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Publications (10 of 317) Show all publications
Jönsson, H., Korenyushkin, A., van Geel, J. J. .., Eisses, B., de Vries, E. G. .., Schröder, C. P., . . . Kullberg, J. (2025). Automated whole-body PET/CT lesion tracking for lesion-wise response evaluation in metastatic breast cancer. In: Ruidan Su; Alejandro F. Frangi; Yudong Zhang (Ed.), Proceedings of 2024 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024): . Paper presented at 5th International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024), Nov. 19-21, 2024, Manchester, UK. Singapore: Springer
Open this publication in new window or tab >>Automated whole-body PET/CT lesion tracking for lesion-wise response evaluation in metastatic breast cancer
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2025 (English)In: Proceedings of 2024 International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024) / [ed] Ruidan Su; Alejandro F. Frangi; Yudong Zhang, Singapore: Springer, 2025Conference paper, Published paper (Refereed)
Abstract [en]

Breast cancer responds heterogeneously to treatment. This study evaluated the efficacy of image registration-based lesion tracking for assessing lesion-wise response in metastatic breast cancer (MBC). [18F]FDG PET/CT images from 15 patients with MBC from the multi-center IMPACT-MBC study were analyzed. Manual segmentation identified 644 lesions in baseline scans and 804 lesions in 2-week post-treatment scans. A deformable image registration method, validated for whole-body PET/CT scans of patients with cancer, was applied. Lesion tracking was performed using spatial overlap resulting from within-subject image registration, yielding a precision of 0.93 ± 0.07, a sensitivity of 0.87 ± 0.17, and an F1 score of 0.89 ± 0.10. Performance was consistent across lesion sites and lesion count-based disease burden. Sensitivity decreased for lesions under 1 mL. Image registration direction did not affect results. Between-subject registration enabled quantitative visualization and analysis of metabolic response patterns in bone lesions across the cohort. Results demonstrate the potential for automated, accurate lesion-wise response assessment, which may improve treatment monitoring in MBC.

Place, publisher, year, edition, pages
Singapore: Springer, 2025
Series
Lecture Notes in Electrical Engineering, ISSN 1876-1100, E-ISSN 1876-1119 ; 1372
National Category
Radiology and Medical Imaging Cancer and Oncology
Identifiers
urn:nbn:se:uu:diva-551444 (URN)10.1007/978-981-96-3863-5_26 (DOI)2-s2.0-105003260989 (Scopus ID)
Conference
5th International Conference on Medical Imaging and Computer-Aided Diagnosis (MICAD 2024), Nov. 19-21, 2024, Manchester, UK
Available from: 2025-03-06 Created: 2025-03-06 Last updated: 2025-06-17Bibliographically approved
Ene, P., Svensson, M. K., Strand, R., Kullberg, J., Ahlström, H., Larsson, A. & Lind, L. (2025). Causal effects of obesity on estimated glomerular filtration rate: a Mendelian randomization and image data analysis study. Clinical Kidney Journal, 18(5), Article ID sfaf116.
Open this publication in new window or tab >>Causal effects of obesity on estimated glomerular filtration rate: a Mendelian randomization and image data analysis study
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2025 (English)In: Clinical Kidney Journal, ISSN 2048-8505, E-ISSN 2048-8513, Vol. 18, no 5, article id sfaf116Article in journal (Refereed) Published
Abstract [en]

BACKGROUND: Obesity has been associated with onset and progression of chronic kidney disease (CKD) but causal relationship remains uncertain. This study investigated how obesity causally affects estimated glomerular filtration rate.

METHODS: Cross-sectional and magnetic resonance imaging (MRI) data analyses were performed within the Prospective Investigation of Obesity, Energy, and Metabolism (POEM) study (502 participants, all aged 50 years). Additionally Mendelian randomization was performed using published summary data. Outcomes were creatinine- and cystatin C-based eGFR. Body mass index (BMI) and waist circumference (WC) were used as exposure variables in the cross-sectional and Mendelian randomization analyses. In the imaging data analyses, eGFR was regressed non-parametrically on tissue volume for each 3D voxel and visualized as a correlation "Imiomics" map.

RESULTS: Negative correlations were shown between cystatin C-based eGFR and BMI [beta = -0.190 (95% CI: -0.280 to -0.100)] and WC [beta = -0.160 (95% CI: -0.250 to -0.060)] in an adjusted model. In contrast, a positive association was found for creatinine-based eGFR [BMI beta = 1.20 (95% CI: 0.030 to 0.210) and WC beta = 0.160 (95% CI: 0.070 to 0.260)]. Similar patterns were found using MRI analysis (Imiomics map). Mendelian randomization implied a negative causal effect of obesity-related measures on cystatin C-based eGFR [BMI beta = -0.031 (95% CI: -0.037 to -0.026) and WC beta = -0.038 (95% CI: -0.045 to -0.031)], but no statistically significant effect was found for creatinine-based eGFR.

CONCLUSION: This study suggests a causal negative effect of obesity on cystatin C-based, but not creatinine-based eGFR. These findings warrant further research regarding estimations of kidney function when assessing obesity and CKD.

Place, publisher, year, edition, pages
Oxford University Press, 2025
Keywords
Mendelian randomization, body composition, estimated glomerular filtration rate, magnetic resonance imaging, obesity
National Category
Nephrology
Identifiers
urn:nbn:se:uu:diva-556644 (URN)10.1093/ckj/sfaf116 (DOI)001485073500001 ()40357501 (PubMedID)2-s2.0-105005067204 (Scopus ID)
Funder
Region UppsalaThe Swedish Kidney FoundationEXODIAB - Excellence of Diabetes Research in SwedenErnfors FoundationSwedish Heart Lung Foundation, 20220129
Available from: 2025-05-15 Created: 2025-05-15 Last updated: 2025-05-23Bibliographically approved
Marchesi, S., Lundström, E., Lindström, E., Ödmark, J., Lubberink, M., Ahlström, H. & Lipcsey, M. (2025). Enhanced glomerular thrombosis in pronated animals with ARDS. Intensive Care Medicine Experimental, 13(1), Article ID 36.
Open this publication in new window or tab >>Enhanced glomerular thrombosis in pronated animals with ARDS
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2025 (English)In: Intensive Care Medicine Experimental, E-ISSN 2197-425X, Vol. 13, no 1, article id 36Article in journal (Refereed) Published
Abstract [en]

Background: Prone positioning is part of the management of acute respiratory distress syndrome (ARDS) and has been demonstrated to successfully improve the ventilation-perfusion match and reduce mortality in patients with severe respiratory failure. However, the effect of pronation on other organs than the lungs has not been widely studied. This study aimed to compare abdominal edema, perfusion and inflammation in supine and prone positioning in a porcine ARDS model.

Methods: Seventeen piglets were randomized into two groups: a supine group (n = 9) and a prone group (n = 8). Both groups received endotoxemic infusion and were observed for 6 h. Three animals per group underwent positron emission tomography-magnetic resonance imaging (PET-MRI) for imaging acquisition. Hemodynamic and respiratory parameters were recorded throughout the protocol. Inflammation was assessed by measuring cytokine concentrations in blood, ascites and the abdominal organs' tissue. The edema in abdominal organs was assessed by wet-dry ratio and pathophysiological analysis of tissue samples and by MRI and PET measurements from volumes of interest (VOIs) delineated in abdominal organ in MRI and PET images. The abdominal organs' perfusion was also assessed by MRI and PET measurements.

Results: The prone group had a faster CO2 washout and needed a lower positive end-expiratory pressure to maintain the desired oxygenation. In the prone group duodenal edema was lower (measured with wet-dry ratio) and renal perfusion, by both MRI and PET measurements, was lower than half compared to the supine group (MRI, perfusion fraction, f: supine group 0.13; prone group 0.03; p-value 0.002. PET Flow: supine group 1.7; prone group 0.4 ml/cm3/min; p-value 0.002). In addition, the histopathological samples of the kidneys showed a higher incidence and extent of glomerular thrombosis in the prone group.

Conclusions: In a porcine ARDS model, prone positioning was associated with enhanced glomerular thrombosis and low renal perfusion.

Place, publisher, year, edition, pages
Springer Nature, 2025
Keywords
Prone position, Ventilation, Acute respiratory distress syndrome, Abdominal inflammation, Abdominal perfusion, Abdominal edema, Renal perfusion, Glomerular thrombosis
National Category
Anesthesiology and Intensive Care
Identifiers
urn:nbn:se:uu:diva-553824 (URN)10.1186/s40635-025-00747-7 (DOI)001448579400001 ()40111589 (PubMedID)2-s2.0-105000471965 (Scopus ID)
Available from: 2025-04-07 Created: 2025-04-07 Last updated: 2025-04-07Bibliographically approved
Karlsson, P., Strand, R., Kullberg, J., Michaëlsson, K., Ahlström, H., Lind, L. & Malinovschi, A. (2024). A detailed analysis of body composition in relation to cardiopulmonary exercise test indices.. Scientific Reports, 14(1), 21633, Article ID 21633.
Open this publication in new window or tab >>A detailed analysis of body composition in relation to cardiopulmonary exercise test indices.
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2024 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 14, no 1, p. 21633-, article id 21633Article in journal (Refereed) Published
Abstract [en]

A cardiopulmonary exercise test (CPET) is a test assessing an individual's physiological response during exercise. Results may be affected by body composition, which is best evaluated through imaging techniques like magnetic resonance imaging (MRI). The aim of this study was to assess relationships between body composition and indices obtained from CPET. A total of 234 participants (112 female), all aged 50 years, underwent CPETs and whole-body MRI scans (> 1 million voxels). Voxel-wise statistical analysis of tissue volume and fat content was carried out with a method called Imiomics and related to the CPET indices peak oxygen consumption (V̇O2peak), V̇O2peak scaled by body weight (V̇O2kg) and by total lean mass (V̇O2lean), ventilatory efficiency (V̇E/V̇CO2-slope), work efficiency (ΔV̇O2/ΔWR) and peak exercise respiratory exchange ratio (RERpeak). V̇O2peak showed the highest positive correlation with volume of skeletal muscle. V̇O2kg negatively correlated with tissue volume in subcutaneous fat, particularly gluteal fat. RERpeak negatively correlated with tissue volume in skeletal muscle, subcutaneous fat, visceral fat and liver. Some associations differed between sexes: in females ΔV̇O2/ΔWR correlated positively with tissue volume of subcutaneous fat and V̇E/V̇CO2-slope with tissue volume of visceral fat, and, in males, V̇O2peak correlated positively to lung volume. In conclusion, voxel-based Imiomics provided detailed insights into how CPET indices were related to the tissue volume and fat content of different body structures.

Place, publisher, year, edition, pages
Springer Nature, 2024
Keywords
Body composition, Cardiopulmonary exercise test, MRI
National Category
Clinical Medicine
Identifiers
urn:nbn:se:uu:diva-540866 (URN)10.1038/s41598-024-72973-0 (DOI)001337075200089 ()39285239 (PubMedID)
Available from: 2024-10-22 Created: 2024-10-22 Last updated: 2024-11-06Bibliographically approved
Sousa, J. M., Appel, L., Engstrom, M., Nyholm, D., Ahlström, H. & Lubberink, M. (2024). Comparison of quantitative [11C]PE2I brain PET studies between an integrated PET/MR and a stand-alone PET system. Physica medica (Testo stampato), 117, Article ID 103185.
Open this publication in new window or tab >>Comparison of quantitative [11C]PE2I brain PET studies between an integrated PET/MR and a stand-alone PET system
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2024 (English)In: Physica medica (Testo stampato), ISSN 1120-1797, E-ISSN 1724-191X, Vol. 117, article id 103185Article in journal (Refereed) Published
Abstract [en]

PET/MR systems demanded great efforts for accurate attenuation correction (AC) but differences in technology, geometry and hardware attenuation may also affect quantitative results. Dedicated PET systems using transmission-based AC are regarded as the gold standard for quantitative brain PET. The study aim was to investigate the agreement between quantitative PET outcomes from a PET/MR scanner against a stand-alone PET system.Nine patients with Parkinsonism underwent two 80-min dynamic PET scans with the dopamine transporter ligand [11C]PE2I. Images were reconstructed with resolution-matched settings using 68Ge-transmission (standalone PET), and zero-echo-time MR (PET/MR) scans for AC. Non-displaceable binding potential (BPND) and relative delivery (R1) were evaluated using volumes of interest and voxel-wise analysis.Correlations between systems were high (r >= 0.85) for both quantitative outcome parameters in all brain regions. Striatal BPND was significantly lower on PET/MR than on stand-alone PET (-7%). R1 was significantly overestimated in posterior cortical regions (9%) and underestimated in striatal (-9%) and limbic areas (-6%). The voxel-wise evaluation revealed that the MR-safe headphones caused a negative bias in both parametric BPND and R1 images. Additionally, a significant positive bias of R1 was found in the auditory cortex, most likely due to the acoustic background noise during MR imaging. The relative bias of the quantitative [11C]PE2I PET data acquired from a SIGNA PET/MR system was in the same order as the expected test-retest reproducibility of [11C]PE2I BPND and R1, compared to a stand-alone ECAT PET scanner. MR headphones and background noise are potential sources of error in functional PET/MR studies.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Positron emission tomography, Dopamine transporter, Cerebral blood flow, PET quantification
National Category
Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:uu:diva-520362 (URN)10.1016/j.ejmp.2023.103185 (DOI)001129803800001 ()38042064 (PubMedID)
Funder
Swedish Research Council, 2011-6269Swedish Research Council, 2016-01040Swedish Heart Lung Foundation, 20170492
Available from: 2024-01-15 Created: 2024-01-15 Last updated: 2024-01-15Bibliographically approved
Tarai, S., Lundström, E., Sjöholm, T., Jönsson, H., Korenyushkin, A., Ahmad, N., . . . Kullberg, J. (2024). Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors. Heliyon, 10(4), Article ID e26414.
Open this publication in new window or tab >>Improved automated tumor segmentation in whole-body 3D scans using multi-directional 2D projection-based priors
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2024 (English)In: Heliyon, E-ISSN 2405-8440, Vol. 10, no 4, article id e26414Article in journal (Refereed) Published
Abstract [en]

Early cancer detection, guided by whole-body imaging, is important for the overall survival and well-being of the patients. While various computer-assisted systems have been developed to expedite and enhance cancer diagnostics and longitudinal monitoring, the detection and segmentation of tumors, especially from whole-body scans, remain challenging. To address this, we propose a novel end -to-end automated framework that first generates a tumor probability distribution map (TPDM), incorporating prior information about the tumor characteristics (e.g. size, shape, location). Subsequently, the TPDM is integrated with a state-of-the-art 3D segmentation network along with the original PET/CT or PET/MR images. This aims to produce more meaningful tumor segmentation masks compared to using the baseline 3D segmentation network alone. The proposed method was evaluated on three independent cohorts (autoPET, CAR-T, cHL) of images containing different cancer forms, obtained with different imaging modalities, and acquisition parameters and lesions annotated by different experts. The evaluation demonstrated the superiority of our proposed method over the baseline model by significant margins in terms of Dice coefficient, and lesion-wise sensitivity and precision. Many of the extremely small tumor lesions (i.e. the most difficult to segment) were missed by the baseline model but detected by the proposed model without additional false positives, resulting in clinically more relevant assessments. On average, an improvement of 0.0251 (autoPET), 0.144 (CAR-T), and 0.0528 (cHL) in overall Dice was observed. In conclusion, the proposed TPDM-based approach can be integrated with any state-of-the-art 3D UNET with potentially more accurate and robust segmentation results.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Whole-body tumor segmentation, Medical image analysis, Deep learning, Maximum intensity projection, Backprojection, Segmentation prior
National Category
Radiology, Nuclear Medicine and Medical Imaging Medical Imaging Cancer and Oncology
Identifiers
urn:nbn:se:uu:diva-526888 (URN)10.1016/j.heliyon.2024.e26414 (DOI)001200166200001 ()38390107 (PubMedID)
Funder
Swedish Cancer Society, 201,303 PjF 01Insamlingsstiftelsen Lions Cancerforskningsfond Mellansverige Uppsala-ÖrebroStiftelsen för Makarna Gottfrid och Karin Erikssons fond
Available from: 2024-04-22 Created: 2024-04-22 Last updated: 2025-05-13Bibliographically approved
Ahmad, N., Öfverstedt, J., Tarai, S., Bergström, G., Ahlström, H. & Kullberg, J. (2024). Interpretable Uncertainty-Aware Deep Regression with Cohort Saliency Analysis for Three-Slice CT Imaging Studies. In: Ninon Burgos; Caroline Petitjean; Maria Vakalopoulou; Stergios Christodoulidis; Pierrick Coupe; Hervé Delingette; Carole Lartizien; Diana Mateus (Ed.), Proceedings of The 7nd International Conference on Medical Imaging with Deep Learning: . Paper presented at The 7th International Conference on Medical Imaging with Deep Learning, 3-5 July, 2024, Paris, France (pp. 17-32). MLResearchPress
Open this publication in new window or tab >>Interpretable Uncertainty-Aware Deep Regression with Cohort Saliency Analysis for Three-Slice CT Imaging Studies
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2024 (English)In: Proceedings of The 7nd International Conference on Medical Imaging with Deep Learning / [ed] Ninon Burgos; Caroline Petitjean; Maria Vakalopoulou; Stergios Christodoulidis; Pierrick Coupe; Hervé Delingette; Carole Lartizien; Diana Mateus, MLResearchPress , 2024, p. 17-32Conference paper, Published paper (Refereed)
Abstract [en]

Obesity is associated with an increased risk of morbidity and mortality. Achieving a healthy body composition, which involves maintaining a balance between fat and muscle mass, is important for metabolic health and preventing chronic diseases. Computed tomography (CT) imaging offers detailed insights into the body’s internal structure, aiding in understanding body composition and its related factors. In this feasibility study, we utilized CT image data from 2,724 subjects from the large metabolic health cohort studies SCAPIS and IGT. We train and evaluate an uncertainty-aware deep regression based ResNet-50 network, which outputs its prediction as mean and variance, for quantification of cross-sectional areas of liver, visceral adipose tissue (VAT), and thigh muscle. This was done using collages of three single-slice CT images from the liver, abdomen, and thigh regions. The model demonstrated promising results with the evaluation metrics – including R-squared (R2) and mean absolute error (MAE) for predictions. Additionally, for interpretability, the model was evaluated with saliency analysis based on Grad-CAM (Gradient-weighted Class Activation Mapping) at stages 2, 3, and 4 of the network. Deformable image registration to a template subject further enabled cohort saliency analysis that provide group-wise visualization of image regions of importance for associations to biomarkers of interest. We found that the networks focus on relevant regions for each target, according to prior knowledge.

Place, publisher, year, edition, pages
MLResearchPress, 2024
Series
Proceedings of Machine Learning Research, PMLR, E-ISSN 2640-3498 ; 250
National Category
Radiology and Medical Imaging Epidemiology
Research subject
Machine learning
Identifiers
urn:nbn:se:uu:diva-554960 (URN)
Conference
The 7th International Conference on Medical Imaging with Deep Learning, 3-5 July, 2024, Paris, France
Funder
Swedish Research Council, 2019-04756EXODIAB - Excellence of Diabetes Research in SwedenSwedish Heart Lung Foundation
Available from: 2025-04-18 Created: 2025-04-18 Last updated: 2025-06-10Bibliographically approved
Fryk, E., Silva, V. R., Strindberg, L., Strand, R., Ahlström, H., Michaëlsson, K., . . . Jansson, P.-A. (2024). Metabolic profiling of galectin-1 and galectin-3: a cross-sectional, multi-omics, association study. International Journal of Obesity, 48(8), 1180-1189
Open this publication in new window or tab >>Metabolic profiling of galectin-1 and galectin-3: a cross-sectional, multi-omics, association study
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2024 (English)In: International Journal of Obesity, ISSN 0307-0565, E-ISSN 1476-5497, Vol. 48, no 8, p. 1180-1189Article in journal (Refereed) Published
Abstract [en]

Objectives Experimental studies indicate a role for galectin-1 and galectin-3 in metabolic disease, but clinical evidence from larger populations is limited.

Methods We measured circulating levels of galectin-1 and galectin-3 in the Prospective investigation of Obesity, Energy and Metabolism (POEM) study, participants (n = 502, all aged 50 years) and characterized the individual association profiles with metabolic markers, including clinical measures, metabolomics, adipose tissue distribution (Imiomics) and proteomics.

Results Galectin-1 and galectin-3 were associated with fatty acids, lipoproteins and triglycerides including lipid measurements in the metabolomics analysis adjusted for body mass index (BMI). Galectin-1 was associated with several measurements of adiposity, insulin secretion and insulin sensitivity, while galectin-3 was associated with triglyceride-glucose index (TyG) and fasting insulin levels. Both galectins were associated with inflammatory pathways and fatty acid binding protein (FABP)4 and -5-regulated triglyceride metabolic pathways. Galectin-1 was also associated with several proteins related to adipose tissue differentiation.

Conclusions The association profiles for galectin-1 and galectin-3 indicate overlapping metabolic effects in humans, while the distinctly different associations seen with fat mass, fat distribution, and adipose tissue differentiation markers may suggest a functional role of galectin-1 in obesity.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Endocrinology and Diabetes
Identifiers
urn:nbn:se:uu:diva-540927 (URN)10.1038/s41366-024-01543-1 (DOI)001229232600001 ()38777863 (PubMedID)
Funder
Swedish Research Council, 2022-01011Swedish Research Council, 2016-01040Swedish Research Council, 2019-04756Swedish Heart Lung Foundation, 20220129Novo Nordisk Foundation, NNF17OC0027458
Available from: 2024-10-24 Created: 2024-10-24 Last updated: 2024-10-24Bibliographically approved
Rosqvist, F., Cedernaes, J., Martínez Mora, A., Fridén, M., Johansson, H.-E., Iggman, D., . . . Risérus, U. (2024). Overfeeding polyunsaturated fat compared to saturated fat does not differentially influence lean tissue accumulation in overweight individuals: a randomized controlled trial. American Journal of Clinical Nutrition, 120(1), 121-128
Open this publication in new window or tab >>Overfeeding polyunsaturated fat compared to saturated fat does not differentially influence lean tissue accumulation in overweight individuals: a randomized controlled trial
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2024 (English)In: American Journal of Clinical Nutrition, ISSN 0002-9165, E-ISSN 1938-3207, Vol. 120, no 1, p. 121-128Article in journal (Refereed) Published
Abstract [en]

BACKGROUND: Fatty acids may influence lean tissue volume and skeletal muscle function. We previously reported in young lean participants that overfeeding polyunsaturated fat (PUFA) compared with saturated fat (SFA) induced greater lean tissue accumulation despite similar weight gain.

OBJECTIVE: In a double-blind randomized controlled trial (RCT), we aimed to investigate if the differential effects of overfeeding SFA and PUFA on lean tissue accumulation could be replicated in individuals with overweight, and identify potential determinants. Further, using substitution models, we investigated associations between SFA and PUFA levels with lean tissue volume, in a large population-based sample (UK Biobank).

METHODS: Sixty-one males and females with overweight (BMI 27.3 (interquartile range 25.4 to 29.3), age 43 (interquartile range 36 to 48)) were overfed SFA (palm oil) or n-6 PUFA (sunflower oil) for 8 weeks. Lean tissue was assessed by magnetic resonance imaging (MRI). We had access to n=13849 participants with data on diet, covariates and MRI measurements of lean tissue, as well as 9119 participants with data on circulating fatty acids, in the UK Biobank.

RESULTS: Body weight gain (mean±SD) was similar in PUFA (2.01±1.90 kg) and SFA (2.31±1.38 kg) groups. Lean tissue increased to a similar extent (0.54±0.93 L and 0.67±1.21 L for PUFA and SFA group, respectively, with a difference between groups of 0.07 (-0,21, 0,35)). We observed no differential effects on circulating amino acids, myostatin or interleukin-15 and no clear determinants of lean tissue accumulation. Similar non-significant results for SFA and PUFA were observed in UK Biobank, but circulating fatty acids demonstrated ambiguous and sex-dependent associations.

CONCLUSION: Overfeeding SFA or PUFA does not differentially affect lean tissue accumulation during 8 weeks in individuals with overweight. A lack of dietary fat type-specific effects on lean tissue is supported by specified substitution models in a large population-based cohort consuming their habitual diet.

TRIAL REGISTRATION: ClinicalTrials.gov Identifier: NCT02211612.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Saturated fat, body composition, lean tissue, overfeeding, polyunsaturated fat
National Category
Endocrinology and Diabetes
Identifiers
urn:nbn:se:uu:diva-526864 (URN)10.1016/j.ajcnut.2024.04.010 (DOI)001263653100001 ()38636844 (PubMedID)
Funder
Swedish Research Council, K2015-54X-22081-04-3Swedish Research Council, 2016-01040Swedish Research Council, 2019-04756Swedish Heart Lung Foundation, 2021-70492Swedish Diabetes AssociationErnfors FoundationSwedish Nutrition Foundation (SNF)EXODIAB - Excellence of Diabetes Research in Sweden
Available from: 2024-04-19 Created: 2024-04-19 Last updated: 2024-08-19Bibliographically approved
Tarai, S., Lundström, E., Öfverstedt, J., Jönsson, H., Ahmad, N., Ahlström, H. & Kullberg, J. (2024). Prediction of Total Metabolic Tumor Volume from Tissue-Wise FDG-PET/CT Projections, Interpreted Using Cohort Saliency Analysis. In: Moi Hoon Yap; Connah Kendrick; Ardhendu Behera; Timothy Cootes; Reyer Zwiggelaar (Ed.), Medical Image Understanding and Analysis: 28th Annual Conference, MIUA 2024, Manchester, UK, July 24–26, 2024, Proceedings, Part II. Paper presented at 28th Annual Conference, MIUA 2024, Manchester, UK, July 24–26, 2024 (pp. 242-255). Cham: Springer
Open this publication in new window or tab >>Prediction of Total Metabolic Tumor Volume from Tissue-Wise FDG-PET/CT Projections, Interpreted Using Cohort Saliency Analysis
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2024 (English)In: Medical Image Understanding and Analysis: 28th Annual Conference, MIUA 2024, Manchester, UK, July 24–26, 2024, Proceedings, Part II / [ed] Moi Hoon Yap; Connah Kendrick; Ardhendu Behera; Timothy Cootes; Reyer Zwiggelaar, Cham: Springer, 2024, p. 242-255Conference paper, Published paper (Refereed)
Abstract [en]

Early and accurate prediction of clinical outcomes holds great potential for patient prognostics and personalized treatment planning. Development of automated methods for estimation of medical image-based clinical parameters (e.g. total metabolic tumor volume, TMTV) could pave the way for predicting advanced clinical outcomes not explicitly available in the images, such as overall survival. We developed an automated framework that extracted tissue-wise multi-channel 2D projections from whole-body FDG-PET/CT volumes, by separating tissues based on CT Hounsfield units, and used a DenseNet-121 to estimate the TMTV from the projections. For transparency and interpretability, an image registration-based cohort saliency analysis was proposed. The network was applied on the autoPET cohort (501 scans representing lymphoma, lung cancer, melanoma) and evaluated using a single channel method (baseline) and a multi-channel method (proposed), for the purpose of comparison. The incorporation of multiple channels demonstrated an advantage in the TMTV prediction, outperforming the baseline model with a ΔMAE = –14.34 ml; ΔR2 = 0.1584; ΔICC = 0.1316 (p-value = 0.0098). The Pearson correlation coefficient (r) was computed between the ground truth (GT) tumor projections and the aggregated saliency maps. Statistical comparison, via bootstrapping, showed that the proposed model consistently outperformed the baseline, with significantly higher r across all cancer types and both sexes, except for melanoma in females. This implied that the aggregated saliency maps generated by the proposed model showed higher correspondence with the GT, compared to the baseline model. Our approach offers a promising and interpretable framework for the automated prediction of TMTV, with further potential to also predict advanced clinical outcomes.

Place, publisher, year, edition, pages
Cham: Springer, 2024
Series
Lecture Notes in Computer Science (LNCS), ISSN 0302-9743, E-ISSN 1611-3349 ; 14860
Keywords
Whole-body PET/CT projections, Deep regression, Cohort saliency analysis
National Category
Cancer and Oncology Radiology, Nuclear Medicine and Medical Imaging
Identifiers
urn:nbn:se:uu:diva-541110 (URN)10.1007/978-3-031-66958-3_18 (DOI)001314340700018 ()978-3-031-66957-6 (ISBN)978-3-031-66958-3 (ISBN)
Conference
28th Annual Conference, MIUA 2024, Manchester, UK, July 24–26, 2024
Funder
Swedish Cancer Society, 201303 PjF 01Stiftelsen för Makarna Gottfrid och Karin Erikssons fond
Available from: 2024-10-28 Created: 2024-10-28 Last updated: 2025-05-13Bibliographically approved
Projects
Leverfett som ny måltavla för kostbehandling av kardiometabola rubbningar vid prediabetes och diabetes [20180709_HLF]; Uppsala UniversityImiomics and Deep Learning MRI and PET-MRI Studies on Causes and Consequences of Body Composition in Cardiovascular Disease [20200500_HLF]; Uppsala UniversityMolecular imaging of pathophysiologic processes in aortic disease [20200584_HLF]; Uppsala UniversityLarge-scale medical image analysis for detailed studies of causes and consequences of body composition in relation to cardiovascular disease [2023-03607_VR]; Uppsala University
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-8701-969x

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