Open this publication in new window or tab >>Univ Calif Irvine, Sch Biol Sci, Dept Dev & Cell Biol, Irvine, CA 92697 USA.;Univ Calif Irvine, Sue & Bill Gross Stem Cell Res Ctr, Irvine, CA 92697 USA..
Univ Calif Irvine, Sch Biol Sci, Dept Dev & Cell Biol, Irvine, CA 92697 USA.;Univ Calif Irvine, Dept Med, Math Computat & Syst Biol, Irvine, CA 92697 USA..
Univ Calif Irvine, Inst Clin & Translat Sci, Irvine, CA 92697 USA.;Univ Calif Irvine, Dept Med, Sch Med, Irvine, CA 92697 USA..
Karolinska Inst, Dept Med Solna, Dermatol & Venereol Div, Stockholm, Sweden.;Karolinska Inst, Ctr Mol Med, Stockholm, Sweden.;Karolinska Inst, Ming Wai Lau Ctr Reparat Med, Stockholm, Sweden..
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Dermatology and Venereology. Karolinska Inst, Dept Med Solna, Dermatol & Venereol Div, Stockholm, Sweden.;Karolinska Inst, Ctr Mol Med, Stockholm, Sweden..
Wellcome Sanger Inst, Wellcome Genome Campus, Cambridge, England.;Newcastle Univ, Biosci Inst, Newcastle Upon Tyne, England.;Newcastle Hosp NHS Fdn Trust, Dept Dermatol, Newcastle Upon Tyne, England.;Newcastle Hosp NHS Fdn Trust, NIHR Newcastle Biomed Res Ctr, Newcastle Upon Tyne, England..
Univ Calif Irvine, Dept Math, Irvine, CA 92697 USA.;Univ Calif Irvine, NSF Simons Ctr Multiscale Cell Fate Res, Irvine, CA 92697 USA.;Univ Calif Irvine, Sch Biol Sci, Dept Dev & Cell Biol, Irvine, CA 92697 USA..
Med Univ Vienna, Dept Dermatol, Skin & Endothelium Res Div SERD, Vienna, Austria..
Helmholtz Munich, Inst Computat Biol, Neuherberg, Germany.;German Ctr Lung Res DZL, Inst Lung Hlth & Immun, Helmholtz Munich, Munich, Germany..
Univ Calif Irvine, NSF Simons Ctr Multiscale Cell Fate Res, Irvine, CA 92697 USA.;Univ Calif Irvine, Sue & Bill Gross Stem Cell Res Ctr, Irvine, CA 92697 USA.;Univ Calif Irvine, Sch Med, Dept Biol Chem, Irvine, CA 92697 USA..
Univ Michigan, Dept Dermatol, Ann Arbor, MI USA.;Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI USA.;Univ Michigan, Sch Publ Hlth, Dept Biostat, Ann Arbor, MI USA.;Univ Michigan, Ctr Stat Genet, Sch Publ Hlth, Ann Arbor, MI USA..
Kings Coll London, Sch Basic & Med Biosci, Fac Life Sci & Med, Ctr Gene Therapy & Regenerat Med, London, England.;European Mol Biol Lab, Directors Res Unit, Heidelberg, Germany..
Univ Michigan, Dept Dermatol, Ann Arbor, MI USA..
Univ Calif Irvine, NSF Simons Ctr Multiscale Cell Fate Res, Irvine, CA 92697 USA.;Univ Calif Irvine, Sch Biol Sci, Dept Dev & Cell Biol, Irvine, CA 92697 USA.;Univ Calif Irvine, Sue & Bill Gross Stem Cell Res Ctr, Irvine, CA 92697 USA.;Univ Calif Irvine, Dept Dev & Cell Biol, 45 Hlth Sci Rd,Room 3018, Irvine, CA 92697 USA..
Karolinska Inst, Dept Cell & Mol Biol, Stockholm, Sweden..
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2023 (English)In: Journal of Investigative Dermatology, ISSN 0022-202X, E-ISSN 1523-1747, Vol. 143, no 9, p. 1667-1677Article, review/survey (Refereed) Published
Abstract [en]
Single-cell technologies have become essential to driving discovery in both basic and translational investigative dermatology. Despite the multitude of available datasets, a central reference atlas of normal human skin, which can serve as a reference resource for skin cell types, cell states, and their molecular signatures, is still lacking. For any such atlas to receive broad acceptance, participation by many investigators during atlas construction is an essential prerequisite. As part of the Human Cell Atlas project, we have assembled a Skin Biological Network to build a consensus Human Skin Cell Atlas and outline a roadmap toward that goal. We define the drivers of skin diversity to be considered when selecting sequencing datasets for the atlas and list practical hurdles during skin sampling that can result in data gaps and impede comprehensive representation and technical considerations for tissue processing and computational analysis, the accounting for which should minimize biases in cell type enrichments and exclusions and decrease batch effects. By outlining our goals for Atlas 1.0, we discuss how it will uncover new aspects of skin biology.
Place, publisher, year, edition, pages
Elsevier, 2023
National Category
Dermatology and Venereal Diseases
Identifiers
urn:nbn:se:uu:diva-521503 (URN)10.1016/j.jid.2023.03.1679 (DOI)001063569900001 ()37612031 (PubMedID)
Funder
Swedish Research Council, 2022-01059Swedish Cancer Society, 21 1821 PjForte, Swedish Research Council for Health, Working Life and WelfareSwedish Research Council
2024-01-292024-01-292024-01-29Bibliographically approved