dept Biol, Copenhagen, Denmark..
    Barlow, Axel
    Bangor Univ, Sch Environm & Nat Sci, Bangor, Wales..
    Diez-del-Molino, David
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden..
    Henneberger, Kirstin
    Univ Potsdam, Inst Biochem & Biol, Fac Sci, Adapt Evolutionary Genom, Potsdam, Germany..
    Jin, Chenyu
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden.;Swedish Museum Nat Hist, Dept Bioinformat & Genet, Stockholm, Sweden..
    Moreland, Kelsey N.
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden..
    Paijmans, Johanna L. A.
    Bangor Univ, Sch Environm & Nat Sci, Bangor, Wales.;Univ Cambridge, Dept Zool, Evolutionary Ecol Grp, Cambridge, England..
    van der Valk, Tom
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden.;Swedish Museum Nat Hist, Dept Bioinformat & Genet, Stockholm, Sweden..
    Westbury, Michael, V
    Univ Copenhagen, Globe Inst, Copenhagen, Denmark..
    Wijnands, Flore
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Geol Sci, Stockholm, Sweden..
    Barnes, Ian
    Nat Hist Museum, London, England..
    Germonpre, Mietje
    Royal Belgian Inst Nat Sci, Brussels, Belgium..
    Hall, Elizabeth
    Govt Yukon Terr, Palaeontol Program, Whitehorse, YT, Canada..
    Hewitson, Susan
    Govt Yukon Terr, Palaeontol Program, Whitehorse, YT, Canada..
    Mol, Dick
    Nat Hist Museum Rotterdam, Rotterdam, Netherlands..
    Nikolskiy, Pavel
    Russian Acad Sci, Geol Inst, Moscow, Russia..
    Sablin, Mikhail
    Russian Acad Sci, Zool Inst, St Petersburg, Russia..
    Vartanyan, Sergey
    Russian Acad Sci, Nrth East Interdisciplinary Sci Res Inst NA Shilo, Far East Branch, Magadan, Russia..
    Zazula, Grant D.
    Govt Yukon Terr, Palaeontol Program, Whitehorse, YT, Canada..
    Götherström, Anders
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Archaeol & Class Studies, Stockholm, Sweden..
    Lister, Adrian M.
    Nat Hist Museum, London, England..
    Hofreiter, Michael
    Univ Potsdam, Inst Biochem & Biol, Fac Sci, Adapt Evolutionary Genom, Potsdam, Germany..
    Heintzman, Peter D.
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Geol Sci, Stockholm, Sweden..
    Dalen, Love
    Ctr Palaeogenet, Stockholm, Sweden.;Stockholm Univ, Dept Zool, Stockholm, Sweden.;Swedish Museum Nat Hist, Dept Bioinformat & Genet, Stockholm, Sweden..
    A Million Years of Mammoth Mitogenome Evolution2025In: Molecular biology and evolution, ISSN 0737-4038, E-ISSN 1537-1719, Vol. 42, no 4, article id msaf065Article in journal (Refereed)
    Abstract [en]

    The genomic study of specimens dating to the Early and Middle Pleistocene (EP and MP), a period spanning from 2.6 million years ago (Ma) to 126 thousand years ago (ka), has the potential to elucidate the evolutionary processes that shaped present-day biodiversity. Obtaining genomic data from this period is challenging, but mitochondrial DNA, given its higher abundance compared to nuclear DNA, could play an important role to understand evolutionary processes at this time scale. In this study, we report 34 new mitogenomes, including two EP and nine MP mammoth (Mammuthus spp.) specimens from Siberia and North America and analyze them jointly with >200 publicly available mitogenomes to reconstruct a transect of mammoth mitogenome diversity throughout the last million years. We find that our EP mitogenomes fall outside the diversity of all Late Pleistocene (LP) mammoths, while those derived from MP mammoths are basal to LP mammoth Clades 2 and 3, supporting an ancient Siberian origin of these lineages. In contrast, the geographical origin of Clade 1 remains unresolved. With these new deep-time mitogenomes, we observe diversification events across all clades that appear consistent with previously hypothesized MP and LP demographic changes. Furthermore, we improve upon an existing methodology for molecular clock dating of specimens >50 ka, demonstrating that specimens need to be individually dated to avoid biases in their age estimates. Both the molecular and analytical improvements presented here highlight the importance of deep-time genomic data to discover long-lost genetic diversity, enabling better assessments of evolutionary histories.

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  • Törnblom, Margareta
    et al.
    Lund Univ, Dept Clin Sci, Sect Rheumatol, Lund, Sweden.;Spenshult Res & Dev Ctr, Halmstad, Sweden.;Helsingborg Hosp, Dept Rehabil, Helsingborg, Sweden..
    Haglund, Emma
    Lund Univ, Dept Clin Sci, Sect Rheumatol, Lund, Sweden.;Spenshult Res & Dev Ctr, Halmstad, Sweden.;Halmstad Univ, Sch Business Innovat & Sustainabil, Dept Environm & Biosci, Halmstad, Sweden..
    Bremander, Ann
    Lund Univ, Dept Clin Sci, Sect Rheumatol, Lund, Sweden.;Spenshult Res & Dev Ctr, Halmstad, Sweden.;Univ Hosp Southern Denmark, Danish Hosp Rheumat Dis, Sonderborg, Denmark..
    Nilsdotter, Anna
    Gothenburg Univ, Inst Clin Sci, Sahlgrenska Acad, Dept Orthopaed, Gothenburg, Sweden.;Sahlgrens Univ Hosp, Dept Orthopaed, Gothenburg, Sweden..
    Andersson, Maria L. E.
    Lund Univ, Dept Clin Sci, Sect Rheumatol, Lund, Sweden.;Spenshult Res & Dev Ctr, Halmstad, Sweden.;Halmstad Univ, Sch Business Innovat & Sustainabil, Dept Environm & Biosci, Halmstad, Sweden..
    Hettiarachchi, Pasan
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Occupational and Environmental Medicine.
    Johansson, Peter J.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Occupational and Environmental Medicine. Uppsala Univ Hosp, Occupat & Environm Med, Uppsala, Sweden.
    Svartengren, Magnus
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Occupational and Environmental Medicine. Uppsala Univ Hosp, Occupat & Environm Med, Uppsala, Sweden.
    Aili, Katarina
    Spenshult Res & Dev Ctr, Halmstad, Sweden.;Halmstad Univ, Sch Hlth & Welf, Dept Hlth & Sport, Halmstad, Sweden..
    Associations between knee pain and knee-loading physical activities at work and leisure: a cross-sectional study based on accelerometer measurements2025In: BMC Musculoskeletal Disorders, E-ISSN 1471-2474, Vol. 26, no 1, article id 345Article in journal (Refereed)
    Abstract [en]

    Background

    Knee pain is often an early sign of knee osteoarthritis (KOA). Physical activities (PA) constitute the recommended regime to those affected. However, knee-loading PA at work is linked to an increased risk for KOA. The primary aim of this study was to investigate associations between knee pain and accelerometer-measured knee-loading PA, at work and leisure respectively. The secondary aim was to investigate knee-related problems in relation to self-reported physical effort at work.

    Methods

    This cross-sectional study included 107 working participants (aged 30–67) with knee pain. Knee pain was evaluated using the Knee Injury and Osteoarthritis Outcome Scale (KOOS), subscale Pain. Knee-loading PA (including daily steps, time in upright position, stair walking), and sitting/lying were measured by accelerometer for one week. Each knee-loading PA was analysed separately for the measurement periods: (1) total period, (2) time at work, and (3) leisure on workdays. Knee-related problems were evaluated by the KOOS subscales Symptoms, Activities of Daily Living, Function in Sport and Recreation, and Quality of Life. Analyses were made with linear regression, and stratified by high or low self-reported physical effort at work.

    Results

    Participants with more knee pain walked on average fewer steps per day, and spent less time in an upright position during leisure on workdays, unstandardized coefficient (β) = 0.001, p = 0.044, β = 0.075, p = 0.001 respectively, i.e. spent less time in knee-loading PA. The associations were stronger for those reporting high physical effort at work, β = 0.116, p = 0.016. Participants with high physical effort at work rated their (knee-related) quality of life worse. There were no associations between knee pain and knee-loading PA during work hours.

    Conclusions

    Participants with more knee pain were less physically active during leisure, with stronger associations among those with higher physical effort at work. Those reporting high physical effort at work had worse (knee-related) quality of life compared to participants reporting low effort at work. This highlights the importance of taking knee-loading PA at work and leisure into account when recommending exercise regimes to individuals with knee pain.

    Trial registration

    ClinicalTrials.Gov (NCT04928170), Date of registration: 2017-12-20.

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  • Olsen Syversen, Malin
    et al.
    Univ Oslo, Dept Pharm, Sect Pharmacol & Pharmaceut Biosci, Oslo, Norway..
    Glatkauskas, Mikas
    Univ Oslo, Dept Pharm, Sect Pharmacol & Pharmaceut Biosci, Oslo, Norway..
    Mathiesen, Liv
    Univ Oslo, Dept Pharm, Sect Pharmacol & Pharmaceut Biosci, Oslo, Norway..
    Lea, Marianne
    Univ Oslo, Dept Pharm, Sect Pharmacol & Pharmaceut Biosci, Oslo, Norway.;Oslo Hosp Pharm, Hosp Pharm Enterprise, Dept Pharmaceut Serv, South Eastern Norway, Oslo, Norway..
    Gallefoss Denstad, Berit
    Svensberg, Karin
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy.
    Facilitators and barriers to medication self-management for patients with multiple long-term conditions transitioning from hospital to home2025In: Exploratory Research in Clinical and Social Pharmacy, E-ISSN 2667-2766, Vol. 18, article id 100598Article in journal (Refereed)
    Abstract [en]

    Background

    Being a patient with multiple long-term conditions (MLTCs) often entails a need for complex medication treatment, which poses a challenge to medication self-management. Medication self-management during transition of care is often hindered by challenges such as inadequate communication, which increases the risk of medication errors and adverse outcomes.

    Aim

    Identify facilitators and barriers to medication self-management for patients with MLTCs transitioning from hospital to home.

    Methods

    Semi-structured interviews were conducted in patient's homes 1–2 weeks after hospital discharge. Interviews were transcribed and analysed by qualitative deductive content analysis using the Taxonomy of Every Day Self-management Strategies (TEDSS) framework. The data collection continued until enough information power and meaning saturation was reached.

    Results

    Twenty-one patients and three next of kin participated. Numerous facilitators and barriers to medication self-management were identified within all seven TEDSS domains, which varied extensively between individuals. Resource and process strategies were the most frequently discussed domains, while health behaviour and social interaction strategies were less frequently discussed. Key facilitators identified were access to resources that support medication self-management and knowing the medication's purpose. Key barriers included patients perceiving medications as burdensome or not recognising the importance of their medications.

    Conclusions

    This study highlights the complex and wide spectre of facilitators and barriers to medication self-management for patients with MLTCs transitioning from hospital to home. In clinical practice, patients' medication self-management could be supported through a holistic approach adapted to the individual patient's daily life, including improved care coordination and patient empowerment.

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  • Láruson, Áki Jarl
    et al.
    Marine & Freshwater Res Inst, Hafnarfjordur, Iceland..
    Gunnarsdóttir, Hafrún
    Northeast Iceland Nat Res Ctr, Husavik, Iceland.;Univ Iceland, Fac Life & Environm Sci, Reykjavik, Iceland..
    Goodall, Jake
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology, Genetics and Genomics. Univ Iceland, Fac Life & Environm Sci, Reykjavik, Iceland.
    Pálsson, Snæbjörn
    Univ Iceland, Fac Life & Environm Sci, Reykjavik, Iceland..
    Jónsdóttir, Ingibjörg G.
    Univ Iceland, Fac Life & Environm Sci, Reykjavik, Iceland..
    Population stratification in Northern shrimp (Pandalus borealis) off Iceland evident from RADseq analysis2025In: BMC Ecology and Evolution, E-ISSN 2730-7182, Vol. 25, no 1, article id 31Article in journal (Refereed)
    Abstract [en]

    The northern shrimp Pandalus borealis (ice. Stóri kampalampi) is a North Atlantic crustacean of significant commercial interest which has been harvested consistently in Icelandic waters since 1936. In Icelandic waters, the length at which this protandrous species transitions from male to female differs between the inshore and offshore populations, suggesting a biologically meaningful stratification which may or may not be plastic. Using reduced representative genomes assembled from RADseq data, sampled from 96 individuals collected at two time points (2018 and 2021), we compare the level of genetic structure across a gradient extending out of Skjálfandi bay, north Iceland. These data are compared to samples from a far offshore site, some 65 km out from the bay, as well as another inshore fjord in Arnarfjörður, in northwestern Iceland. Since 1999, no harvesting of inshore populations of P. borealis in Skjálfandi has been allowed due to stock decline, but harvesting of offshore stocks has continued. Uncertainty surrounding the extent of structure between the in- and offshore aggregations has remained. Here we report distinct genetic structure defining the inshore and offshore populations of northern shrimp, but find significant admixture between the two. Most importantly, we see that genetically inshore populations of northern shrimp extend far outside the harvest boundaries of inshore shrimp, and offshore individuals may exhibit punctuated migration into the inshore areas.

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    FULLTEXT01
  • Breznau, Nate
    et al.
    Leibniz Ctr Lifelong Learning, German Inst Adult Educ, Org & Program Planning, D-53175 Bonn, Germany..
    Rinke, Eike Mark
    Univ Leeds, Sch Polit & Int Studies, Leeds LS2 9JT, W Yorkshire, England..
    Wuttke, Alexander
    Ludwig Maximilians Univ Munchen, Geschwister Scholl Inst, D-81541 Munich, Germany..
    Adem, Muna
    Univ Maryland, Dept Sociol, College Pk, MD 47405 USA..
    Adriaans, Jule
    Univ Bielefeld, Fac Sociol, D-33615 Bielefeld, Germany..
    Akdeniz, Esra
    Marmara Univ, Sch Med, TR-34722 Istanbul, Turkiye..
    Alvarez-Benjumea, Amalia
    CSIC, Ctr Ciencias Humanas & Sociales, Inst Publ Goods & Policies IPP, Madrid 28003, Spain..
    Andersen, Henrik K.
    Tech Univ Chemnitz, Inst Sociol, D-09126 Chemnitz, Germany..
    Auer, Daniel
    Collegio Carlo Alberto, Social & Polit Sci, I-10122 Turin, Italy..
    Azevedo, Flavio
    Univ Utrecht, Dept Interdisciplinary Social Sci, NL-3584 CH Utrecht, Netherlands..
    Bahnsen, Oke
    Univ Mannheim, Sch Social Sci, D-68159 Mannheim, Germany..
    Bai, Ling
    Balzer, Dave
    Johannes Gutenberg Univ Mainz, Inst Sociol, D-55128 Mainz, Germany..
    Bauer, Paul C.
    Univ Freiburg, Inst Polit Sci, D-79085 Freiburg, Germany.;Ludwig Maximilians Univ Munchen, Inst Stat, D-79098 Munich, Germany..
    Bauer, Gerrit
    Ludwig Maximilians Univ Munchen, Dept Sociol, D-80801 Munich, Germany..
    Baumann, Markus
    GESIS Leibniz Inst Social Sci, Off Execut Board, D-68159 Mannheim, Germany..
    Baute, Sharon
    Univ Konstanz, Dept Polit & Publ Adm, D-78457 Constance, Germany..
    Benoit, Verena
    Univ Bamberg, Fac Social Sci Econ & Business Adm, D-96052 Bamberg, Germany..
    Bernauer, Julian
    Univ Mannheim, Mannheim Ctr European Social Res MZES, D-68131 Mannheim, Germany..
    Berning, Carl
    Johannes Gutenberg Univ Mainz, Inst Polit Sci, D-55099 Mainz, Germany..
    Berthold, Anna
    Univ Bamberg, Fac Social Sci Econ & Business Adm, D-96052 Bamberg, Germany..
    Bethke, Felix S.
    Peace Res Inst Frankfurt PRIF, Res Dept Intrastate Conflict 4, D-60329 Frankfurt, Germany..
    Biegert, Thomas
    London Sch Econ & Polit Sci, Dept Social Policy, London WC2A 2AE, England..
    Blinzler, Katharina
    GESIS Leibniz Inst Social Sci, Survey Data Curat, D-50667 Mannheim, Germany..
    Blumenberg, Johannes N.
    GESIS Leibniz Inst Social Sci, Knowledge Exchange & Outreach, D-67067 Mannheim, Germany..
    Bobzien, Licia
    Univ Potsdam, Fac Econ & Social Sci, D-10117 Potsdam, Germany..
    Bohman, Andrea
    Umeå Univ, Dept Sociol, S-90187 Umeå, Sweden..
    Bol, Thijs
    Univ Amsterdam, Dept Sociol, NL-1012 WP Amsterdam, Netherlands..
    Bostic, Amie
    Univ Texas Rio Grande Valley, Dept Sociol, Edinburg, TX 78539 USA..
    Brzozowska, Zuzanna
    Austrian Acad Sci, Vienna Inst Demog, Vienna, Austria.;Austrian Natl Publ Hlth Inst, Vienna, Austria..
    Burgdorf, Katharina
    Univ Bremen, Sch Social Sci, D-28359 Bremen, Germany..
    Burger, Kaspar
    Univ Potsdam, Dept Educ, D-14469 Potsdam, Germany.;Univ Zurich, Jacobs Ctr Prod Youth Dev, CH-8006 Zurich, Switzerland.;UCL, Social Res Inst, London WC1H 0AL, England..
    Busch, Kathrin
    Castillo, Juan-Carlos
    Univ Chile, Millennium Nucleus Digital Inequal & Opportun NUD, Dept Sociol, Santiago 7800284, Chile.;Univ Chile, Ctr Social Conflict & Cohes Studies COES, Santiago 7800284, Chile..
    Chan, Nathan
    Loyola Marymount Univ, Dept Polit Sci & Int Relat, Los Angeles, CA 90045 USA..
    Christmann, Pablo
    GESIS Leibniz Inst Social Sci, Data & Res Soc, D-68159 Mannheim, Germany..
    Connelly, Roxanne
    Univ Edinburgh, Sch Social & Polit Sci, Edinburgh EH8 9LD, Midlothian, Scotland..
    Czymara, Christian S.
    Goethe Univ Frankfurt, Inst Sociol, D-60323 Frankfurt, Germany..
    Damian, Elena
    Sciensano, Epidemiol & Publ Hlth, B-1050 Brussels, Belgium..
    de Rooij, Eline A.
    Simon Fraser Univ, Polit Sci, Burnaby, BC V5A 1S6, Canada..
    Ecker, Alejandro
    Heidelberg Univ, Inst Polit Sci, D-69115 Heidelberg, Germany..
    Edelmann, Achim
    Medialab Sci Po, F-75007 Paris, France..
    Eder, Christina
    GESIS Leibniz Inst Social Sci, Survey Data Curat, D-50667 Mannheim, Germany..
    Eger, Maureen A.
    Umeå Univ, Dept Sociol, S-90187 Umeå, Sweden.;Ctr Adv Study Behav Sci, Stanford, CA 94305 USA..
    Ellerbrock, Simon
    Univ Mannheim, Mannheim Ctr European Social Res MZES, D-68131 Mannheim, Germany..
    Forke, Anna
    Forster, Andrea
    Univ Utrecht, Dept Sociol, NL-3584 CS Utrecht, Netherlands..
    Freire, Danilo
    Emory Univ, Dept Quantitat Theory & Methods, Atlanta, GA 30306 USA..
    Gaasendam, Chris
    Govt Flanders Belgium, Dept Work & Social Econ, Brussels, Belgium..
    Gavras, Konstantin
    Univ Mannheim, Sch Social Sci, D-68159 Mannheim, Germany..
    Gayle, Vernon
    Univ Edinburgh, Sch Social & Polit Sci, Edinburgh EH8 9LD, Midlothian, Scotland..
    Gessler, Theresa
    Europa Univ Viadrina, Kulturwissensch Fak, D-15230 Frankfurt, Germany..
    Gnambs, Timo
    Leibniz Inst Educ Trajectories, Educ Measurement, D-96047 Bamberg, Germany..
    Godefroidt, Amelie
    Katholieke Univ Leuven, Ctr Res Peace & Dev, B-3000 Leuven, Belgium..
    Gromping, Max
    Griffith Univ, Sch Govt & Int Relat, Nathan, Qld 4111, Australia..
    Gross, Martin
    Univ Tubingen, Dept Sociol, D-72074 Tubingen, Germany..
    Gruber, Stefan
    SHARE BERLIN Inst, Res Data Ctr & Commun, D-10115 Berlin, Germany..
    Gummer, Tobias
    GESIS Leibniz Inst Social Sci, Data & Res Soc, D-68159 Mannheim, Germany..
    Hadjar, Andreas
    Univ Fribourg, Div Sociol Social Policy & Social Work, CH-1700 Fribourg, Switzerland..
    Halbherr, Verena
    Assoc Doctoral Studies Baden Wuerttemberg, D-70174 Stuttgart, Germany..
    Heisig, Jan Paul
    WZB Berlin Social Sci Ctr, Res Grp Hlth & Social Inequal, D-10785 Berlin, Germany..
    Hellmeier, Sebastian
    WZB Berlin Social Sci Ctr, Transformat Democracy Unit, D-10785 Berlin, Germany..
    Heyne, Stefanie
    Univ Mannheim, Mannheim Ctr European Social Res MZES, D-68131 Mannheim, Germany..
    Hirsch, Magdalena
    WZB Berlin Social Sci Ctr, Res Unit Migrat, Integrat, Transnationalizat, D-10785 Berlin, Germany..
    Hjerm, Mikael
    Umeå Univ, Dept Sociol, S-90187 Umeå, Sweden..
    Hochman, Oshrat
    GESIS Leibniz Inst Social Sci, Data & Res Soc, D-68159 Mannheim, Germany..
    Hoffler, Jan H.
    Univ Espiritu Santo, ReplicationWiki, Fac Emprendimiento Negocios & Econ, Vitoria, ES, Brazil.;EQ Lab, San Juan, PR USA..
    Hovermann, Andreas
    Hans Bockler Fdn, Wirtschafts & Sozialwissensch Inst WSI, D-40474 Dusseldorf, Germany..
    Hunger, Sophia
    Univ Bremen, SOCIUM Res Ctr Inequal & Social Policy, D-10785 Bremen, Germany..
    Hunkler, Christian
    Humboldt Univ, Berlin Inst Integrat & Migrat Res BIM, D-10099 Berlin, Germany..
    Huth-Stockle, Nora
    Univ Wuppertal, Sch Human & Social Sci, D-42119 Wuppertal, Germany..
    Ignacz, Zsofia S.
    Goethe Univ Frankfurt, Inst Sociol, D-60323 Frankfurt, Germany..
    Israel, Sabine
    Jacobs, Laura
    Univ Antwerp, Dept Polit Sci, B-2000 Antwerp, Belgium..
    Jacobsen, Jannes
    German Ctr Integrat & Migrat Res DeZIM, Cluster Data Methods Monitoring, Berlin, Germany..
    Jaeger, Bastian
    Tilburg Univ, Dept Social Psychol, NL-5037 AB Tilburg, Netherlands..
    Jungkunz, Sebastian
    Univ Bonn, Inst Polit Sci & Sociol, D-53111 Bonn, Germany..
    Jungmann, Nils
    GESIS Leibniz Inst Social Sci, Survey Data Curat, D-50667 Mannheim, Germany..
    Kanjana, Jennifer
    Kauff, Mathias
    Med Sch Hamburg, Dept Psychol, D-20457 Hamburg, Germany..
    Khan, Salman
    Univ Illinois, Econ, Chicago, IL USA..
    Khatua, Sayak
    Oregon State Univ, Sch Publ Policy, Corvallis, OR 97330 USA..
    Kleinert, Manuel
    Justus Liebig Univ Giessen, Inst Sociol, D-35394 Giessen, Germany..
    Klinger, Julia
    Kolb, Jan-Philipp
    Stat Bundesamt Wiesbaden, Stat Bundesamt, D-67549 Wiesbaden, Germany..
    Kolczynska, Marta
    Polish Acad Sci, Inst Polit Studies, Dept Res Social & Inst Transformat, PL-00625 Warsaw, Poland..
    Kuk, John
    Michigan State Univ, Dept Polit Sci, E Lansing, MI 48823 USA..
    Kunissen, Katharina
    Johannes Gutenberg Univ Mainz, Inst Sociol, D-55128 Mainz, Germany..
    Sinatra, Dafina Kurti
    Ctr Evaluat, Cologne, Germany..
    Langenkamp, Alexander
    Goethe Univ Frankfurt, Inst Sociol, D-60323 Frankfurt, Germany..
    Lee, Robin C.
    Princeton Univ, Dept Sociol, Princeton, NJ 08544 USA..
    Lersch, Philipp M.
    German Inst Econ Res, SocioEcon Panel, D-10117 Berlin, Germany..
    Liu, David
    Lobel, Lea-Maria
    German Inst Econ Res, SocioEcon Panel, D-10117 Berlin, Germany..
    Lutscher, Philipp
    Univ Oslo, Dept Polit Sci, N-0851 Oslo, Norway..
    Mader, Matthias
    Witen Herdecke Univ, Dept Philosophy Polit & Econ, D-58488 Witten, Germany..
    Madia, Joan E.
    Univ Oxford, Dept Primary Care & Hlth Sci, Oxford OX1 1JD, England..
    Malancu, Natalia
    Univ Neuchatel, Swiss Forum Migrat & Populat Studies, CH-1205 Neuchatel, Switzerland..
    Maldonado, Luis
    Pontificia Univ Catolica Chile, Inst Sociol, Santiago 7820436, Chile..
    Marahrens, Helge
    Georgetown Univ, Mass Data Inst, Washington, DC 20057 USA..
    Martin, Nicole
    Univ Manchester, Dept Polit, Manchester M1 9JS, Lancs, England..
    Martinez, Paul
    Western Governors Univ, Dept Inst Res, Millcreek, UT 84107 USA..
    Mayerl, Jochen
    Tech Univ Chemnitz, Inst Sociol, D-09126 Chemnitz, Germany..
    Mayorga, Oscar J.
    Equity Res Cooperat, Data Freedom, Philadelphia, PA 19107 USA..
    McDonnell, Robert
    McManus, Patricia
    Indiana Univ Bloomington, Dept Sociol, Bloomington, IN 47405 USA..
    McWagner, Kyle
    Univ Wisconsin Milwaukee, Dept Polit Sci, Milwaukee, WI 53211 USA..
    Meeusen, Cecil
    Katholieke Univ Leuven, Ctr Sociol Res, Dept Sociol, B-3000 Leuven, Belgium..
    Meierrieks, Daniel
    WZB Berlin Social Sci Ctr, Res Unit Migrat, Integrat, Transnationalizat, D-10785 Berlin, Germany..
    Mellon, Jonathan
    Westpoint Dept Syst Engn, Dept Polit, Manchester M19 2JS, Lancs, England..
    Merhout, Friedolin
    Univ Copenhagen, Dept Sociol, DK-1353 Copenhagen, Denmark.;Univ Copenhagen, Ctr Social Data Sci, DK-1353 Copenhagen, Denmark..
    Merk, Samuel
    Karlsruhe Univ Educ, Dept Sch Dev, D-76133 Karlsruhe, Germany..
    Meyer, Daniel
    Fed Inst Res Bldg Urban Affairs & Spatial Dev BBS, Competence Ctr Reg Dev, D-03048 Bonn, Germany..
    Micheli, Leticia
    Leiden Univ, Dept Social Econ & Organisat Psychol, NL-2333 AK Leiden, Netherlands..
    Mijs, Jonathan
    Boston Univ, Dept Sociol, Boston, MA 02215 USA..
    Moya, Cristobal
    Inst Econ Res, SocioEcon Panel, D-10117 Berlin, Germany..
    Neunhoeffer, Marcel
    Ludwig Maximilians Univ Munchen, Sch Social Sci, Munich, Germany..
    Nust, Daniel
    Tech Univ Dresden, Dept Geosci, D-01069 Dresden, Germany..
    Nygard, Olav
    Linköping Univ, Div Migrat Ethn & Soc REMESO, S-60174 Linköping, Sweden..
    Ochsenfeld, Fabian
    Max Planck Gesell, Adm Headquarters, D-80539 Munich, Germany..
    Otte, Gunnar
    Johannes Gutenberg Univ Mainz, Inst Sociol, D-55128 Mainz, Germany..
    Pechenkina, Anna
    Utah State Univ, Dept Polit Sci, Logan, UT 84321 USA..
    Pickup, Mark
    Simon Fraser Univ, Polit Sci, Burnaby, BC, Canada..
    Prosser, Christopher
    Raes, Louis
    Tilburg Univ, Dept Econ, NL-5037 AB Tilburg, Netherlands..
    Ralston, Kevin
    Univ Edinburgh, Sch Social & Polit Sci, Edinburgh EH8 9LD, Midlothian, Scotland..
    Ramos, Miguel
    Univ Birmingham, Dept Social Policy Sociol & Criminol, Birmingham B15 2TT, W Midlands, England..
    Reichert, Frank
    Roets, Arne
    Univ Ghent, Dept Dev Personal & Social Psychol, B-9000 Sint Pietersnieuwstraat, Belgium..
    Rogers, Jonathan
    Univ Calif Los Angeles, Sch Law, Empir Res Grp, Los Angeles, CA USA..
    Ropers, Guido
    Samuel, Robin
    Univ Luxembourg, Dept Social Sci, L-4366 Luxembourg, Luxembourg..
    Sand, Gregor
    SHARE Berlin Inst, SHARE Operat, D-10115 Berlin, Germany..
    Petrarca, Constanza Sanhueza
    Australian Natl Univ, Sch Polit & Int Relat, Canberra, ACT 2132, Australia..
    Schachter, Ariela
    Washington Univ St Louis, Dept Sociol, St Louis, MO 63130 USA..
    Schaeffer, Merlin
    Univ Copenhagen, Dept Sociol, DK-1353 Copenhagen, Denmark.;Univ Copenhagen, Ctr Social Data Sci, DK-1353 Copenhagen, Denmark..
    Schieferdecker, David
    Free Univ Berlin, Inst Media & Commun Studies, D-14195 Berlin, Germany..
    Schlueter, Elmar
    Justus Liebig Univ Giessen, Inst Sociol, D-35394 Giessen, Germany..
    Schmidt, Katja
    Humboldt Univ, Dept Social Sci, D-10117 Berlin, Germany.;SocioEcon Panel, Dept Social Sci, D-10117 Berlin, Germany..
    Schmidt, Regine
    Univ Bamberg, Fac Social Sci Econ & Business Adm, D-96052 Bamberg, Germany..
    Schmidt-Catran, Alexander
    Goethe Univ Frankfurt, Inst Sociol, D-60323 Frankfurt, Germany..
    Schmiedeberg, Claudia
    Ludwig Maximilians Univ Munchen, Dept Sociol, D-80801 Munich, Germany..
    Schneider, Jurgen
    Leibniz Inst Res & Informat Educ, Teacher & Teaching Qual, D-60323 Frankfurt, Germany..
    Schoonvelde, Martijn
    Univ Groningen, Chair Grp European Polit & Soc, NL-9712 EK Groningen, Netherlands..
    Schulte-Cloos, Julia
    Univ Marburg, Dept Polit Sci, D-35037 Marburg, Germany..
    Schumann, Sandy
    UCL, Dept Secur & Crime Sci, London WC1E 6BT, England..
    Schunck, Reinhard
    Univ Wuppertal, Sch Human & Social Sci, D-42119 Wuppertal, Germany..
    Seuring, Julian
    Leibniz Inst Educ Trajectories, Dept Migrat, D-96047 Bamberg, Germany..
    Silber, Henning
    Univ Michigan, Inst Social Res, Ann Arbor, MI 48109 USA..
    Sleegers, Willem
    Tilburg Univ, Dept Social Psychol, NL-5037 AB Tilburg, Netherlands..
    Sonntag, Nico
    Johannes Gutenberg Univ Mainz, Inst Sociol, D-55128 Mainz, Germany..
    Staudt, Alexander
    Steiber, Nadia
    Univ Vienna, Dept Sociol, A-1090 Vienna, Austria..
    Steiner, Nils D.
    Johannes Gutenberg Univ Mainz, Inst Polit Sci, D-55099 Mainz, Germany..
    Sternberg, Sebastian
    Stiers, Dieter
    Katholieke Univ Leuven, Ctr Polit Sci Res, B-3000 Leuven, Belgium..
    Stojmenovska, Dragana
    Univ Amsterdam, Dept Sociol, NL-1012 WP Amsterdam, Netherlands..
    Storz, Nora
    Expert Council Intergrat & Migrat, D-10178 Berlin, Germany..
    Striessnig, Erich
    Univ Vienna, Dept Sociol, A-1090 Vienna, Austria..
    Stroppe, Anne-Kathrin
    GESIS Leibniz Inst Social Sci, Survey Data Curat, D-50667 Mannheim, Germany..
    Suchow, Jordan W.
    Stevens Inst Technol, Sch Business, Hoboken, NJ 07030 USA..
    Teltemann, Janna
    Univ Hildesheim, Inst Social Sci, D-31141 Hildesheim, Germany..
    Tibajev, Andrey
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Women's and Children's Health, International Maternal and Reproductive Health and Migration.
    Tung, Brian
    Washington Univ St Louis, Dept Sociol, St Louis, MO 63130 USA..
    Vagni, Giacomo
    UCL, Social Res Inst UCL, London WC1E 6BT, England..
    Van Assche, Jasper
    Univ Libre Bruxelles, Ctr Social & Cultural Psychol CESCUP, BE-1050 Brussels, Belgium.;North West Univ, Optentia Res Unit, ZA-2531 Potchefstroom, South Africa..
    van der Linden, Meta
    Univ Utrecht, Dept Interdisciplinary Social Sci, NL-3584 CH Utrecht, Netherlands..
    van der Noll, Jolanda
    Univ Hagen, Dept Psychol, D-58097 Hagen, Germany..
    Van Hootegem, Arno
    Univ Oslo, Dept Sociol & Human Geog, N-851 Oslo, Norway..
    Vogtenhuber, Stefan
    Inst Adv Studies, Educ & Employment, A-1080 Vienna, Austria..
    Voicu, Bogdan
    Romanian Acad, Res Inst Qual Life, Bucharest 010071, Romania.;Lucian Blaga Univ Sibiu, Dept Sociol, Sibiu 550024, Romania..
    Wagemans, Fieke
    Netherlands Inst Social Res, Beleidsvisies Burgervisies Gedragingen, Policy Perspect Citizen Perspect & Behav, NL-2594 The Hague, Netherlands..
    Wehl, Nadja
    Univ Konstanz, Res Cluster Polit Inequal, D-78464 Constance, Germany..
    Werner, Hannah
    Univ Zurich, Dept Polit Sci, CH-8050 Zurich, Switzerland..
    Wiernik, Brenton M.
    Winter, Fabian
    Max Planck Inst Res Collect Goods, Mech Normat Change, D-53113 Bonn, Germany..
    Wolf, Christof
    GESIS Leibniz Inst Social Sci, D-68159 Mannheim, Germany.;Univ Mannheim, D-68159 Mannheim, Germany..
    Wu, Cary
    York Univ, Dept Sociol, Toronto, ON M3J 1P3, Canada..
    Yamada, Yuki
    Univ Bamberg, Fac Social Sci Econ & Business Adm, D-96052 Bamberg, Germany..
    Zakula, Bjorn
    Zhang, Nan
    Kyushu Univ, Fac Arts & Sci, Fukuoka 8190395, Japan..
    Ziller, Conrad
    Univ Duisburg Essen, Dept Polit Sci, D-47057 Duisburg, Germany..
    Zins, Stefan
    Fed Employment Agcy, Inst Employment Res, D-90478 Nurnberg, Germany..
    Zoltak, Tomasz
    Polish Acad Sci, Inst Philosophy & Sociol, Dept Computat Social Sci, PL-00330 Warsaw, Poland..
    Nguyen, Hung H. V.
    Univ Bremen, Polit Sci, D-28359 Bremen, Germany..
    The reliability of replications: a study in computational reproductions2025In: Royal Society Open Science, E-ISSN 2054-5703, Vol. 12, no 3, article id 241038Article in journal (Refereed)
    Abstract [en]

    This study investigates researcher variability in computational reproduction, an activity for which it is least expected. Eighty-five independent teams attempted numerical replication of results from an original study of policy preferences and immigration. Reproduction teams were randomly grouped into a 'transparent group' receiving original study and code or 'opaque group' receiving only a method and results description and no code. The transparent group mostly verified original results (95.7% same sign and p-value cutoff), while the opaque group had less success (89.3%). Second-decimal place exact numerical reproductions were less common (76.9 and 48.1%). Qualitative investigation of the workflows revealed many causes of error, including mistakes and procedural variations. When curating mistakes, we still find that only the transparent group was reliably successful. Our findings imply a need for transparency, but also more. Institutional checks and less subjective difficulty for researchers 'doing reproduction' would help, implying a need for better training. We also urge increased awareness of complexity in the research process and in 'push button' replications.

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    fulltext
  • van der Lecq, Tshilidzi
    et al.
    Univ Cape Town, Dept Surg, Div Ophthalmol, Cape Town, South Africa..
    Rhoda, Natasha
    Univ Cape Town, Dept Paediat & Child Hlth, Cape Town, South Africa..
    Jordaan, Esmè
    South African Med Res Council, Biostat Res Unit, Cape Town, South Africa.;Univ Western Cape, Stat & Populat Studies Dept, Cape Town, South Africa..
    Seobi, Teboho
    Univ Cape Town, Dept Surg, Div Ophthalmol, Cape Town, South Africa..
    Visser, Linda
    Univ Stellenbosch, Ophthalmol, Cape Town, Western Cape, South Africa..
    Gilbert, Clare
    London Sch Hyg & Trop Med, Clin Res, London, England..
    Muloiwa, Rudzani
    Univ Cape Town, Dept Paediat & Child Hlth, Cape Town, South Africa..
    Holmström, Gerd
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Ophthalmic Biophysics.
    Screening for retinopathy of prematurity (ROP) in South Africa: data from a newly established prospective regional register2025In: BMJ Open Ophthalmology, E-ISSN 2397-3269, Vol. 10, no 1, article id e002036Article in journal (Refereed)
    Abstract [en]

    Objective Retinopathy of prematurity (ROP) registers enable population-based studies to monitor ROP screening programmes to improve their effectiveness. The aim of this study was to determine the frequency of ROP and the coverage of screening in a South African cohort using a prospective ROP South African (ROPSA) register.

    Methods and analysis Infants born from 1 May 2022 to 31 January 2023 and screened prospectively for ROP at five neonatal intensive care units in Cape Town were included. The screening criteria were a gestational age (GA) <32 weeks or birth weight (BW) <1250 g. Data were extracted from the ROPSA register and analysed.

    Results 696 of 1154 (60.3%) eligible infants were screened, almost half of whom (45.7%) did not complete screening. ROP was detected in 220 infants (31.6%, 95% CI 28.3% to 35.3%), 7 (1.0%) of whom required treatment. Infants with incomplete screening had a lower mean GA than those who completed screening; 28.7 (SD 1.6, range 25–33) and 29.1 (SD 1.7, range 24–36) weeks, respectively (p=0.004) and a lower mean BW; 1048 (SD 203, range 650–1690) g and 1108.5 (SD 227, range 640–1840) g, respectively (p<0.001).

    Conclusions Data from the ROPSA register on the frequency of any ROP and treatment-requiring ROP may be biased due to low screening coverage and high incomplete screening. Reasons need to be explored and corrective interventions initiated. The ROPSA register will enable the impact of these interventions to be monitored. The findings of this study will contribute to the ongoing revision of South African national ROP screening guidelines.

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  • Ehliasson, Kent
    et al.
    Dalarna Univ, Dept Work Sci, Roda vagen 3, S-79188 Falun, Sweden..
    Eriksson, Johannes
    Stockrosen AB, Nora, Sweden..
    LoMartire, Riccardo
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Disciplinary Domain of Medicine and Pharmacy, research centers etc., Center for Clinical Research Dalarna. Dalarna Univ, Sch Hlth & Welf, Falun, Sweden.
    Dropout from Substance Use Disorder Treatment at a Swedish Private Care Institution and Its Associated Risk Factors2025In: Substance Use: Research and Treatment, E-ISSN 2976-8357, Vol. 19, p. 1-7Article in journal (Refereed)
    Abstract [en]

    Background and objectives:

    The drop-out rate for inpatient treatment for substance use disorder continues to be a significant issue. To increase the knowledge about drop out in different settings, this study’s objective was to quantify the association for the previously identified risk factors of age, sex, and time in treatment at a private care institution offering substance use disorder treatment in Sweden.

    Design and methods:

    This retrospective cohort study of clinical record data included all 1334 adult clients who were discharged from substance use disorder treatment between 1 January 2014, to 30 June 2022, at one privately operated treatment institution. Drop out was defined as treatment terminated before the planned end. The association between three potential risk factors and drop out was analysed in a multivariable logistic regression model. Estimates were reported as marginal risk ratios (95% confidence intervals).

    Results:

    Of 1334 discharged clients, 34% dropped out, corresponding to 38% of females and 33% of males. Approximately 52% of clients dropped out within 30 days, 42% dropped out between 30 and 89 days, and around 15% from 90 days and onwards. In the multivariable model, both time in treatment (3.08 [2.34, 3.83] for 30 to 89 days vs 90 days and 3.55 [2.72, 4.39] for <30 days vs ⩾90 days) and age (1.19 [1.14, 1.23] for one decade) showed a strong inverse association with drop out. The results did not support an association between sex and drop out (1.05 [0.89, 1.22]).

    Conclusion:

    The risk for drop out is higher earlier in the treatment and for younger clients, so to reduce the drop out at private institutional care it is important to implement extensive interventions early in the treatment programme to increase the motivation for clients, particularly younger ones, to remain in treatment.

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  • Westermark, Ann
    et al.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurology.
    Fahlström, Markus
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Molecular imaging and medical physics. Uppsala Univ, Dept Surg Sci Mol Imaging & Med Phys, Uppsala, Sweden..
    Mirza, Sadia
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurosurgery.
    Zetterling, Maria
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurosurgery.
    Kumlien, Eva
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurology.
    Latini, Francesco
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurosurgery.
    Subcortical Brain Regions Associated With Seizure Risk in Patients With IDH Mutated Diffuse Gliomas2025In: Brain and Behavior, E-ISSN 2162-3279, Vol. 15, no 4, article id e70477Article in journal (Refereed)
    Abstract [en]

    Intro: Seizure incidence in diffuse glioma ranges between 60% and 90%. This study aimed to investigate the association between seizures and diffuse glioma in subcortical and cortical brain regions, including white matter tracts.

    Methods: Adult patients with diffuse glioma at Uppsala University Hospital from 2005 to 2021 were analysed retrospectively. The relationship between tumour location in specific brain voxels and preoperative seizures was examined concerning white matter tract involvement. Tumour volumes were segmented based on T2-weighted or FLAIR MRI after spatial normalisation to standard space (MNI) and combined to create a location-specific frequency map.

    Results: Of the 93 patients meeting the inclusion criteria, 70 (75%) experienced seizures. A significant decreased risk was found in tumours present within the left fronto-mesial and dorsal voxel (A3C1S1). Increased seizure risk was found in tumours located in the left supramarginal and posterior insular voxel (A4C2S3). The voxels differed in terms of type and extent of white matter networks. Additionally, there was a difference in seizure risk and voxel associations between oligodendrogliomas and astrocytoma, with specific voxels associated with seizures identified in both groups.

    Conclusion: The study provides new insights into the epileptogenic potential of diffuse gliomas in relation to their spatial distribution, highlighting the need to analyse both cortical and subcortical localisation of tumours. The observed differences in seizure risks across brain regions underscore the need for personalised post-surgery treatment strategies and further research to understand the pathophysiology of brain tumour-related epilepsy, BTRE.

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  • Jansson, Amanda
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Ecology and Genetics. Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    Undersökning av planktonsamhällets komposition i Östersjövikar2023Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
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  • Beheshtinia, Mohammad Ali
    et al.
    Semnan Univ, Fac Engn, Dept Ind Engn, Semnan, Iran..
    Fathi, Masood
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Civil and Industrial Engineering, Industrial Engineering and Management. Univ Skövde, Sch Engn Sci, Div Intelligent Prod Syst, Skövde, Sweden.
    Ghobakhloo, Morteza
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Civil and Industrial Engineering, Industrial Engineering and Management.
    Mubarak, Muhammad Faraz
    Dalhousie Univ, Fac Comp Sci, Halifax, NS, Canada..
    Enhancing Hospital Services: Achieving High Quality Under Resource Constraints2025In: Health Services Insights, E-ISSN 1178-6329, Vol. 18, p. 1-18Article in journal (Refereed)
    Abstract [en]

    Objectives:

    This research aims to enhance the quality of hospital services by utilizing Quality Function Deployment (QFD) with a novel Multi-Dimensional House of Quality (MD-HOQ) approach. This method integrates Service Quality (SERVQUAL) analysis and considers resource constraints, such as financial and workforce limitations, to select and prioritize technical requirements effectively.

    Methods:

    The proposed MD-HOQ approach was applied to a private hospital in Tehran, Iran. Data were gathered from a sample of 8 experts and a sample of 386 patients, using 2 in-depth interviews and 4 questionnaires. The process included identifying hospital sections and determining their importance using the Analytic Hierarchy Process. Patients’ needs in each section were then identified and weighted through SERVQUAL analysis. Subsequently, technical requirements to meet these needs were listed and weighted using MD-HOQ. A mathematical model was employed to determine the optimal set of technical requirements under resource constraints.

    Results:

    Application of the MD-HOQ approach resulted in the identification of 50 patient needs across 5 hospital sections. Additionally, 40 technical requirements were identified. The highest implementation priorities were assigned to “training practitioners and nurses,” “improving the staff’s sense of responsibility,” and “using experienced specialists, physicians, and surgeons.”

    Conclusions:

    The integrated QFD approach, utilizing MD-HOQ and SERVQUAL analysis, provides a comprehensive framework for hospital managers to prioritize technical requirements effectively. By considering resource constraints and the gap between patient expectations and perceptions, this method ensures that resources are allocated to the most impactful technical requirements, leading to improved patient satisfaction and better overall hospital service quality. This approach not only enhances the quality of hospital services but also ensures efficient utilization of resources, ultimately benefiting patient satisfaction.

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  • Hebert, Felicia
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    Triphenyl phosphate's effect on neuronal morphology as an indication of developmental neurotoxicity2025Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Simply by existing, we are continuously exposed to potentially harmful chemicals present in our environment. The presence of endocrine-disrupting chemicals poses a risk, as they have the potential to interfere with systems that regulate human development and function, even at low concentrations. Triphenyl phosphate (TPHP) is a suggested developmental neurotoxicant, prevalent in house dust and plastics. Its presence in human milk and placenta raises concern about potential risks to the developing fetus. In a step to evaluate TPHP’s potential for endocrine induced developmental neurotoxicity, C17.2 cells were exposed to concentrations between 50 μM - 0.005 nM in order to cover human exposure levels. The exposure occurred for 10 days of differentiation and the cell viability, neuronal morphology (neurite outgrowth and branching) and neuronal differentiation was assessed. The treatment did not significantly affect cell viability or neuronal differentiation and morphology. However, an insignificant increase in neurite outgrowth and branching was observed, suggested to be a sign for retinoic acid receptor antagonism. Our findings indicate that TPHP is not manifesting developmental neurotoxicity by affecting the tested endpoints under the described conditions. To uncover the mechanism a broader range of endpoints should be assessed.

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  • Lindeberg, Matilda-Lo
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    The Big Four: De cellulära mekanismerna bakom de fyra främsta muterade generna inom Amyotrofisk Lateralskleros (ALS)2024Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [sv]

     Sökandet efter en fungerande behandling mot Amyotrofisk lateralskleros (ALS) har pågått sedan första gången sjukdomen beskrevs på mitten av 1800-talet. Sjukdomen karaktäriseras av en successiv degeneration av motorneuroner, men i dagsläget är verkningsmekanismerna bakom detta fortfarande okända. Kunskapsluckorna kring de bakomliggande genetiska orsakerna är stora, trots konstant pågående forskning och nya fynd. Att få förståelse för den kliniska bilden av sjukdomen utgör grunden för att framställa en behandling som angriper de rätta molekylära processerna. I denna text sammanfattas de huvudsakliga patogena mekanismerna bakom de fyra generna med starkast association till ALS; SOD1, C9orf72, TARDBP samt FUS. Där forskningen är idag har man funnit att genernas respektive grundläggande funktioner är relativt åtskilda, men att det finns somliga gemensamma patogena mekanismer. Fellokalisering och aggregatbildning är ett återkommande tema hos alla fyra generna, där störningar i bildningen av stressgranuler är gemensamt för bland annat C9orf72 och FUS.  Den sammanställda kunskapen pekar på att patogeniciteten främst härstammar från en gain-of-function (GOF)-mekanism, där toxiska ansamlingar av genprodukterna samt andra ALS-förknippade proteiner tenderar att bildas i cytoplasman av motorneuroner. Utifrån den sammanställda informationen bör framtida ALS-forskning lägga vikt vid toxiciteten hos de sjukdomsrelaterade proteinerna. Vidare bör man ha i åtanke att toxiska GOF-orsaker kan gå hand i hand med loss-of-function (LOF), då den ena inte nödvändigtvis utesluter den andra. 

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  • Pischel, Helena
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    The effects of astakine on the hemocyte differentiation in Pacifastacus leniusculus2025Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Crayfish use their native immune system to avoid infections. They produce new stem cells and blood cells (hemocytes) continuously throughout their lifetimes. The hemocytes are produced by stem cells in the hematopoietic tissue and released into the circulation. The release occurs when the cytokine astakine 1 inhibits the crosslinking between TGase in the extracellular matrix in the hematopoietic lobules. The stem cells can differentiate into different types of cells. They mainly differentiate into different types of immune cells, but also a minor population that gets transported to the brain. One of these are neuronal precursor cells that gets transported to the brain. There are several cell-type specific markers that can be used to identify the types of cells produced from the hematopoietic tissue. By injecting astakine, different methods can be used to investigate how this protein is affecting the immune response in the crayfish. In this study, RT-qPCR and RNA-FISH are used to detect different types of cells after an injection of astakine, compared to a crayfish saline injection. Samples are gathered at different time-points after the injection to investigate the effects over time. RT-qPCR measured the total mRNA expression of several cell-type specific markers. This was furthered studied with RNA-FISH to investigate the cause of the change in mRNA expression. In conclusion this study shows some results using only a few replicates, but further studies with more replicates and RNA-FISH as the main method is necessary. 

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  • Public defence: 2025-05-21 09:15 Eva von Bahr, Uppsala
    Flygare, Carl
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Electrical Engineering, Electricity.
    Watts up? Methods and perspectives on electricity consumption for energy transition2025Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    The ongoing transition to a net-zero emissions energy system is driven by what can be called a fourth wave of electrification, where fossil fuel-dependent processes are increasingly replaced by electric-powered appliances. At the same time, a substantial rise in electricity production is coming from renewable energy sources. Both developments are critical for a successful energy transition over the coming decades. A key aspect of this transition is understanding the load demand of electricity users.

    The aim of this thesis is to analyze and assess the impact of different electricity users on the local grid, focusing on their consumption behavior. Conducted in collaboration with Uppsala Municipality, the research emphasizes a public perspective, user-friendliness, and a technologically-agnostic presentation of results. Three research objectives have been pursued throughout the thesis: (1) analyzing the impact of a single user's behavior in detail on the grid, incorporating peak shaving and distributed energy resources, in addition to a broader analysis to assess multiple users through a peak load correlation analysis; (2) proposing a framework to generate typical load profiles for various users, using time series clustering and a qualitative clustering step to model their demand patterns throughout the year; and (3) designing an index to quantify and compare the flexibility potential of electricity users, based on a rankable index developed using limited information.        

    The results reveal considerable variation among users in both peak load contributions and flexibility potential. The peak load analysis and the flexibility index both identify users that could benefit from behavioral changes or offer potentially valuable flexibility to support grid stability. To test the framework of generating typical load profiles, a case study of elementary schools in Uppsala Municipality was conducted that showed that these institutions exhibited similar load patterns. The most typical load profile was rescaled to represent load variability based on the heated indoor area of an arbitrary school, showing a reasonable accuracy. These profiles can inform the selection of distributed energy resources, such as photovoltaic systems, or facilitate the co-location of users with complementary consumption patterns to minimize grid impacts.

    The methods, tools, and frameworks presented in this thesis are versatile and can serve as valuable inputs for strategic decision-making by municipalities, businesses, and other stakeholders. By providing insights into user behavior, these tools can guide focused interventions to support the continued evolution of the energy transition.

    List of papers
    1. Peak Shaving for Electric Vehicle Charging Infrastructure: A Case Study in a Parking Garage in Uppsala, Sweden
    Open this publication in new window or tab >>Peak Shaving for Electric Vehicle Charging Infrastructure: A Case Study in a Parking Garage in Uppsala, Sweden
    2022 (English)In: World Electric Vehicle Journal, E-ISSN 2032-6653, Vol. 13, no 8, article id 152Article in journal (Refereed) Published
    Abstract [en]

    The need for a more flexible usage of power is increasing due to the electrification of new sectors in society combined with larger amounts of integrated intermittent electricity production in the power system. Among other cities, Uppsala in Sweden is undergoing an accelerated transition of its vehicle fleet from fossil combustion engines to electrical vehicles. To meet the requirements of the transforming mobility infrastructure, Uppsala municipality has, in collaboration with Uppsala University, built a full-scale commercial electrical vehicle parking garage equipped with a battery storage and photovoltaic system. This paper presents the current hardware topology of the parking garage, a neural network for day-ahead predictions of the parking garage’s load profile, and a simulation model in MATLAB using rule-based peak shaving control. The created neural network was trained on data from 2021 and its performance was evaluated using data from 2022. The performance of the rule-based peak shaving control was evaluated using the predicted load demand and photovoltaic data collected for the parking garage. The aim of this paper is to test a prediction model and peak shaving strategy that could be implemented in practice on-site at the parking garage. The created neural network has a linear regression index of 0.61, which proved to yield a satisfying result when used in the rule-based peak shaving control with the parking garage’s 60 kW/137 kWh battery system. The peak shaving model was able to reduce the highest load demand peak of 117 kW by 38.6% using the forecast of a neural network.

    Place, publisher, year, edition, pages
    MDPI, 2022
    Keywords
    battery energy storage system, peak shaving, photovoltaic, rule-based, neural network, Dansmästaren
    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering
    Research subject
    Engineering Science with specialization in Electronics
    Identifiers
    urn:nbn:se:uu:diva-482051 (URN)10.3390/wevj13080152 (DOI)000848288200001 ()
    Funder
    Swedish Energy Agency, 2019-03066SweGRIDS - Swedish Centre for Smart Grids and Energy Storage, FPS24Vattenfall AB
    Available from: 2022-08-18 Created: 2022-08-18 Last updated: 2025-03-30Bibliographically approved
    2. Potential of Load Shifting in a Parking Garage with Electric Vehicle Chargers, Local Energy Production and Storage
    Open this publication in new window or tab >>Potential of Load Shifting in a Parking Garage with Electric Vehicle Chargers, Local Energy Production and Storage
    2022 (English)In: World Electric Vehicle Journal, E-ISSN 2032-6653, Vol. 13, no 9, article id 166Article in journal (Refereed) Published
    Abstract [en]

    The electrification of the transport sector is of crucial importance for a successful transition to a fossil-free society. However, the electricity grid constitutes a bottleneck. This article provides a case study based on a real-world parking garage with a smart grid infrastructure, called Dansmästaren. The analysis shows how renewable energy sources, energy storage technologies, and smart charging of electric vehicles can smooth out the load curve of the parking garage and relieve the electric grid during peak hours. Dansmästaren is located in Uppsala, Sweden, and equipped with 60 charging points for electric vehicles, a PV system, and a battery storage system. The study utilizes an energy flow model to show the potential of a realistically dimensioned smart energy system, that can benefit the parking facility in itself and the local distribution grid in a city, Uppsala, with grid capacity challenges. The results suggest that the parking garage demand on the local grid can be significantly lowered by smarter control of its relatively small battery energy storage. Moreover, further smart control strategies can decrease demand up to 60% during high load hours while still guaranteeing fully charged vehicles at departure in near future scenarios. The study also shows that peak shaving strategies can lower the maximum peaks by up to 79%. A better understanding of the potential of public infrastructures for electric vehicle charging helps to increase knowledge on how they can contribute to more sustainable cities and a fossil-free society.

    Place, publisher, year, edition, pages
    MDPI, 2022
    Keywords
    electric vehicles, renewable energy, smart charge, peak shaving, load shift, mobility house, Dansmästaren, smart cities
    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering
    Research subject
    Engineering Science with specialization in Science of Electricity
    Identifiers
    urn:nbn:se:uu:diva-484322 (URN)10.3390/wevj13090166 (DOI)000861345200001 ()
    Funder
    Vinnova, 2019-03066
    Available from: 2022-09-09 Created: 2022-09-09 Last updated: 2025-03-30Bibliographically approved
    3. The potential impact of a mobility house on a congested distribution grid – a case study in Uppsala, Sweden
    Open this publication in new window or tab >>The potential impact of a mobility house on a congested distribution grid – a case study in Uppsala, Sweden
    Show others...
    2022 (English)In: CIRED Porto Workshop 2022: E-mobility and power distribution systems, London: IEEE, 2022, article id 1442Conference paper, Published paper (Refereed)
    Abstract [en]

    The distribution grid in Uppsala, Sweden, has during the last years experienced an increasing number of hours with congestion, and as the city and number of EVs are growing new solutions are needed to not worsen this problem. Uppsala Municipality is planning a series of so-called “mobility houses” which will act as a hub for transportation while, at the same time, supporting the transition to a fossil-free energy system. Dansmästaren – the first mobility house in Uppsala – was built in 2020 and this paper describes its parking garage's main energy system parts, giving a brief introduction and analysis of each and their potential effect on Dansmästaren's grid impact. Dansmästaren has the potential to control its load on the grid, but it is essential to collect more data and analyze when flexibility is of most importance. Future studies suggest analyzing Dansmästaren's systems in more detail and developing a more advanced energy management system.

    Place, publisher, year, edition, pages
    London: IEEE, 2022
    Keywords
    advanced energy management system, mobility house, congested distribution grid, Sweden, Uppsala Municipality, fossil-free energy system, parking garage, Dansmästaren's grid impact
    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering
    Identifiers
    urn:nbn:se:uu:diva-483806 (URN)10.1049/icp.2022.0880 (DOI)
    Conference
    CIRED workshop on E-mobility and power distribution systems, 02-03 June 2022, Hybrid Conference, Porto, Portugal
    Available from: 2022-09-02 Created: 2022-09-02 Last updated: 2025-03-30Bibliographically approved
    4. Optimal scheduling of energy storage system in distribution grids using service stacking
    Open this publication in new window or tab >>Optimal scheduling of energy storage system in distribution grids using service stacking
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    2023 (English)In: 27th International Conference on Electricity Distribution (CIRED 2023), Institution of Engineering and Technology, 2023, p. 3077-3081Conference paper, Published paper (Refereed)
    Abstract [en]

    Energy storage systems are widely used for power system applications. By implementing service stacking, enhanced performance of storage systems can potentially be obtained. A scheduling tool based on linear programming was implemented to schedule a grid connected energy storage for two portfolios in separate periods. The results show that it is possible to provide additional services which generate value to the power system. By implementing a capacity loss life model the increased cycle aging is estimated. 

    Place, publisher, year, edition, pages
    Institution of Engineering and Technology, 2023
    Keywords
    linear programming, ageing, power grids, scheduling, investment
    National Category
    Energy Systems Electrical Engineering, Electronic Engineering, Information Engineering
    Identifiers
    urn:nbn:se:uu:diva-512968 (URN)10.1049/icp.2023.0907 (DOI)978-1-83953-855-1 (ISBN)
    Conference
    27th International Conference & Exhibition on Electricity Distribution (CIRED), Rome, Italy, 12-15 June, 2023
    Funder
    SweGRIDS - Swedish Centre for Smart Grids and Energy Storage, FPS3Swedish Energy AgencyVattenfall AB
    Available from: 2023-10-02 Created: 2023-10-02 Last updated: 2025-03-30Bibliographically approved
    5. Correlation as a method to assess electricity users' contributions to grid peak loads: A case study
    Open this publication in new window or tab >>Correlation as a method to assess electricity users' contributions to grid peak loads: A case study
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    2024 (English)In: Energy, ISSN 0360-5442, E-ISSN 1873-6785, Vol. 288, article id 129805Article in journal (Refereed) Published
    Abstract [en]

    Flexibility has increasingly gained attention within the field of electrification and energy transition where a common objective is to reduce the electricity consumption peaks. However, flexibility can increase the risk of grid congestion depending on where and when and it is used, thus an overall system perspective needs to be considered to ensure an effective energy transition. This paper presents a framework to assess electricity users' contributions to grid load peaks by splitting electricity consumption data into subsets based on time and temperature. The data in each subset is separately correlated with the grid load using three correlation measures to assess how the user's consumption changes at the same time as typical grid peak loads occur. The framework is implemented on four different types of business activities at Uppsala municipality in Sweden, which is a large public entity, to explore their behaviors and assess their grid peak load contributions. The results of this study conclude that all four activities generally contribute to the grid peak loads, but that differences exist. These differences are not visible without splitting the data, and not doing so can lead to unrepresentative conclusions. The presented framework can identify activities that contribute the most to unfavorable grid peaks, providing a tool for decision-makers to enable an accelerated energy transition.

    Place, publisher, year, edition, pages
    Elsevier, 2024
    Keywords
    Electricity consumption, Flexibility, Power grid peaks, Smart grids, Time series correlation analysis
    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering Energy Systems
    Identifiers
    urn:nbn:se:uu:diva-521176 (URN)10.1016/j.energy.2023.129805 (DOI)001137879700001 ()
    Available from: 2024-01-24 Created: 2024-01-24 Last updated: 2025-03-30Bibliographically approved
    6. Negative correlation peak shaving control in a parking garage in Uppsala, Sweden
    Open this publication in new window or tab >>Negative correlation peak shaving control in a parking garage in Uppsala, Sweden
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    2024 (English)In: Applied Energy, ISSN 0306-2619, E-ISSN 1872-9118, Vol. 375, article id 124082Article in journal (Refereed) Published
    Abstract [en]

    As the global transition away from fossil fuels accelerates, energy systems across the globe face a significant challenge. Given the high energy consumption of electric vehicle chargers, effective control is imperative to prevent local grid overload and congestion. In Uppsala, Sweden, a newly built parking garage includes 30 electric vehicle chargers, 62 kW solar energy production, and a 60 kW/137 kWh battery energy storage system. This paper presents a control algorithm that uses a negative correlation scheme, adjusted to the local grid load, to effectively manage the battery energy storage. To improve the performance of the algorithm, a genetic optimization method is applied to find the best feasible daily load profile for the parking garage. The results indicate that peak load and energy consumption during grid high-load hours can be significantly reduced. This also results in an 9.5−12.8% reduction in electricity distribution fees at current prices as well as a peak load reduction of up to 50 %. Increasing the battery capacity and charging/discharging power in the scenarios analysed within the study will improve the algorithm’s ability to achieve a satisfactory negative correlation between the load demand of the facility and the local grid. The proposed control algorithm lowers the facility’s impact on the local grid during high-load peak hours by utilizing the battery energy storage system at the parking garage. Moreover, it decreases the distribution fees of the facility by lowering the load peaks and shifting the electricity consumption to the morning and night.

    Place, publisher, year, edition, pages
    Elsevier, 2024
    Keywords
    Peak shaving, Negative correlation, Mobility house, Genetic algorithm, Dansmästaren
    National Category
    Engineering and Technology
    Identifiers
    urn:nbn:se:uu:diva-537029 (URN)10.1016/j.apenergy.2024.124082 (DOI)001293475300001 ()
    Funder
    Swedish Energy Agency, 2019-03066
    Available from: 2024-08-26 Created: 2024-08-26 Last updated: 2025-03-30Bibliographically approved
    7. The value of now, later, or never: assessing the value of electricity users' flexibility
    Open this publication in new window or tab >>The value of now, later, or never: assessing the value of electricity users' flexibility
    2024 (English)In: IET Conference Proceedings, 2024, Vol. 2024Conference paper, Published paper (Refereed)
    Abstract [en]

    The power grid faces a rising challenge of increasing variability due to the integration of intermittent renewable energy sources (RES) and the connection of more and new types of loads. This development heightens the risk of both capacity shortage and grid congestion, addressing the need to complement traditional grid extension, which is expensive and can take a long time. A promising approach is load flexibility, which is the ability of an electricity user to adjust its consumption during a set time interval. This study proposes a Flexibility Value Index (FVI) to rank electricity users based on the value of their potential flexibility. The FVI utilizes three indicators derived from a user's consumption and the local grid's load. The FVI is demonstrated on seven test profiles, followed by ranking five different types of users from Uppsala Municipality, Sweden, during winter working days. The study reveals a spread in the FVI, and the ranked list enables a public entity or a grid owner to focus resources on the users that can potentially realize the most flexibility. Furthermore, the FVI can be utilized on the production from RES, indicating which might be a suitable match to enhance the grid's hosting capacity.

    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering
    Identifiers
    urn:nbn:se:uu:diva-553614 (URN)10.1049/icp.2024.1948 (DOI)
    Conference
    CIRED Workshop: Increasing Distribution Network Hosting Capacity
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-03-30
    8. Data-Driven Load Profile Generation Using Time-Series Clustering: Capturing Typical Electrical Usage Variability
    Open this publication in new window or tab >>Data-Driven Load Profile Generation Using Time-Series Clustering: Capturing Typical Electrical Usage Variability
    (English)Manuscript (preprint) (Other academic)
    National Category
    Artificial Intelligence
    Identifiers
    urn:nbn:se:uu:diva-553612 (URN)
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-03-30
    9. Quantifying Flexibility From a System Perspective Using Limited Information: An Index to Rank Electricity Users' Potential Value
    Open this publication in new window or tab >>Quantifying Flexibility From a System Perspective Using Limited Information: An Index to Rank Electricity Users' Potential Value
    (English)Manuscript (preprint) (Other academic)
    National Category
    Other Electrical Engineering, Electronic Engineering, Information Engineering
    Identifiers
    urn:nbn:se:uu:diva-553613 (URN)
    Available from: 2025-03-30 Created: 2025-03-30 Last updated: 2025-03-30
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  • Schippers, Jos H. M.
    et al.
    Leibniz Inst Plant Genet & Crop Plant Res IPK, Dept Mol Genet, Seed Dev, Correns Str 3, D-06466 Gatersleben, Seeland, Germany..
    von Bongartz, Kira
    Rhein Westfal TH Aachen, Inst Biol 1, Worringerweg 1, D-52074 Aachen, Germany..
    Laritzki, Lisa
    Rhein Westfal TH Aachen, Inst Biol 1, Worringerweg 1, D-52074 Aachen, Germany..
    Frohn, Stephanie
    Leibniz Inst Plant Genet & Crop Plant Res IPK, Dept Mol Genet, Seed Dev, Correns Str 3, D-06466 Gatersleben, Seeland, Germany..
    Frings, Stephanie
    Univ Bielefeld, Fac Biol, Plant Biotechnol, Univ Str 25, D-33615 Bielefeld, Germany.;Univ Bielefeld, Ctr Biotechnol, Univ Str 27, D-33615 Bielefeld, Germany..
    Renziehausen, Tilo
    Univ Bielefeld, Fac Biol, Plant Biotechnol, Univ Str 25, D-33615 Bielefeld, Germany.;Univ Bielefeld, Ctr Biotechnol, Univ Str 27, D-33615 Bielefeld, Germany..
    Augstein, Frauke
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Organismal Biology, Physiology and Environmental Toxicology. Uppsala Univ, Linnean Ctr Plant Biol, Ullsv 24E, SE-75651 Uppsala, Sweden..
    Winkels, Katharina
    Rhein Westfal TH Aachen, Inst Biol 1, Worringerweg 1, D-52074 Aachen, Germany..
    Sprangers, Katrien
    Univ Antwerp, Dept Biol, IMPRES Res Grp, Groenenborgerlaan 171,GU613, B-2020 Antwerp, Belgium..
    Sasidharan, Rashmi
    Univ Utrecht, Inst Environm Biol, Plant Stress Resilience, Padualaan 8, NL-3584 CH Utrecht, Netherlands..
    Vertommen, Didier
    Catholic Univ Louvain, de Duve Inst, Ave Hippocrate 75, B-1200 Brussels, Belgium.;Catholic Univ Louvain, MASSPROT Platform, Ave Hippocrate 75, B-1200 Brussels, Belgium..
    Van Breusegem, Frank
    Univ Ghent, Dept Plant Biotechnol & Bioinformat, Technol Pk 71, B-9052 Ghent, Belgium.;Vlaams Inst voor Biotechnol VIB, Ctr Plant Syst Biol, Technol Pk 71, B-9052 Ghent, Belgium..
    Hartman, Sjon
    Univ Freiburg, CIBSS Ctr Integrat Biol Signalling Studies, Schanzle Str 18, D-79104 Freiburg, Germany.;Univ Freiburg, Fac Biol, Plant Environm Signalling & Dev, Schanzle Str 1, D-79104 Freiburg, Germany..
    Beemster, Gerrit T. S.
    Univ Antwerp, Dept Biol, IMPRES Res Grp, Groenenborgerlaan 171,GU613, B-2020 Antwerp, Belgium..
    Mhamdi, Amna
    Univ Ghent, Dept Plant Biotechnol & Bioinformat, Technol Pk 71, B-9052 Ghent, Belgium.;Vlaams Inst voor Biotechnol VIB, Ctr Plant Syst Biol, Technol Pk 71, B-9052 Ghent, Belgium..
    van Dongen, Joost T.
    Rhein Westfal TH Aachen, Inst Biol 1, Worringerweg 1, D-52074 Aachen, Germany..
    Schmidt-Schippers, Romy R.
    Univ Bielefeld, Fac Biol, Plant Biotechnol, Univ Str 25, D-33615 Bielefeld, Germany.;Univ Bielefeld, Ctr Biotechnol, Univ Str 27, D-33615 Bielefeld, Germany..
    ERFVII-controlled hypoxia responses are in part facilitated by MEDIATOR SUBUNIT 25 in Arabidopsis thaliana2024In: The Plant Journal, ISSN 0960-7412, E-ISSN 1365-313X, Vol. 120, no 2, p. 748-768Article in journal (Refereed)
    Abstract [en]

    Flooding impairs plant growth through oxygen deprivation, which activates plant survival and acclimation responses. Transcriptional responses to low oxygen are generally associated with the activation of group VII ETHYLENE-RESPONSE FACTOR (ERFVII) transcription factors. However, the exact mechanisms and molecular components by which ERFVII factors initiate gene expression are not fully elucidated. Here, we show that the ERFVII factors RELATED TO APETALA 2.2 (RAP2.2) and RAP2.12 cooperate with the Mediator complex subunit AtMED25 to coordinate gene expression under hypoxia in Arabidopsis thaliana. Respective med25 knock-out mutants display reduced low-oxygen stress tolerance. AtMED25 physically associates with a distinct set of hypoxia core genes and its loss partially impairs transcription under hypoxia due to decreased RNA polymerase II recruitment. Association of AtMED25 with target genes requires the presence of ERFVII transcription factors. Next to ERFVII protein stabilisation, also the composition of the Mediator complex including AtMED25 is potentially affected by hypoxia stress as shown by protein-complex pulldown assays. The dynamic response of the Mediator complex to hypoxia is furthermore supported by the fact that two subunits, AtMED8 and AtMED16, are not involved in the establishment of hypoxia tolerance, whilst both act in coordination with AtMED25 under other environmental conditions. We furthermore show that AtMED25 function under hypoxia is independent of ethylene signalling. Finally, functional conservation at the molecular level was found for the MED25-ERFVII module between A. thaliana and the monocot species Oryza sativa, pointing to a potentially universal role of MED25 in coordinating ERFVII-dependent transcript responses to hypoxia in plants.

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  • Stenbacka, Susanne
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Human Geography.
    Disability, rurality and spatial competence: on the importance of embodied knowledge and supportive contexts2024In: Fennia, ISSN 0015-0010, Vol. 202, no 2, p. 212-226Article in journal (Refereed)
    Abstract [en]

    In this article, I investigate the interaction between the rural environment and disability to explore how place can be a resource in processes of participation and belonging. The aim is to explain how individuals experiencing disability make use of, give meaning to, evaluate, and negotiate their surroundings. The embodied experiences of individuals living in rural places are at the centre of the study that this work is based on. The empirical material includes in-depth interviews with 15 men and women experiencing either a physical or a neuropsychiatric impairment. The analysis focuses upon the environmental-social interface. The article argues that the concept of spatial competence offers a relatively open entrance for studying enabling spaces and identifying factors contributing to the well-being of individuals and places. Spatial competence is understood as a process that emphasises agency and the ability to navigate social and material environments. Departing from the participants' elaborations and reflexivity with regard to their local places, I argue that the physical environment, social networks and local welfare structures constitute pillars in the development of spatial competence. Welfare structures are explicitly addressed, for example regarding social support in everyday life or material support in the case of remodelling a home. These structures are also implicitly present in narratives on excursions, outdoor activities or social contexts initiated or supported by the public sector or civil society. A conclusion is that the development of spatial competence intersects with a functioning welfare society.

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  • Lupu, Irina-Elena
    et al.
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Grainger, David E.
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Kirschnick, Nils
    Univ Munster, European Inst Mol Imaging, Munster, Germany.;Max Planck Inst Mol Biomed, Munster, Germany..
    Weischer, Sarah
    Univ Munster, Cells Mot Interfac Ctr, Imaging Network, Munster, Germany..
    Zhao, Erica
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Martinez-Corral, Ines
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Immunology, Genetics and Pathology, Vascular Biology.
    Schoofs, Hans
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Immunology, Genetics and Pathology, Vascular Biology.
    Vanhollebeke, Marie
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Jones, Grace
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Godwin, Jonathan
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Forrow, Aden
    Univ Oxford, Math Inst, Oxford, England..
    Lahmann, Ines
    Max Delbruck Ctr Mol Med, Dev Biol Signal Transduct, Berlin, Germany.;Charite Univ Med Berlin, Neurowissenschaftl Forschungzentrum, NeuroCure Cluster Excellence, Berlin, Germany..
    Riley, Paul R.
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Zobel, Thomas
    Univ Munster, Cells Mot Interfac Ctr, Imaging Network, Munster, Germany..
    Alitalo, Kari
    Wihuri Res Inst, Helsinki, Finland.;Univ Helsinki, Translat Canc Med Program, Biomed Helsinki, Helsinki, Finland..
    Mäkinen, Taija
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Immunology, Genetics and Pathology, Vascular Biology. Wihuri Res Inst, Helsinki, Finland..
    Kiefer, Friedemann
    Univ Munster, European Inst Mol Imaging, Munster, Germany.;Max Planck Inst Mol Biomed, Munster, Germany..
    Stone, Oliver A.
    Univ Oxford, Dept Physiol Anat & Genet, Oxford, England.;Univ Oxford, Inst Dev & Regenerat Med, Oxford, England..
    Direct specification of lymphatic endothelium from mesenchymal progenitors2025In: Nature Cardiovascular Research, ISSN 2731-0590, Vol. 4, no 1, p. 45-63Article in journal (Refereed)
    Abstract [en]

    During embryogenesis, endothelial cells (ECs) are generally described to arise from a common pool of progenitors termed angioblasts, which diversify through iterative steps of differentiation to form functionally distinct subtypes of ECs. A key example is the formation of lymphatic ECs (LECs), which are thought to arise largely through transdifferentiation from venous endothelium. Opposing this model, here we show that the initial expansion of mammalian LECs is primarily driven by the in situ differentiation of mesenchymal progenitors and does not require transition through an intermediate venous state. Single-cell genomics and lineage-tracing experiments revealed a population of paraxial mesoderm-derived Etv2+Prox1+ progenitors that directly give rise to LECs. Morphometric analyses of early LEC proliferation and migration, and mutants that disrupt lymphatic development supported these findings. Collectively, this work establishes a cellular blueprint for LEC specification and indicates that discrete pools of mesenchymal progenitors can give rise to specialized subtypes of ECs.

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  • Yousefi Taemeh, Sara
    et al.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology, Genetics and Genomics. Ferdowsi Univ Mashhad, Res Inst Biotechnol, Stem Cell Biol & Regenerat Med Res Grp, Mashhad, Iran.
    Dehdilani, Nima
    Ferdowsi Univ Mashhad, Res Inst Biotechnol, Stem Cell Biol & Regenerat Med Res Grp, Mashhad, Iran.;Ferdowsi Univ Mashhad, Fac Vet Med, Div Biotechnol, Mashhad, Iran..
    Goshayeshi, Lena
    Ferdowsi Univ Mashhad, Res Inst Biotechnol, Stem Cell Biol & Regenerat Med Res Grp, Mashhad, Iran..
    Kress, Clémence
    Univ Lyon 1, Univ Lyon, INSERM, INRAE,Stem Cell & Brain Res Inst,U1208,USC1361, Bron, France..
    Rival-Gervier, Sylvie
    Univ Lyon 1, Univ Lyon, INSERM, INRAE,Stem Cell & Brain Res Inst,U1208,USC1361, Bron, France..
    Montillet, Guillaume
    Univ Lyon 1, Univ Lyon, INSERM, INRAE,Stem Cell & Brain Res Inst,U1208,USC1361, Bron, France..
    Ebrahimi Vishki, Rouzbeh
    Ferdowsi Univ Mashhad, Res Inst Biotechnol, Stem Cell Biol & Regenerat Med Res Grp, Mashhad, Iran..
    Pain, Bertrand
    Univ Lyon 1, Univ Lyon, INSERM, INRAE,Stem Cell & Brain Res Inst,U1208,USC1361, Bron, France..
    Dehghani, Hesam
    Ferdowsi Univ Mashhad, Res Inst Biotechnol, Stem Cell Biol & Regenerat Med Res Grp, Mashhad, Iran.;Ferdowsi Univ Mashhad, Fac Vet Med, Div Biotechnol, Mashhad, Iran.;Ferdowsi Univ Mashhad, Fac Vet Med, Dept Basic Sci, Mashhad, Iran..
    Strain-specific variations in the culture of chicken primordial germ cells2025In: Scientific Reports, E-ISSN 2045-2322, Vol. 15, no 1, article id 11858Article in journal (Refereed)
    Abstract [en]

    Efficient long-term cultivation of chicken primordial germ cells (cPGCs) is essential for various avian research and biotechnology applications. Our study aimed to address the challenge of inconsistent culture success by investigating strain-specific variations and optimizing culture conditions using two distinct media: Ovotransferrin-enriched medium (OTM) and chicken serum-supplemented medium (CSM). We demonstrated that each chicken strain has unique nutritional requirements, with Hubbard cPGCs thriving in OTM and Bovans cPGCs favoring CSM. This strain-specific variation was effective in derivation and proliferation rates and the expression of stem cell-specific markers such as POU5F3/OCT4 and NANOG. Furthermore, our study confirmed the sustained germ cell identity of long-term cultured cPGCs through the expression of DAZL, DDX4, and EMA1 germ cell markers. We also showed that cultured cPGCs retained their migratory abilities and transfectability, successfully generating G0 germline chimeras and G1 transgenic Bovans chickens. These findings highlight the importance of optimized culture conditions depending on the genotype to enhance the viability and genetic stability of cPGCs, paving the way for more effective genetic modifications and conservation strategies in avian species.

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  • Nilsson, Julia
    Uppsala University, Disciplinary Domain of Science and Technology, Biology, Biology Education Centre.
    Metagenomic analyses of worldwide Thamnolia lichens reveal new photo- and mycobiont lineages that correlate with temperature2025Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Lichen are a symbiosis between a mycobiont and a photobiont. Sanger sequencing is a popular method to identify the photobiont species, though it has recently been suggested that it tends to only amplify the most common genotype. Using next generation sequencing (NGS) has revealed that the lichen thalli often include more than one photobiont. The majority of discoveries in lichen biology, including both the photo- and mycobiont, are made using the internal transcribed spacer (ITS). It is a good tool for distinguishing between species but makes sequence alignment difficult. This study proposes that using the whole rDNA operon, including both the conserved 18- and 28S as well as the ITS, will resolve this issue. Therefore, this study examines whether metagenomic data sequenced at 30X can be used to retrieve the rDNA operon of photo- and mycobionts in Thamnolia lichen, as well as if it is able to identify more than one photobiont. It also examines which photobionts associate with Thamnolia lichens and if there is a correlation between them as well as between them and the temperature in which they grew. Further, if the identified photobionts are found in other mycobiont species beyond Thamnolia. To establish this, 150 Thamnolia samples from all continents of the world except Africa were collected between 1994-2023, their DNA was extracted and sequenced. The rDNA operon of both the photo- and mycobiont of 39 of the samples, including the 18S, ITS and 28S, were retrieved through metagenomic assembly using metaSPAdes. With the obtained data, phylogenies, maps, one-way ANOVAs and Fisher’s Exact test were made. With this method, six Thamnolia mycobiont lineages were discovered: A, B, C1, C2, C3 and C4, through their distribution it could be established that they had different regions of origin and were impacted by the average temperature in which they grew. Five Trebouxia photobiont lineages were discovered: ‘pink’, ‘red’, ‘yellow’, ‘green’ and ‘blue’, from their distribution the same conclusions regarding origins and temperature could be established, as for the mycobionts. Fisher’s Exact test also showed that the lineages have specific associations with each other. The results indicate that the Thamnolia and Trebouxia lineages have spatial and thermal patterns, meaning that their distribution differs depending on origin and temperature, as well as certain associations with each other and that this is worth investigating further to establish the true depiction of reality. 

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  • Johansdotter, Afrodite
    et al.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences.
    Dahlberg, Emma
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences.
    “Kan jag lita på dig?”: En kvalitativ litteraturstudie om vuxna patienters och anhörigas upplevelser av tillit till ambulanspersonalen2025Independent thesis Advanced level (degree of Master (One Year)), 10 credits / 15 HE creditsStudent thesis
    Abstract [sv]

    Bakgrund: Prehospital vård är en central del av akutsjukvården och bidrar till trygghet isamhället. Ambulanssjuksköterskan möter patienter i akuta och ofta stressfyllda situationerdär tillit spelar en avgörande roll för vårdrelationen. För att skapa tillit krävs både medicinskkompetens och en förmåga att kommunicera lugnt och empatiskt. Tidigare forskning om tillitär begränsad och utrycker ett behov av att närmare studera patientens upplevelse av tillit. Syfte: Syftet med studien är att beskriva vuxna patienters och deras anhörigas upplevelser avtillit till ambulanspersonalen i det prehospitala vårdmötet. Metod: Kvalitativ litteraturstudiemed systematisk ansats med 19 inkluderade artiklar som analyserats med en latentinnehållsanalys. Resultat: Patienters tillit till ambulanspersonalen kan börja redan vidlarmcentralens besked om att hjälp är på väg och stärks av snabb ankomst och professionelltbemötande. Ambulanspersonalens medicinska kompetens är avgörande för tryggheten,medan bristande kunskap kan leda till misstro. Ett empatiskt och tydligt bemötande stärkerrelationen och ökar tilliten, medan dålig kommunikation och ifrågasättande kan minskaförtroendet. Slutsats: Tilliten till ambulanspersonalen är avgörande för patientens upplevelseav trygghet och vårdkvalitet i det prehospitala mötet. Studien visar att faktorer somprofessionellt bemötande, medicinsk kompetens, tydlig kommunikation och en respektfullvårdrelation bidrar till att stärka denna tillit. När patienter och anhöriga känner sig lyssnadepå, informerade och bekräftade skapas en vårdmiljö där tilliten kan utvecklas, vilket i sin turunderlättar samverkan mellan patient och ambulanspersonal. Vidare forskning bör undersökahur olika utbildningsnivåer hos ambulanspersonalen påverkar patientens upplevelse av tillitsamt om specifika utbildningsinsatser kan stärka patientens upplevelse av tillit.

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  • Wallin, Eveli
    et al.
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences.
    Pixell Rubarth, Maria
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Public Health and Caring Sciences.
    Effekten av musikterapi som en icke-farmakologisk smärtlindringsmetod vid postoperativ vård2025Independent thesis Advanced level (degree of Master (One Year)), 10 credits / 15 HE creditsStudent thesis
    Abstract [en]

    Background: Postoperative pain is a common issue that can affect the patient's physical and psychological well-being and prolong recovery time. Despite the availability of both pharmacological and non-pharmacological pain relief methods, the under-treatment of postoperative pain remains a widespread problem. Music therapy has been highlighted as a potential non-pharmacological method to complement standard pain management and enhance patient well-being. 

    Aim: The aim of this literature review was to examine the effect of music therapy as a non-pharmacological complement to pain relief in postoperative pain management. 

    Method: A systematic literature review was conducted using PubMed and CINAHL with specific inclusion criteria, such as peer-reviewed quantitative studies in English. A total of 20 articles were included and assessed based on quality criteria för relevance and reliability. A narrative synthesis was used to analyze and categorize the result. 

    Results: Music therapy demonstrated positive effects by reducing pain intensity, lowering anxiety levels, and improving sleep quality. Patients who listened to music postoperatively often had lower heart rates and blood pressure, as well as a reduced need for analgesic medication. Personalized music therapy also improved the patient's experience of care. Challenges in implementering music therapy were identified, such as a lack of knowledge and guidelines within healthcare settings.

    Conclusion: Music therapy is an effective and side-effect-free method to complement pharmacological pain management postoperatively. Integrating music into healthcare can reduce pain perception, lower anxiety level, and enhance recovery. Despite its positive effects further research is needed to evaluate long-term outcomes and develop clear guidelines for implementation in clinical practice. 

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  • Maioli, Andrea
    et al.
    Politecn Milan, Milan, Italy..
    Quinones, Kevin Alessandro
    Politecn Milan, Milan, Italy..
    Ahmed, Saad
    Georgia Inst Technol, Atlanta, GA USA..
    Alizai, Muhammad Hamad
    Lahore Univ Management Sci, Lahore, Punjab, Pakistan..
    Mottola, Luca
    Uppsala University, Disciplinary Domain of Science and Technology, Technology, Department of Electrical Engineering, Networked Embedded Systems. Politecn Milan, Milan, Italy..
    Dynamic Voltage and Frequency Scaling for Intermittent Computing2025In: ACM transactions on sensor networks, ISSN 1550-4867, E-ISSN 1550-4859, Vol. 21, no 2, article id 34Article in journal (Refereed)
    Abstract [en]

    We present hardware/software techniques to intelligently regulate supply voltage and clock frequency of intermittently computing devices. These devices rely on ambient energy harvesting to power their operation and small capacitors as energy buffers. Statically setting their clock frequency fails to capture the unique relations these devices expose between capacitor voltage, energy efficiency at a given operating frequency, and the corresponding operating range. Existing dynamic voltage and frequency scaling techniques are also largely inapplicable due to extreme energy scarcity and peculiar hardware features. We introduce two hardware/software co-designs that accommodate the distinct hardware features and function within a constrained energy envelope, offering varied tradeoffs and functionalities. Our experimental evaluation combines tests on custom-manufactured hardware and detailed emulation experiments. The data gathered indicate that our approaches result in up to 3.75x reduced energy consumption and 12x swifter execution times compared to the considered baselines, all while utilizing smaller capacitors to accomplish identical workloads.

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  • Janssen, Ralf
    Uppsala University, Disciplinary Domain of Science and Technology, Earth Sciences, Department of Earth Sciences, Palaeobiology.
    Early expression of chelicerate hedgehog orthologs and its bearing on the homology of arthropod head segments2025In: DISCOVER DEVELOPMENTAL BIOLOGY, ISSN 3059-3247, Vol. 235, no 1, article id 2Article in journal (Refereed)
    Abstract [en]

    Evolution and development of the arthropod head are heavily debated topics often referred to as "The arthropod head problem" (AHP) or the "Endless dispute". One aspect of the AHP concerns the evolutionary origin and homology of the most anterior head segments, the pre-gnathal segments (PGS), that are associated with the tripartite brain of arthropods. It has been suggested that the PGS could have evolved independently from the segments that build the rest of the arthropod body. One argument supporting this hypothesis is that the PGS are patterned by an initial transverse stripe of hedgehog (hh)-expression that splits once or twice, giving (in the case of double splitting) raise to the three PGS in distantly related arthropods such as the fly Drosophila melanogaster and the spider Parasteatoda tepidariorum. It has been implied that this splitting-event may recapitulate evolution of these segments, i.e. the splitting of an initial anterior body unit into three, or at least that the single splitting may represent a remnant of this process. In this paper, I show that two-fold splitting of an initial anterior hh-stripe is not conserved in chelicerates or even spiders. Instead, I find that a single splitting event correlated to the development of the most anterior two segments, the protocerebral and the deuterocerebral segment, is conserved among arthropods as a whole. There are, however, deviations from this pattern including a third or even fourth consecutive head segment, or even hh-splitting in more posterior segments.

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  • Czesla, S.
    et al.
    Thuringer Landessternwarte Tautenburg, Sternwarte 5, D-07778 Tautenburg, Germany..
    Nail, F.
    Univ Amsterdam, Anton Pannekoek Inst Astron, NL-1090 GE Amsterdam, Netherlands..
    Lavail, A.
    Univ Toulouse, Inst Rech Astrophys & Planetol, CNRS, IRAP,UMR 5277, 14 Ave Edouard Belin, F-31400 Toulouse, France..
    Cont, D.
    Ludwig Maximilians Univ Munchen, Univ Sternwarte, Scheinerstr 1, D-81679 Munich, Germany.;Exzellenzcluster ORIGINS, Boltzmannstr 2, D-85748 Garching, Germany..
    Nortmann, L.
    Georg August Univ, Inst Astrophys & Geophys, Friedrich Hund Pl 1, D-37077 Gottingen, Germany..
    Lesjak, F.
    Georg August Univ, Inst Astrophys & Geophys, Friedrich Hund Pl 1, D-37077 Gottingen, Germany..
    Rengel, M.
    Max Planck Inst Sonnensystemforsch, Justus Von Liebig Weg 3, D-37077 Gottingen, Germany..
    Boldt-Christmas, Linn
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Observational Astrophysics.
    Shulyak, D.
    Inst Astrofis Andaluci CSIC, C Glorieta Astron S-N, E-18008 Granada, Spain..
    Seemann, U.
    Georg August Univ, Inst Astrophys & Geophys, Friedrich Hund Pl 1, D-37077 Gottingen, Germany.;European Southern Observ, Munich, Germany..
    Schneider, P. C.
    Univ Hamburg, Hamburger Sternwarte, Gojenbergsweg 112, D-21029 Hamburg, Germany..
    Hatzes, A.
    Thuringer Landessternwarte Tautenburg, Sternwarte 5, D-07778 Tautenburg, Germany..
    Kochukhov, Oleg
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Observational Astrophysics.
    Piskunov, Nikolai
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Observational Astrophysics. Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Space Plasma Physics.
    Reiners, A.
    Georg August Univ, Inst Astrophys & Geophys, Friedrich Hund Pl 1, D-37077 Gottingen, Germany..
    Wilson, D. J.
    Univ Colorado Boulder, Lab Atmospher & Space Phys, 600 UCB, Boulder, CO 80303 USA..
    Yan, F.
    Univ Sci & Technol China, Dept Astron, Hefei 230026, Peoples R China..
    The overflowing atmosphere of WASP-121 b High-resolution He I λ10833 transmission spectroscopy with VLT/CRIRES+2024In: Astronomy and Astrophysics, ISSN 0004-6361, E-ISSN 1432-0746, Vol. 692, article id A230Article in journal (Refereed)
    Abstract [en]

    Transmission spectroscopy is a prime method to study the atmospheres of extrasolar planets. We obtained a high-resolution spectral transit time series of the hot Jupiter WASP-121 b with CRIRES+ to study its atmosphere via transmission spectroscopy of the He I λ10833 triplet lines. Our analysis shows a prominent He I λ10833 absorption feature moving along with the planetary orbital motion, which shows an observed, transit-averaged equivalent width of approximately 30 mÅ, a slight redshift, and a depth of about 2%, which can only be explained by an atmosphere overflowing its Roche lobe. We carried out 3D hydrodynamic modeling to reproduce the observations, which favors asymmetric mass loss with a more pronounced leading tidal tail, possibly also explaining observational evidence for additional absorption stationary in the stellar rest frame. A trailing tail is not detectable. From our modeling, we derived estimates of ≥2 × 1013 g s−1 for the stellar and 5.4 × 1012 g s−1 for the planetary mass loss rate, which is consistent with X-ray and extreme-ultraviolet (XUV) driven mass loss in WASP-121 b.

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  • Hamurcu, Munibe
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Human Geography.
    Brottslighetens sista utpost? Hur stadsplanering förändrar Fittjas framtid2025Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
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  • Prip, Frederik
    et al.
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Lamy, Philippe
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark..
    Lindskrog, Sia Viborg
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Strandgaard, Trine
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Nordentoft, Iver
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark..
    Birkenkamp-Demtröder, Karin
    Birkbak, Nicolai Juul
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Kristjansdottir, Nanna
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Kjaer, Asbjorn
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Andreasen, Tine G.
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Ahrenfeldt, Johanne
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Pedersen, Jakob Skou
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Rasmussen, Asta Mannstaedt
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Hermann, Gregers G.
    Univ Copenhagen, Herlev Hosp, Dept Urol, Copenhagen, Denmark..
    Mogensen, Karin
    Univ Copenhagen, Herlev Hosp, Dept Urol, Copenhagen, Denmark..
    Petersen, Astrid C.
    Aalborg Univ Hosp, Dept Pathol, Aalborg, Denmark..
    Hartmann, Arndt
    Friedrich Alexander Univ Erlangen Nuremberg, Univ Hosp Erlangen, Inst Pathol, Comprehens Canc Ctr Erlangen EMN, Erlangen, Germany..
    Grimm, Marc-Oliver
    Jena Univ Hosp, Dept Urol, Jena, Germany..
    Horstmann, Marcus
    Univ Hosp Essen, Dept Urol, Essen, Germany..
    Nawroth, Roman
    Tech Univ Munich, Dept Urol, Klinikum Rechts Isar, Munich, Germany..
    Segersten, Ulrika
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Urology.
    Sikic, Danijel
    Friedrich Alexander Univ Erlangen Nuremberg, Univ Hosp Erlangen, Dept Urol & Pediat Urol, Erlangen, Germany..
    van Kessel, Kim E. M.
    Erasmus Univ, Med Ctr, Erasmus MC Canc Inst, Dept Urol, Rotterdam, Netherlands.;Amphia Ziekenhuis, Dept Urol, Breda, Netherlands..
    Zwarthoff, Ellen C.
    Erasmus Univ, Med Ctr, Erasmus MC Canc Inst, Dept Pathol, Rotterdam, Netherlands..
    Maurer, Tobias
    Univ Hamburg Eppendorf, Dept Urol, Hamburg, Germany.;Univ Hamburg Eppendorf, Martini Klin, Hamburg, Germany..
    Simic, Tatjana
    Univ Belgrade, Inst Med & Clin Biochem, Fac Med, Belgrade, Serbia..
    Malmström, Per-Uno
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Urology.
    Malats, Nuria
    Spanish Natl Canc Res Ctr CNIO, Genet & Mol Epidemiol Grp, Madrid, Spain.;CIBERONC, Madrid, Spain..
    Jensen, Jorgen Bjerggaard
    Aarhus Univ, Dept Clin Med, Aarhus, Denmark.;Aarhus Univ Hosp, Dept Urol, Aarhus, Denmark..
    Real, Francisco X.
    CIBERONC, Madrid, Spain.;Spanish Natl Canc Res Ctr CNIO, Epithelial Carcinogenesis Grp, Madrid, Spain.;Univ Pompeu Fabra, Med & Life Sci Dept, Barcelona, Spain..
    Dyrskjot, Lars
    Aarhus Univ Hosp, Dept Mol Med, Aarhus, Denmark.;Aarhus Univ, Dept Clin Med, Aarhus, Denmark..
    Comprehensive genomic characterization of early-stage bladder cancer2025In: Nature Genetics, ISSN 1061-4036, E-ISSN 1546-1718, Vol. 57, no 1, p. 115-125Article in journal (Refereed)
    Abstract [en]

    Understanding the molecular landscape of nonmuscle-invasive bladder cancer (NMIBC) is essential to improve risk assessment and treatment regimens. We performed a comprehensive genomic analysis of patients with NMIBC using whole-exome sequencing (n = 438), shallow whole-genome sequencing (n = 362) and total RNA sequencing (n = 414). A large genomic variation within NMIBC was observed and correlated with different molecular subtypes. Frequent loss of heterozygosity in FGFR3 and 17p (affecting TP53) was found in tumors with mutations in FGFR3 and TP53, respectively. Whole-genome doubling (WGD) was observed in 15% of the tumors and was associated with worse outcomes. Tumors with WGD were genomically unstable, with alterations in cell-cycle-related genes and an altered immune composition. Finally, integrative clustering of multi-omics data highlighted the important role of genomic instability and immune cell exhaustion in disease aggressiveness. These findings advance our understanding of genomic differences associated with disease aggressiveness in NMIBC and may ultimately improve patient stratification.

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  • Navarrete, Jaime
    et al.
    Parc Sanit Sant Joan De Deu, Teaching Res & Innovat Unit, St Boi De Llobregat, Spain.;CIBER Epidemiol & Publ Hlth CIBERESP, Madrid, Spain..
    Rodriguez-Freire, Carla
    Parc Sanit Sant Joan De Deu, Teaching Res & Innovat Unit, St Boi De Llobregat, Spain..
    Sanabria-Mazo, Juan P.
    Parc Sanit Sant Joan De Deu, Teaching Res & Innovat Unit, St Boi De Llobregat, Spain.;CIBER Epidemiol & Publ Hlth CIBERESP, Madrid, Spain.;Autonomous Univ Barcelona, Fac Psychol, Dept Basic Dev & Educ Psychol, Bellaterra, Spain..
    Martinez-Rubio, David
    Univ Europea Valencia, Fac Hlth Sci, Dept Psychol, Valencia, Spain.;Univ Lleida, Dept Nursing & Physiotherapy, Lleida, Spain..
    McCracken, Lance
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Psychology.
    Gallego, Ana
    Univ Jyvaskyla, Fac Educ & Psychol, Dept Psychol, Jyvaskyla, Finland.;Univ Jyvaskyla, Sch Wellbeing, JYU Well, Jyvaskyla, Finland..
    Sundström, Felicia
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Psychology.
    Serrat, Mayte
    Vall dHebron Hosp, Unitat Expertesa Sindromes Sensibilitzacio Cent, Serv Reumatol, Barcelona, Spain..
    Alonso, Jordi
    CIBER Epidemiol & Publ Hlth CIBERESP, Madrid, Spain.;Hosp Mar Res Inst Barcelona IMIM, Hlth Serv Res Unit, Barcelona, Spain.;Univ Pompeu Fabra, Dept Med & Life Sci, Barcelona, Spain..
    Feliu-Soler, Albert
    CIBER Epidemiol & Publ Hlth CIBERESP, Madrid, Spain.;Autonomous Univ Barcelona, Fac Psychol, Dept Clin & Hlth Psychol, Barcelona, Spain..
    Nieto, Ruben
    Univ Oberta Catalunya, Fac Hlth Sci, eHlth Lab Res Grp, Barcelona, Spain..
    Luciano, Juan V.
    Parc Sanit Sant Joan De Deu, Teaching Res & Innovat Unit, St Boi De Llobregat, Spain.;CIBER Epidemiol & Publ Hlth CIBERESP, Madrid, Spain.;Autonomous Univ Barcelona, Fac Psychol, Dept Clin & Hlth Psychol, Barcelona, Spain..
    Psychometric examination of the Multidimensional Psychological Flexibility Inventory Short Form (MPFI-24) and the Psy-Flex Spanish versions in individuals with chronic pain2025In: European Journal of Pain, ISSN 1090-3801, E-ISSN 1532-2149, Vol. 29, no 1, article id e4704Article in journal (Refereed)
    Abstract [en]

    Background:

    Acceptance and Commitment Therapy (ACT) has been found to be beneficial for individuals dealing with chronic pain. The theoretical mechanisms of change proposed by ACT are based on the Hexaflex model. To comprehensively reflect this model, the Multidimensional Psychological Flexibility Inventory (MPFI) and Psy-Flex have been developed. The study aimed to adapt the MPFI-24 and the Psy-Flex for Spanish-speaking populations with chronic pain and to examine their dimensionality, internal consistency, convergent validity and incremental validity.

    Methods:

    This cross-sectional study involved 309 Spanish-speaking adults with chronic pain who completed an online survey. The majority of the participants were women (88.3%). The ages ranged from 18 to 79 years.

    Results:

    Factor analysis showed that the Spanish version of the MPFI-24 has 12 factors, consisting of six flexibility and six inflexibility factors, similar to the original version, but lacking second-order general factors. The Psy-Flex demonstrated a single-factor structure, maintaining the general factor of psychological flexibility seen in the original version. The MPFI-24 showed good internal consistency and adequate convergent validity, with the exception of the Acceptance and Experiential Avoidance subscales. The Psy-Flex showed good internal consistency and convergent validity. Notably, both the MPFI-24 and Psy-Flex scores significantly explained additional variance in psychological distress beyond other ACT-related measures of Hexaflex processes; however, only the Psy-Flex explained pain interference.

    Conclusions:

    The Spanish adaptations of the MPFI-24 and Psy-Flex are valid and reliable instruments for assessing the Hexaflex model processes in Spanish-speaking adults with chronic pain.

    Significance Statement:

    Practitioners and researchers in chronic pain will find the Spanish versions of the MPFI-24 and the Psy-Flex here, along with recommendations for their use and scoring based on a robust psychometric rationale. It should be noted that these measures surpass the Chronic Pain Acceptance Questionnaire (CPAQ) and the Psychological Inflexibility in Pain Scale (PIPS), which are considered gold standards in chronic pain assessment.

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  • Hallbäck, Erika Tång
    et al.
    Univ Gothenburg, Inst Biomed, Sahlgrenska Acad, Dept Infect Dis, Gothenburg, Sweden.;Sahlgrens Univ Hosp, Dept Clin Microbiol, Gothenburg, Region Vastra G, Sweden..
    Björkman, Jonas T.
    Reg Skane, Dept Clin Genet Pathol & Mol Diagnost, Dept Clin Genet Pathol & Mol Diagnost, Lund, Region Vastra G, Sweden..
    Dyrkell, Fredrik
    1928 Diagnostics, Gothenburg, Sweden..
    Welander, Jenny
    Linköping Univ, Dept Biomed & Clin Sci, Linköping, Sweden.;Linköping Univ, Dept Biomed & Clin Sci, Linköping, Sweden..
    Fang, Hong
    Karolinska Univ Hosp, Dept Pathol & Canc Diagnost, Med Diagnost Karolinska, Stockholm, Sweden..
    Sylvin, Isak
    Univ Gothenburg, Sahlgrenska Acad, Bioinformat & Data Ctr, Core Facil, Gothenburg, Sweden..
    Kaden, René
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Clinical Microbiology.
    Eilers, Hinnerk
    Umeå Univ Hosp, Lab Med, Clin Microbiol, Umeå, Sweden..
    Strand, Anna Söderlund
    Off Med Serv, Clin Microbiol Infect Prevent & Control, Lund, Region Skane, Sweden..
    Mernelius, Sara
    Linköping Univ, Dept Clin & Expt Med, Linköping, Sweden..
    Berglind, Linda
    Lagos, Amaya Campillay
    Örebro Univ, Fac Med & Hlth, Dept Lab Med, Clin Microbiol, Örebro, Sweden..
    Engstrand, Lars
    Karolinska Inst, Ctr Translat Microbiome Res, Dept Microbiol Tumor & Cell Biol, Solna, Sweden..
    Sikora, Per
    Univ Gothenburg, Sahlgrenska Acad, Bioinformat & Data Ctr, Core Facil, Gothenburg, Sweden..
    Mölling, Paula
    Örebro Univ, Fac Med & Hlth, Dept Lab Med, Clin Microbiol, Örebro, Sweden..
    Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden2025In: Microbial Genomics, E-ISSN 2057-5858, Vol. 11, no 1, article id 001331Article in journal (Refereed)
    Abstract [en]

    Background. National epidemiological investigations of microbial infections greatly benefit from the increased information gained by whole- genome sequencing (WGS) in combination with standardized approaches for data sharing and analysis.

    Aim. To evaluate the quality and accuracy of WGS data generated by different laboratories but analysed by joint pipelines to reach a national surveillance approach.

    Methods. A national methicillin- resistant Staphylococcus aureus (MRSA) collection of 20 strains was distributed to nine participating laboratories that performed in- house procedures for WGS. Raw data were shared and analysed by three pipelines: 1928 Diagnostics, JASEN (GMS pipeline) and CLC- Genomics Workbench. The outcomes were compared according to quality, correct strain identification and genetic distances.

    Results. One isolate contained intraspecies contamination and was excluded from further analysis. The mean sequencing depth varied between sites and technologies. However, all analysis methods identified 12 strains that belonged to one of five outbreak clusters. The cut- off definition was set to <10 allele differences for core genome multilocus sequence typing (cgMLST) and <20 genetic differences for SNP analysis in a pairwise comparison.

    Conclusions. MRSA isolates, which are whole genome sequenced by different laboratories and analysed using the same bioinformatic pipelines, yielded comparable results for outbreak clustering for both cgMLST and SNP, using the 1928 analysis pipeline. In this study, JASEN was best suited to analyse Illumina data and CLC to analyse within respective technology. In the future, real- time sharing of data and harmonized analysis within the Genomic Medicine Sweden consortium will further facilitate investigations of outbreaks and transmission routes.

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  • Turner, D. J.
    et al.
    Michigan State Univ, Phys & Astron Dept, E Lansing, MI 48823 USA.;Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Giles, P. A.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Romer, A. K.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Pilling, J.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Lingard, T. K.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England.;Univ Portsmouth, Inst Cosmol & Gravitat, Dennis Sciama Bldg, Portsmouth PO1 3FX, England..
    Wilkinson, R.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Hilton, M.
    Univ Witwatersrand Johannesburg, Sch Phys, Private Bag 3, ZA-2050 Johannesburg, South Africa..
    Upsdell, E. W.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Al-Serkal, R.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Cheng, T.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England.;Imperial Coll London, Blackett Lab, Astrophys Grp, Prince Consort Rd, London SW7 2AZ, England..
    Eappen, R.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Rooney, P. J.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Bhargava, S.
    Observ Cote Azur, 96 Bd Observ, F-06300 Nice, France..
    Collins, C. A.
    Liverpool John Moores Univ, Astrophys Res Inst, Liverpool Sci Pk,146 Brownlow Hill, Liverpool L3 5RF, England..
    Mayers, J.
    Univ Sussex, Dept Phys & Astron, Brighton BN1 9QH, England..
    Miller, C.
    Univ Michigan, Dept Astron, Ann Arbor, MI 48109 USA..
    Nichol, R. C.
    Univ Surrey, Sch Phys & Maths, Guildford GU2 7XH, England..
    Sahlén, Martin
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Theoretical Astrophysics.
    Viana, P. T. P.
    Univ Porto, Inst Astrofis & Ciencias Espaco, CAUP, Rua Estrelas, P-4150762 Porto, Portugal.;Univ Porto, Fac Ciencias, Dept Fis & Astron, Rua Campo Alegre 687, P-4169007 Porto, Portugal..
    The XMM Cluster Survey: automating the estimation of hydrostatic mass for large samples of galaxy clusters - I. Methodology, validation, and application to the SDSSRM-XCS sample2025In: Monthly notices of the Royal Astronomical Society, ISSN 0035-8711, E-ISSN 1365-2966, Vol. 537, no 2, p. 1404-1429Article in journal (Refereed)
    Abstract [en]

    We describe features of the X-ray: Generate and Analyse (XGA) open-source software package that have been developed tofacilitate automated hydrostatic mass (Mhydro ) measurements from XMM X-ray observations of clusters of galaxies. This includesdescribing how XGA measures global, and radial, X-ray properties of galaxy clusters. We then demonstrate the reliability ofXGA by comparing simple X-ray properties, namely the X-ray temperature and gas mass, with published values presented bythe XMM Cluster Survey (XCS), the Ultimate XMM eXtragaLactic survey project (XXL), and the Local Cluster SubstructureSurvey (LoCuSS). XGA measured values for temperature are, on average, within 1 per cent of the values reported in the literaturefor each sample. XGA gas masses for XXL clusters are shown to be ∼10 per cent lower than previous measurements (though thedifference is only significant at the ∼ 1.8σ level), LoCuSS R2500 and R500 gas mass re-measurements are 3 per cent and 7 per centlower, respectively (representing 1.5σ and 3.5σ differences). Like-for-like comparisons of hydrostatic mass are made to LoCuSSresults, which show that our measurements are 10±3 per cent (19±7 per cent) higher for R2500 (R500 ). The comparison betweenR500 masses shows significant scatter. Finally, we present new Mhydro measurements for 104 clusters from the Sloan DigitalSky Survey (SDSS) DR8 redMaPPer XCS sample (SDSSRM-XCS). Our SDSSRM-XCS hydrostatic mass measurements are ingood agreement with multiple literature estimates, and represent one of the largest samples of consistently measured hydrostaticmasses. We have demonstrated that XGA is a powerful tool for X-ray analysis of clusters; it will render complex-to-measureX-ray properties accessible to non-specialists.

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  • Berrios, Andromeda
    et al.
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Sociology.
    Kalabis, Kevin
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Sociology.
    Mellan ideal och praktik: En studie om policydokument och hur dessa påverkar social integration bland anställda hos RFSU.2025Independent thesis Basic level (degree of Bachelor), 10 credits / 15 HE creditsStudent thesis
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  • Public defence: 2025-05-16 10:15 Lecture Hall 2, Uppsala
    Sundberg, Elin
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Social Sciences, Department of Economics.
    Essays in Labor Economics: Gender, Careers, and Family Decisions2025Doctoral thesis, monograph (Other academic)
    Abstract [en]

    Essay I: This paper examines the career/family trade-off at labor market entry using unique data on job preferences among Swedish law graduates. Using ranked job applications, I document gender differences in employment and location preferences: women are less geographically mobile and less likely to pursue private-sector career paths. I focus in particular on cohabitation status at labor market entry to investigate how early family ties may constrain preferences. Cohabiting applicants—regardless of gender—are less mobile, reflecting short-run career constraints. However, cohabitation at labor market entry does not predict long-run gender differences in earnings. Instead, career trajectories begin to diverge with the timing of parenthood, underscoring the unequal career costs of family formation.    

    Essay II (with Seema Jayachandran, Lea Nassal, Matthew J. Notowidigdo, Marie Paul and Heather Sarsons): Many couples face a trade-off between advancing one spouse’s career or the other’s. We study this trade-off using administrative data from Germany and Sweden and find that when couples move across commuting zones, men’s earnings increase more than women’s. To distinguish between men's greater earnings potential and a gender norm that prioritizes men’s careers, we examine how the patterns differ depending on whether the man or the woman has higher potential earnings. We then estimate a household decision-making model in which households can—and empirically do—place more weight on the man’s income. 

    Essay III (with Dana Scott): We investigate whether the expansion of remote work following the COVID-19 pandemic helped mitigate child penalties in Sweden. A household labor supply model predicts that work-from-home opportunities reduce the child penalty only when primarily accessible to mothers, with little effect if both parents have equal access. Consistent with this, our empirical results show that remote work has had limited impact on mothers’ relative earnings, employment, hours, and wages. 

    Essay IV (with Daniel Avdic, Arizo Karimi and Anna Sjögren): This paper studies how parental time investments affect children's human capital development. We exploit Sweden’s 1995 parental leave reform in an RD-DD framework and find that, while average GPA effects are limited, the reform reduced school-leaving grades for sons of non-college educated fathers and increased intergenerational skill correlations. We find no support for mental health, fertility, or role model channels. Instead, the results suggest that increased separation risk in disadvantaged families may have reduced paternal time investments. 

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  • Arnqvist, Elias
    et al.
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Applied Nuclear Physics.
    Oberstedt, Stephan
    Al-Adili, Ali
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Applied Nuclear Physics.
    Fontana, Cristiano Lino
    Borella, Alessandro
    Rossa, Riccardo
    Geerts, Wouter
    Macías, Miguel
    Vidali, Marzio
    Oberstedt, Andreas
    Lantz, Mattias
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Applied Nuclear Physics.
    Characterization of CLLBC scintillation detector response to γ-rays and neutrons2025In: Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, ISSN 0168-9002, E-ISSN 1872-9576, Vol. 1076, article id 170470Article in journal (Refereed)
    Abstract [en]

    The dual-mode elpasolite scintillation material CLLBC (Cs2LiLaBr4.8Cl1.2:Ce) is capable of measuring both𝛾-rays and neutrons. The neutron detection capability spans from thermal energies up to about 10 MeV,making these detectors attractive options for studying prompt fission neutron spectra (PFNS). In this work, acomprehensive characterization of CLLBC detectors is performed. Three CLLBC detectors were characterized,in addition to three LaBr3:Ce and two LaBr3:Ce,Sr for comparison. For the best-performing CLLBC detector,the results indicate an energy resolution of 3.7% at 𝐸𝛾 = 662 keV and an intrinsic timing resolution of1.2 ns (FWHM) above 𝐸𝛾 = 1 MeV using 60Co. A 𝛾-neutron separation figure-of-merit of 2.7 is obtainedby means of pulse-shape discrimination. Tagged neutron time-of-flight measurements were conducted usinga 241Am9Be neutron source, by coincident detection of the 4.44 MeV 𝛾-ray and the neutron, to determinethe intrinsic neutron detection efficiency between 2–6 MeV. Neutron detection efficiencies of about 0.2% forthe 6Li(n,t)4He reaction and 1% for three types of (n,n′) reactions were obtained. Two of three investigatedCLLBC detectors exhibit an energy peak asymmetry, resulting in worse performance, indicating scintillatorquality issues and motivating further investigation. Future studies are anticipated using the 252Cf(sf) promptfission neutron spectrum to determine neutron efficiencies for a wider range of neutron energies. Althoughobserved in a previous study, neutron detection via 35Cl(n,p)35S was not identified in this work but is plannedto be determined using quasi-monoenergetic neutrons generated at the JRC MONNET facility.

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  • Holappa, Tim
    Uppsala University, Disciplinary Domain of Humanities and Social Sciences, Faculty of Law, Department of Law.
    Barns rättigheter i svensk och norsk planerings-lagstiftning: en komparativ studie2025In: Förvaltningsrättslig Tidskrift, ISSN 0015-8585, no 2, p. 193-220Article in journal (Refereed)
    Abstract [sv]

    Barns och ungas livsvillkor påverkas av hur våra städer och byggda miljöer utformas. När barnkonventionen inkorporerades 2020 lyftes därför bland annat vikten av att beakta barns rättigheter och intressen i planläggning av mark- och vattenanvändning. I samband med inkorporeringen betonades därtill att det även efter att barnkonventionen blivit lag fanns ett behov av fortsatt vägledning och ett systematiskt transformeringsarbete av konventionens artiklar i svensk lagstiftning. Trots detta har några initiativ till att införa bestämmelser om barns rättigheter i den svenska plan- och bygglagstiftningen inte tagits. Till skillnad från den svenska lagstiftningen innehåller den norska plan- och bygglagstiftningen krav på beaktande av barns rättigheter och intressen. Mot denna bakgrund undersöks och jämförs i artikeln hur barns rättigheter reglerats i svensk respektive norsk plan- och bygglagstiftning. Därtill diskuteras om den svenska regleringen bör influeras av den norska regleringen. I artikeln visas att det råder oklarheter kring om och hur barns rättigheter ska beaktas vid planering i Sverige medan den norska lagstiftaren tydligt tagit ställning till att barns och ungas rättigheter och intressen ska beaktas vid planering i Norge. Den norska lagstiftningen, som består av allmänt hållna bestämmelser, kompletteras med nationella riktlinjer och vägledningar, vilket innebär att förväntningarna på den kommunala planeringen är betydligt tydligare i Norge än i Sverige. För att tydliggöra intentionerna med hur barnkonventionen ska förstås vid planläggning bör därför den svenska lagstiftaren överväga att införa bestämmelser om barns och ungas rättigheter och intressen i plan- och bygglagstiftningen. Den norska lagstiftningen kan med fördel fungera som inspiration.

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  • Dorri, Samira
    et al.
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Nyqvist, Olle
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Palisaitis, Justinas
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Vorobiev, Alexei
    Uppsala University, Disciplinary Domain of Science and Technology, Physics, Department of Physics and Astronomy, Materials Physics. Inst Laue Langevin, CS 20156, 71 Ave Martyrs, F-38042 Grenoble 9, France.
    Devishvili, Anton
    Inst Laue Langevin, CS 20156, 71 Ave Martyrs, F-38042 Grenoble 9, France..
    Sandström, Per
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Persson, Per O. Å.
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Ghafoor, Naureen
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Eriksson, Fredrik
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Birch, Jens
    Linköping Univ, Dept Phys Chem & Biol IFM, Thin Film Phys Div, SE-58183 Linköping, Sweden..
    Artificial superlattices with abrupt interfaces by monolayer-controlled growth kinetics during magnetron sputter epitaxy, case of hexagonal CrB2/TiB2 heterostructures2025In: Materials & design, ISSN 0264-1275, E-ISSN 1873-4197, Vol. 251, article id 113661Article in journal (Refereed)
    Abstract [en]

    Artificial superlattices exhibit exceptional electronic, magnetic, optical, and mechanical properties which make them unique candidates for applications in a broad range of technologies. A common key feature of superlattices is the need for atomically abrupt interfaces. However, superlattices comprised of materials with different properties, such as melting points and diffusivities, pose large challenges for achieving high crystal quality of both constituents with abrupt interfaces. By employing ion-assisted magnetron sputter epitaxy, we present an innovative solution to this problem with utilizing a unique combination of thermal radiation and kinetic energy that enable sufficient adatom mobility for epitaxial growth of both materials. The research was implemented for the case of CrB2/TiB2 heteroepitaxial superlattices, as neutron interference mirrors, wherein the constituents’ melting points differ by 1100 K. Ion-induced intermixing was avoided by commencing growth of each TiB2 and CrB2 layer by up to 3 unit cells (uc) without ion assistance, forming a buffer to protect the interface during the ion-assisted growth of the remainder of each layer. Heteroepitaxial superlattice growth with interface widths σCrB2 ∼1 uc and σTiB2 ∼2 uc was confirmed for different modulation periods. More than 3000 uc (∼1 µm) thick superlattices with abrupt interfaces were demonstrated for neutron mirror applications.

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  • Holappa, Tim
    et al.
    KTH, Lantmäteri – fastighetsvetenskap och geodesi.
    Leviner, Pernilla
    Juridiska institutionen, Stockholms unversitet.
    Fattigdom, social barnavård och barns rättigheter: en rättsvetenskaplig analys2025In: Socialvetenskaplig tidskrift, ISSN 1104-1420, E-ISSN 2003-5624, Vol. 31, no 3-4, p. 317-335Article in journal (Refereed)
    Abstract [en]

    According to the UN Convention on the Rights of the Child, children have the right to a stan-dard of living adequate for their development. The responsibility to realise this lies primarily with parents, but states have a duty to support parents and an ultimate responsibility to protect child-ren from harm. Yet, studies show that children in Sweden are affected by economic vulnerability, and that the right to financial support is conditional, leading to a risk that children’s needs are not being met. This article looks at how the social services in Sweden should deal with child poverty. From a legal perspective, it examines what applies in situations where children do not have their basic needs met and where parents are not granted financial support. An important question is whether there are legal prerequisites to take children into care in such situations. It is shown that there are no explicit legal provisions legitimising taking children into care solely on the basis of poverty. Further, case law of the European Court of Human Rights, and statements from the UN Committee on the Rights of the Child, indicate that taking children into care because of poverty is a disproportionate restriction of children’s rights. However, the national legal framework is unclear. Children are to be protected from harm, but parents who do not meet the conditions set out by the social services are denied financial support. Overall, this means that there is a risk that children will be taken into care as a result of poverty, even though the needs could be met through financial support. The article discusses the need for legal clarifications and reforms in order to better protect children’s needs and rights.

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  • Holappa, Tim
    Stockholms universitet, Juridiska institutionen.
    Om socialnämndens olika roller som biståndsgivare och hyresvärd: En kommentar till JO:s beslut den 18 maj 2017, dnr 416-20162018In: Nordisk socialrättslig tidskrift, ISSN 2000-6500, Vol. 17-18, p. 201-206Article in journal (Other academic)
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  • Public defence: 2025-05-16 09:00 Trippelrummet, Navet/SciLifeLab, Uppsala
    Albinsson, Bo
    Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology.
    Tick-Borne Encephalitis: Novel Methods for Improved Serological Diagnostics2025Doctoral thesis, comprehensive summary (Other academic)
    Abstract [en]

    Tick-borne encephalitis (TBE) is caused by the tick-borne encephalitis virus (TBEV) and is mainly transmitted to humans through bites from infected Ixodes ticks. TBE is a growing public health challenge in Europe, including Sweden, and is a reportable disease in at least 37 European countries.

    TBEV can infect the central nervous system, causing symptoms from mild illness to severe disease or death. It may lead to lasting sequelae and reduced quality of life, although asymptomatic cases are likely common.

    TBEV is traditionally classified into three subtypes: European, Siberian, and Far Eastern. It belongs to the Flaviviridae family and the Orthoflavivirus genus and is the only endemic vector-borne flavivirus in Sweden.

    TBE vaccines are generally effective, though vaccine failures occur. Sweden lacks a national TBE vaccine register and seroprevalence studies are limited.

    TBEV-specific antibody detection in serum or cerebrospinal fluid is the most common diagnostic method. Antibody detection is generally reliable but occasionally limited by cross-reactivity and false positives. Diagnosing TBE in vaccinated individuals is even more challenging. Traditional serological methods cannot distinguish infection-induced from vaccine-induced antibodies. Viral RNA detection has low clinical sensitivity.

    This thesis aimed to improve TBE diagnostics by developing and evaluating new methods and to expand knowledge of TBEV, including vaccination data, through a seroprevalence study in Sweden.

    In Paper I, we developed and validated a method to differentiate between antibodies caused by infection and those from vaccination. Antibody patterns in TBE-infected patients were compared with those in vaccinated individuals to demonstrate the concept. In Paper II, we applied the method to samples from suspected vaccine failure cases. In Paper III, we evaluated the performance of a commercial TBEV test in a European multi-laboratory study. In Paper IV, we investigated TBEV seroprevalence and vaccination coverage in collaboration with eight Swedish regions. Our findings include vaccination and infection rates, estimated totals, and evidence that over 90% of TBEV infections go undiagnosed.

    In conclusion, this thesis presents improvements in TBEV diagnostics and new data on the seroprevalence of TBEV in Sweden, including vaccination data and information of the ratio between TBEV infections and reported TBE cases.

    List of papers
    1. Distinction between serological responses following tick-borne encephalitis virus (TBEV) infection vs vaccination, Sweden 2017
    Open this publication in new window or tab >>Distinction between serological responses following tick-borne encephalitis virus (TBEV) infection vs vaccination, Sweden 2017
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    2018 (English)In: Eurosurveillance, ISSN 1025-496X, E-ISSN 1560-7917, Vol. 23, no 3, p. 2-7, article id 17-00838Article in journal (Refereed) Published
    Abstract [en]

    Tick-borne encephalitis virus (TBEV) is an important European vaccine-preventable pathogen. Discrimination of vaccine-induced antibodies from those elicited by infection is important. We studied anti-TBEV IgM/IgG responses, including avidity and neutralisation, by multiplex serology in 50 TBEV patients and 50 TBEV vaccinees. Infection induced antibodies reactive to both whole virus (WV) and non-structural protein 1 (NS1) in 48 clinical cases, whereas 47 TBEV vaccinees had WV, but not NS1 antibodies, enabling efficient discrimination of infection/vaccination.

    National Category
    Infectious Medicine
    Identifiers
    urn:nbn:se:uu:diva-343857 (URN)10.2807/1560-7917.ES.2018.23.3.17-00838 (DOI)000423449200001 ()
    Available from: 2018-03-02 Created: 2018-03-02 Last updated: 2025-03-25Bibliographically approved
    2. Antibody responses to tick-borne encephalitis virus non-structural protein 1 and whole virus antigen-a new tool in the assessment of suspected vaccine failure patients.
    Open this publication in new window or tab >>Antibody responses to tick-borne encephalitis virus non-structural protein 1 and whole virus antigen-a new tool in the assessment of suspected vaccine failure patients.
    2019 (English)In: Infection Ecology & Epidemiology, E-ISSN 2000-8686, E-ISSN 2000-8686, Vol. 9, no 1, p. 1696132-, article id 1696132Article in journal (Refereed) Published
    Abstract [en]

    We report a new tool for improved serological diagnostics in suspected tick-borne encephalitis (TBE) vaccine failure cases. Due to an increase in the incidence of disease as well as the number of vaccinees, specific and simplified diagnostic methods are needed. Antibody responses to TBE-virus (TBEV) non-structural protein 1 (NS1) are detectable post TBEV infection but not post vaccination. We have used samples from 14 previously confirmed Swedish TBEV vaccine failure patients to study antibody responses against NS1 and whole virus antigens, respectively. Our conclusion is that the detection of antibodies directed to TBEV NS1 antigen is a useful tool to considerably simplify and improve the quality in investigations regarding suspected TBEV infection in vaccinated patients.

    Place, publisher, year, edition, pages
    London: Taylor & Francis Group, 2019
    Keywords
    Tick-borne encephalitis (TBE), antibody detection, diagnostics, serology, vaccine breakthrough, vaccine failure, vaccine-preventable diseases, vaccines and immunization
    National Category
    Clinical Laboratory Medicine Infectious Medicine
    Identifiers
    urn:nbn:se:uu:diva-542433 (URN)10.1080/20008686.2019.1696132 (DOI)31839903 (PubMedID)
    Available from: 2024-11-12 Created: 2024-11-12 Last updated: 2025-03-25
    3. Multi laboratory evaluation of ReaScan TBE IgM rapid test, 2016 to 2017
    Open this publication in new window or tab >>Multi laboratory evaluation of ReaScan TBE IgM rapid test, 2016 to 2017
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    2020 (English)In: Eurosurveillance, ISSN 1025-496X, E-ISSN 1560-7917, Vol. 25, no 12, p. 27-36, article id 1900427Article in journal (Refereed) Published
    Abstract [en]

    Tick-borne encephalitis (TBE) is a potentially severe neurological disease caused by TBE virus (TBEV). In Europe and Asia, TBEV infection has become a growing public health concern and requires fast and specific detection. Aim: In this observational study, we evaluated a rapid TBE IgM test, ReaScan TBE, for usage in a clinical laboratory setting. Methods: Patient sera found negative or positive for TBEV by serological and/or molecular methods in diagnostic laboratories of five European countries endemic for TBEV (Estonia, Finland, Slovenia, the Netherlands and Sweden) were used to assess the sensitivity and specificity of the test. The patients' diagnoses were based on other commercial or quality assured in-house assays, i.e. each laboratory's conventional routine methods. For specificity analysis, serum samples from patients with infections known to cause problems in serology were employed. These samples tested positive for e.g. Epstein-Barr virus, cytomegalovirus and Anaplasma phagocytophilum, or for flaviviruses other than TBEV, i.e. dengue, Japanese encephalitis, West Nile and Zika viruses. Samples from individuals vaccinated against flaviviruses other than TBEV were also included. Altogether, 172 serum samples from patients with acute TBE and 306 TBE IgM negative samples were analysed. Results: Compared with each laboratory's conventional methods, the tested assay had similar sensitivity and specificity (99.4% and 97.7%, respectively). Samples containing potentially interfering antibodies did not cause specificity problems. Conclusion: Regarding diagnosis of acute TBEV infections, ReaScan TBE offers rapid and convenient complementary IgM detection. If used as a stand-alone, it can provide preliminary results in a laboratory or point of care setting.

    Place, publisher, year, edition, pages
    EUR CENTRE DIS PREVENTION & CONTROL, 2020
    National Category
    Infectious Medicine
    Identifiers
    urn:nbn:se:uu:diva-409834 (URN)10.2807/1560-7917.ES.2020.25.12.1900427 (DOI)000522148900005 ()32234120 (PubMedID)
    Available from: 2020-06-04 Created: 2020-06-04 Last updated: 2025-03-25Bibliographically approved
    4. Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019
    Open this publication in new window or tab >>Seroprevalence of tick-borne encephalitis virus and vaccination coverage of tick-borne encephalitis, Sweden, 2018 to 2019
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    2024 (English)In: Eurosurveillance, ISSN 1025-496X, E-ISSN 1560-7917, Vol. 29, no 2, article id 2300221Article in journal (Refereed) Published
    Abstract [en]

    Background: In Sweden, information on seroprevalence of tick -borne encephalitis virus (TBEV) in the population, including vaccination coverage and infection, is scattered. This is largely due to the absence of a national tick -borne encephalitis (TBE) vaccination registry, scarcity of previous serological studies and use of serological methods not distinguishing between antibodies induced by vaccination and infection. Furthermore, the number of notified TBE cases in Sweden has continued to increase in recent years despite increased vaccination.

    Aim: The aim was to estimate the TBEV seroprevalence in Sweden.

    Methods: In 2018 and 2019, 2,700 serum samples from blood donors in nine Swedish regions were analysed using a serological method that can distinguish antibodies induced by vaccination from antibodies elicited by infection. The regions were chosen to reflect differences in notified TBE incidence.

    Results: The overall seroprevalence varied from 9.7% (95% confidence interval (CI): 6.6-13.6%) to 64.0% (95% CI: 58.3- 69.4%) between regions. The proportion of vaccinated individuals ranged from 8.7% (95% CI: 5.8-12.6) to 57.0% (95% CI: 51.2-62.6) and of infected from 1.0% (95% CI: 0.2-3.0) to 7.0% (95% CI: 4.5-10.7). Thus, more than 160,000 and 1,600,000 individuals could have been infected by TBEV and vaccinated against TBE, respectively. The mean manifestation index was 3.1%.

    Conclusion: A difference was observed between low- and high -incidence TBE regions, on the overall TBEV seroprevalence and when separated into vaccinated and infected individuals. The estimated incidence and manifestation index argue that a large proportion of TBEV infections are not diagnosed.

    Place, publisher, year, edition, pages
    European Centre for Disease Control and Prevention (ECDC), 2024
    National Category
    Infectious Medicine Public Health, Global Health and Social Medicine
    Identifiers
    urn:nbn:se:uu:diva-526883 (URN)10.2807/1560-7917.ES.2024.29.2.2300221 (DOI)001198133800003 ()38214080 (PubMedID)
    Funder
    Region UppsalaSwedish Research Council, VR: 2018-02569
    Available from: 2024-04-23 Created: 2024-04-23 Last updated: 2025-03-25Bibliographically approved
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    UUThesis_B-Albinsson-2025