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Fekry, Mostafa
Publications (2 of 2) Show all publications
Fekry, M., Stenberg, G., Dobritzsch, D. & Danielson, U. H. (2024). Production of stable and pure ZC3H11A-An extensively disordered RNA binding protein. Protein Expression and Purification, 222, Article ID 106542.
Open this publication in new window or tab >>Production of stable and pure ZC3H11A-An extensively disordered RNA binding protein
2024 (English)In: Protein Expression and Purification, ISSN 1046-5928, E-ISSN 1096-0279, Vol. 222, article id 106542Article in journal (Refereed) Published
Abstract [en]

Human ZC3H11A is an RNA-binding zinc finger protein involved in mRNA export and required for the efficient growth of human nuclear replicating viruses. Its biochemical properties are largely unknown so our goal has been to produce the protein in a pure and stable form suitable for its characterization. This has been challenging since the protein is large (810 amino acids) and with only the N-terminal zinc finger domain (amino acids 1-86) being well structured, the remainder is intrinsically disordered. Our production strategies have encompassed recombinant expression of full-length, truncated and mutated ZC3H11A variants with varying purification tags and fusion proteins in several expression systems, with or without co-expression of chaperones and putative interaction partners. A range of purification schemes have been explored. Initially, only truncated ZC3H11A encompassing the zinc finger domain could successfully be produced in a stable form. It required recombinant expression in insect cells since expression in E. coli gave a protein that aggregated. To reduce problematic nucleic acid contaminations, Cys8, located in one of the zinc fingers, was substituted by Ala and Ser. Interestingly, this did not affect nucleic acid binding, but the full-length protein was stabilised while the truncated version was insoluble. Ultimately, we discovered that when using alkaline buffers (pH 9) for purification, full-length ZC3H11A expressed in Sf9 insect cells was obtained in a stable and >90 % pure form, and as a mixture of monomers, dimers, tetramers and hexamers. Many of the challenges experienced are consistent with its predicted structure and unusual charge distribution.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Zinc finger, RNA binding proteins, Insect cell expression, mRNA export, ZC3H11A
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-535387 (URN)10.1016/j.pep.2024.106542 (DOI)001266753100001 ()38969281 (PubMedID)
Funder
Knut and Alice Wallenberg Foundation, 2017.0071
Available from: 2024-07-31 Created: 2024-07-31 Last updated: 2025-02-20Bibliographically approved
Fekry, M., Dave, K. K., Badgujar, D., Hamnevik, E., Aurelius, O., Dobritzsch, D. & Danielson, U. H. (2023). The Crystal Structure of Tyrosinase from Verrucomicrobium spinosum Reveals It to Be an Atypical Bacterial Tyrosinase. Biomolecules, 13(9), Article ID 1360.
Open this publication in new window or tab >>The Crystal Structure of Tyrosinase from Verrucomicrobium spinosum Reveals It to Be an Atypical Bacterial Tyrosinase
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2023 (English)In: Biomolecules, E-ISSN 2218-273X, Vol. 13, no 9, article id 1360Article in journal (Refereed) Published
Abstract [en]

Tyrosinases belong to the type-III copper enzyme family, which is involved in melanin production in a wide range of organisms. Despite similar overall characteristics and functions, their structures, activities, substrate specificities and regulation vary. The tyrosinase from the bacterium Verrucomicrobium spinosum (vsTyr) is produced as a pre-pro-enzyme in which a C-terminal extension serves as an inactivation domain. It does not require a caddie protein for copper ion incorporation, which makes it similar to eukaryotic tyrosinases. To gain an understanding of the catalytic machinery and regulation of vsTyr activity, we determined the structure of the catalytically active "core domain" of vsTyr by X-ray crystallography. The analysis showed that vsTyr is an atypical bacterial tyrosinase not only because it is independent of a caddie protein but also because it shows the highest structural (and sequence) similarity to plant-derived members of the type-III copper enzyme family and is more closely related to fungal tyrosinases regarding active site features. By modelling the structure of the pre-pro-enzyme using AlphaFold, we observed that Phe453, located in the C-terminal extension, is appropriately positioned to function as a "gatekeeper" residue. Our findings raise questions concerning the evolutionary origin of vsTyr.

Place, publisher, year, edition, pages
MDPI, 2023
Keywords
tyrosinase, Verrucomicrobium spinosum, crystal structure
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-514059 (URN)10.3390/biom13091360 (DOI)001073490800001 ()37759761 (PubMedID)
Available from: 2023-10-17 Created: 2023-10-17 Last updated: 2025-02-20Bibliographically approved
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