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Cunningham, Janet, ProfessorORCID iD iconorcid.org/0000-0001-7876-7779
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Publications (10 of 73) Show all publications
Li, X., Edén, A., Malwade, S., Cunningham, J. L., Bergquist, J., Ahlberg Weidenfors, J., . . . Erhardt, S. (2025). Central and peripheral kynurenine pathway metabolites in COVID-19: Implications for neurological and immunological responses. Brain, behavior, and immunity, 124, 163-176
Open this publication in new window or tab >>Central and peripheral kynurenine pathway metabolites in COVID-19: Implications for neurological and immunological responses
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2025 (English)In: Brain, behavior, and immunity, ISSN 0889-1591, E-ISSN 1090-2139, Vol. 124, p. 163-176Article in journal (Refereed) Published
Abstract [en]

Long-term symptoms such as pain, fatigue, and cognitive impairments are commonly observed in individuals affected by coronavirus disease 2019 (COVID-19). Metabolites of the kynurenine pathway have been proposed to account for cognitive impairment in COVID-19 patients.

Here, cerebrospinal fluid (CSF) and plasma levels of kynurenine pathway metabolites in 53 COVID-19 patients and 12 non-inflammatory neurological disease controls in Sweden were measured with an ultra-performance liquid chromatography-tandem mass spectrometry system (UPLC-MS/MS) and correlated with immunological markers and neurological markers. Single cell transcriptomic data from a previous study of 130 COVID-19 patients was used to investigate the expression of key genes in the kynurenine pathway.

The present study reveals that the neuroactive kynurenine pathway metabolites quinolinic acid (QUIN) and kynurenic acid (KYNA) are increased in CSF in patients with acute COVID-19. In addition, CSF levels of kynurenine, ratio of kynurenine/tryptophan (rKT) and QUIN correlate with neurodegenerative markers. Furthermore, tryptophan is significantly decreased in plasma but not in the CSF. In addition, the kynurenine pathway is strongly activated in the plasma and correlates with the peripheral immunological marker neopterin. Single-cell transcriptomics revealed upregulated gene expressions of the rate-limiting enzyme indoleamine 2,3- dioxygenase1 (IDO1) in CD14+ and CD16+ monocytes that correlated with type II-interferon response exclusively in COVID-19 patients.

In summary, our study confirms significant activation of the peripheral kynurenine pathway in patients with acute COVID-19 and, notably, this is the first study to identify elevated levels of kynurenine metabolites in the central nervous system associated with the disease. Our findings suggest that peripheral inflammation, potentially linked to overexpression of IDO1 in monocytes, activates the kynurenine pathway. Increased plasma kynurenine, crossing the blood–brain barrier, serves as a source for elevated brain KYNA and neurotoxic QUIN. We conclude that blocking peripheral-to-central kynurenine transport could be a promising strategy to protect against neurotoxic effects of QUIN in COVID-19 patients.

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
Infectious disease, Cognition, Neuroinflammation
National Category
Neurosciences
Identifiers
urn:nbn:se:uu:diva-545745 (URN)10.1016/j.bbi.2024.11.031 (DOI)001375993400001 ()39615604 (PubMedID)2-s2.0-85211048036 (Scopus ID)
Funder
Karolinska InstituteKnut and Alice Wallenberg Foundation, 2020.0182Knut and Alice Wallenberg Foundation, 2020.0241Science for Life Laboratory, SciLifeLabKTH Royal Institute of TechnologySwedish Research Council, 2021-02251Swedish Research Council, 2019-01452Swedish Research Council, 2017-03054Swedish Research Council, 2019-06082Swedish Research Council, 2021-05045Swedish Research Council, 2021-06545The Swedish Brain Foundation, FO2022-0140Åhlén-stiftelsenFamiljen Erling-Perssons StiftelseMärta och Nicke Nasvells stiftelseRegion UppsalaSwedish Society for Medical Research (SSMF), SG-22-0192-H-01Konung Gustaf V:s och Drottning Victorias Frimurarestiftelse
Available from: 2024-12-20 Created: 2024-12-20 Last updated: 2024-12-20Bibliographically approved
Gallwitz, M., Lindqvist, I., Rasmusson, A. J., Cervenka, S., Burman, J. & Cunningham, J. (2025). Response to: "Circular reasoning concerning red flags for predicting rituximab response in OCD" [Letter to the editor]. Molecular Psychiatry, 30(7), 3323-3324
Open this publication in new window or tab >>Response to: "Circular reasoning concerning red flags for predicting rituximab response in OCD"
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2025 (English)In: Molecular Psychiatry, ISSN 1359-4184, E-ISSN 1476-5578, Vol. 30, no 7, p. 3323-3324Article in journal, Letter (Other academic) Published
Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Neurology
Identifiers
urn:nbn:se:uu:diva-569528 (URN)10.1038/s41380-025-03012-1 (DOI)001477746300001 ()40295760 (PubMedID)2-s2.0-105003771537 (Scopus ID)
Available from: 2025-10-24 Created: 2025-10-24 Last updated: 2025-10-24Bibliographically approved
Gallwitz, M., Lindqvist, I., Mulder, J., Rasmusson, A. J., Larsson, A., Husén, E., . . . Cunningham, J. L. (2025). Three cases with chronic obsessive compulsive disorder report gains in wellbeing and function following rituximab treatment. Molecular Psychiatry, 30(4), 1396-1406
Open this publication in new window or tab >>Three cases with chronic obsessive compulsive disorder report gains in wellbeing and function following rituximab treatment
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2025 (English)In: Molecular Psychiatry, ISSN 1359-4184, E-ISSN 1476-5578, Vol. 30, no 4, p. 1396-1406Article in journal (Refereed) Published
Abstract [en]

Immunological aetiology is supported for a subgroup with obsessive compulsive disorder (OCD) and conceptualized as autoimmune OCD. The longitudinal clinical course is detailed for three severely ill cases with OCD and indications of immunological involvement with off-label rituximab treatment every six months. All cases showed clear and sustained gains regarding symptom burden and function for over 2.5 years. Brief Psychiatric Rating Scale and Yale-Brown Obsessive-Compulsive Inventory Scale scores decreased 67-100% and 44-92%, respectively. These complex cases, prior to rituximab, had very low functioning and disease duration has been eight, nine and 16 years respectively. All three patients had been unsuccessfully treated with at least two antidepressants or anxiolytics, one neuroleptic and cognitive behavioural therapy. Clinical phenotypes and findings were suggestive of possible autoimmune OCD. Indirect immunohistochemistry detected cerebral spinal fluid (CSF) antibodies in all three cases including a novel anti-neuronal staining pattern against mouse thalamic cells. Exploratory analyses of CSF markers and proteomics identified elevated levels of sCD27 and markers indicative of complement pathway activation when compared to CSF from healthy controls. Multidisciplinary collaboration, advanced clinical investigations and rituximab treatment are feasible in a psychiatric setting. The case histories provide a proof of principle for the newly proposed criteria for autoimmune OCD. The findings suggest that clinical red flags and biological measures may predict rituximab response in chronic treatment-resistant OCD. The report provides orientation that may inform the hypotheses and design of future treatment trials.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Psychiatry
Identifiers
urn:nbn:se:uu:diva-538897 (URN)10.1038/s41380-024-02750-y (DOI)001316307600001 ()39304742 (PubMedID)2-s2.0-85204491228 (Scopus ID)
Note

These authors contributed equally: Maike Gallwitz, Isa Lindqvist.

Available from: 2024-09-21 Created: 2024-09-21 Last updated: 2025-06-18Bibliographically approved
Cunningham, J., Frankovich, J., Dubin, R. A., Pedrosa, E., Baykara, R. N., Schlenk, N. C., . . . Lachman, H. M. (2025). Ultrarare Variants in DNA Damage Repair Genes in Pediatric Acute-Onset Neuropsychiatric Syndrome or Acute Behavioral Regression in Neurodevelopmental Disorders. Developmental Neuroscience, 47(4), 231-250
Open this publication in new window or tab >>Ultrarare Variants in DNA Damage Repair Genes in Pediatric Acute-Onset Neuropsychiatric Syndrome or Acute Behavioral Regression in Neurodevelopmental Disorders
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2025 (English)In: Developmental Neuroscience, ISSN 0378-5866, E-ISSN 1421-9859, Vol. 47, no 4, p. 231-250Article in journal (Refereed) Published
Abstract [en]

Introduction: Acute onset of severe psychiatric symptoms or regression may occur in children with premorbid neurodevelopmental disorders, although typically developing children can also be affected. Infections or other stressors are likely triggers. The underlying causes are unclear, but a current hypothesis suggests the convergence of genes that influence neuronal and immunological function. We previously identified 11 genes in pediatric acute-onset neuropsychiatric syndrome (PANS), in which two classes of genes related to either synaptic function or the immune system were found. Among the latter, three affect the DNA damage response (DDR): PPM1D, CHK2, and RAG1. We now report an additional 17 cases with mutations in PPM1D and other DDR genes in patients with acute onset of psychiatric symptoms and/or regression that their clinicians classified as PANS or another inflammatory brain condition.

Methods: We analyzed genetic findings obtained from parents and carried out whole-exome sequencing on a total of 17 cases, which included 3 sibling pairs and a family with 4 affected children.

Results: The DDR genes include clusters affecting p53 DNA repair (PPM1D, ATM, ATR, 53BP1, and RMRP), and the Fanconi Anemia Complex (FANCE, SLX4/FANCP, FANCA, FANCI, and FANCC). We hypothesize that defects in DNA repair genes, in the context of infection or other stressors, could contribute to decompensated states through an increase in genomic instability with a concomitant accumulation of cytosolic DNA in immune cells triggering DNA sensors, such as cGAS-STING and AIM2 inflammasomes, as well as central deficits on neuroplasticity. In addition, increased senescence and defective apoptosis affecting immunological responses could be playing a role.

Conclusion: These compelling preliminary findings motivate further genetic and functional characterization as the downstream impact of DDR deficits may point to novel treatment strategies.

Place, publisher, year, edition, pages
S. Karger, 2025
Keywords
Pediatric acute-onset neuropsychiatric syndrome, Autism, Regression, DNA repair, Fanconi anemia complex, Neuroinflammatory, Jansen de Vries syndrome, cGAS-STING, Type I interferons, DNA damage response
National Category
Neurosciences Pediatrics Psychiatry Medical Genetics and Genomics
Identifiers
urn:nbn:se:uu:diva-569616 (URN)10.1159/000541908 (DOI)001354598500001 ()39396515 (PubMedID)2-s2.0-85209644694 (Scopus ID)
Funder
Swedish Research Council, 2019-06082EU, Horizon 2020
Available from: 2025-10-24 Created: 2025-10-24 Last updated: 2025-10-30Bibliographically approved
Thörnblom, E., Cunningham, J. L., Gingnell, M., Landén, M., Bergquist, J. & Bodén, R. (2024). Allopregnanolone and progesterone in relation to a single electroconvulsive therapy seizure and subsequent clinical outcome: an observational cohort study. BMC Psychiatry, 24(1), Article ID 687.
Open this publication in new window or tab >>Allopregnanolone and progesterone in relation to a single electroconvulsive therapy seizure and subsequent clinical outcome: an observational cohort study
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2024 (English)In: BMC Psychiatry, E-ISSN 1471-244X, Vol. 24, no 1, article id 687Article in journal (Refereed) Published
Abstract [en]

Background

Electroconvulsive therapy (ECT) is an important treatment for several severe psychiatric conditions, yet its precise mechanism of action remains unknown. Increased inhibition in the brain after ECT seizures, mediated by γ-aminobutyric acid (GABA), has been linked to clinical effectiveness. Case series on epileptic patients report a postictal serum concentration increase of the GABAA receptor agonist allopregnanolone. Serum allopregnanolone remains unchanged after a full ECT series, but possible transient effects directly after a single ECT seizure remain unexplored. The primary aim was to measure serum concentrations of allopregnanolone and its substrate progesterone after one ECT seizure. Secondary aims were to examine whether concentrations at baseline, or postictal changes, either correlate with seizure generalization or predict clinical outcome ratings after ECT.

Methods

A total of 130 participants (18–85 years) were included. Generalization parameters comprised peak ictal heart rate, electroencephalographic (EEG) seizure duration, and prolactin increase. Outcome measures were ratings of clinical global improvement, perceived health status and subjective memory impairment. Non-parametric tests were used for group comparisons and correlations. The prediction analyses were conducted with binary logistic and simple linear regression analyses.

Results

Allopregnanolone and progesterone remained unchanged and correlated neither with seizure generalization nor with clinical outcome. In men (n = 50), progesterone increased and allopregnanolone change correlated negatively with EEG seizure duration. In a subgroup analysis (n = 62), higher baseline allopregnanolone and progesterone correlated with postictal EEG suppression.

Conclusions

ECT seizures have different physiologic effects than generalized seizures in epilepsy. Progesterone might have implications for psychiatric illness in men.

Place, publisher, year, edition, pages
BioMed Central (BMC), 2024
Keywords
Electroconvulsive therapy, epileptic seizures, Allopregnanolone, Progesterone
National Category
Psychiatry Neurology
Identifiers
urn:nbn:se:uu:diva-539836 (URN)10.1186/s12888-024-06167-3 (DOI)001333483000003 ()39407178 (PubMedID)
Funder
Swedish Research Council, 2018-02653Swedish Foundation for Strategic Research, KF10-0039Stiftelsen Professor Bror Gadelius MinnesfondFredrik och Ingrid Thurings Stiftelse, 2015-00148Swedish Research Council, 2016-02362Region UppsalaUppsala University
Available from: 2024-10-05 Created: 2024-10-05 Last updated: 2024-11-06Bibliographically approved
Syk, M., Tornvind, E., Gallwitz, M., Fällmar, D., Amandusson, Å., Rothkegel, H., . . . Cunningham, J. (2024). An exploratory study of the damage markers NfL, GFAP, and t-Tau, in cerebrospinal fluid and other findings from a patient cohort enriched for suspected autoimmune psychiatric disease. Translational Psychiatry, 14(1), Article ID 304.
Open this publication in new window or tab >>An exploratory study of the damage markers NfL, GFAP, and t-Tau, in cerebrospinal fluid and other findings from a patient cohort enriched for suspected autoimmune psychiatric disease
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2024 (English)In: Translational Psychiatry, E-ISSN 2158-3188, Vol. 14, no 1, article id 304Article in journal (Refereed) Published
Abstract [en]

There is growing evidence suggesting that immunological mechanisms play a significant role in the development of psychiatric symptoms in certain patient subgroups. However, the relationship between clinical red flags for suspected autoimmune psychiatric disease and signs of central nervous system (CNS) pathology (e.g., routine cerebrospinal fluid (CSF) alterations, CNS damage markers, neurophysiological or neuroimaging findings) has received limited attention. Here, we aimed to describe the prevalence and distribution of potential CNS pathologies in psychiatric patients in relation to clinical red flags for autoimmune psychiatric disease and psychiatric symptoms. CSF routine findings and CNS damage markers; neurofilament light chain protein (NfL), glial fibrillary acidic protein (GFAP) and total Tau (t-Tau), in CSF from 127 patients with psychiatric disease preselected for suspected immunological involvement were related to recently proposed clinical red flags, psychiatric features, and MRI and EEG findings. Twenty-one percent had abnormal routine CSF findings and 27% had elevated levels of CNS damage markers. Six percent had anti-neuronal antibodies in serum and 2% had these antibodies in the CSF. Sixty-six percent of patients examined with MRI (n = 88) had alterations, mostly atrophy or nonspecific white matter lesions. Twenty-seven percent of patients with EEG recordings (n = 70) had abnormal findings. Elevated NfL levels were associated with comorbid autoimmunity and affective dysregulation symptoms. Elevated t-Tau was associated with catatonia and higher ratings of agitation/hyperactivity. Elevated GFAP was associated with acute onset, atypical presentation, infectious prodrome, tics, depressive/anxiety symptom ratings and overall greater psychiatric symptom burden. In conclusion, preselection based on suspected autoimmune psychiatric disease identifies a population with a high prevalence of CSF alterations suggesting CNS pathology. Future studies should examine the value of these markers in predicting treatment responses.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Psychiatry Neurosciences
Identifiers
urn:nbn:se:uu:diva-536476 (URN)10.1038/s41398-024-03021-8 (DOI)001275577000002 ()39048548 (PubMedID)
Funder
Swedish Research Council, 2019-06082Swedish Research Council, 523-2014-3467Swedish Research Council, 2016-02362Swedish Research Council, 2022-00637Märta och Nicke Nasvells stiftelseStiftelsen Söderström - Königska sjukhemmetSwedish Society of MedicineFredrik och Ingrid Thurings StiftelseInsamlingsfonden Bissen BrainwalkUppsala University
Available from: 2024-08-23 Created: 2024-08-23 Last updated: 2024-11-21Bibliographically approved
Tigchelaar, C., Cunningham, J. L., Rasmusson, A. J., Thulin, M., Burman, J., Kema, I. P., . . . Absalom, A. R. (2024). Cerebrospinal fluid and plasma concentrations of the inflammatory marker soluble CD27 in a large surgical population. iScience, 27(6), Article ID 110036.
Open this publication in new window or tab >>Cerebrospinal fluid and plasma concentrations of the inflammatory marker soluble CD27 in a large surgical population
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2024 (English)In: iScience, E-ISSN 2589-0042, Vol. 27, no 6, article id 110036Article in journal (Refereed) Published
Abstract [en]

Introduction: Soluble CD27 (sCD27) has the potential to serve as a biomarker for diseases involving immune system dysfunction. To inform interpretation of assay results, reference values are needed. So far, analysis of cerebrospinal fluid (CSF) sCD27 has mostly been performed in cohorts of patients with neuroinflammatory disorders, and general control data is missing. The aim of this study was therefore to determine reference ranges and to investigate the influence of factors such as age, comorbidity, blood-CSF-barrier (BCB) function (as assessed by the CSF/plasma albumin quotient (Qalb)) and inflammatory status markers, on CSF and plasma sCD27 concentrations in a relatively neurologically healthy surgical population. 

Methods: CSF and blood were collected from 486 patients undergoing spinal anaesthesia for elective surgery. Patient demographics, clinical data and the results of routine laboratory analyses were analysed for associations with sCD27 levels in CSF and plasma using a univariable and multivariable model. A healthy sub-cohort was selected based on an American Society of Anesthesiologists (ASA) physical status of I or II (healthy patient or with mild systemic disease), and inter alia, no history of cancer, immunological or neurological disorders, heavy tobacco use, or alcohol abuse. For the whole cohort, and the subpopulation of healthy patients we calculated reference intervals as the central 95% of the data.

Results: In the total study group (age range 18 – 92 years, 57% male), median [range] CSF sCD27 concentration  was 163 [<50 to 7474] pg/mL and median [range] plasma sCD27 concentration was 4624 [1830 to >400,000] pg/mL. In a multivariable model, plasma sCD27 concentration, age and Qalb were identified as most important for explaining the variability of CSF sCD27 levels. Reference sCD27 concentration intervals in the healthy sub-cohort were < 50 pg/mL – 419 pg/mL for CSF (n=125) and 2344 – 36422 pg/mL for plasma (n=158). 

Conclusions: Our data from a large group of patients reflecting a broad selection from the general population show that CSF sCD27 concentrations correlate with age and Qalb. These findings provide a solid foundation for interpreting sCD27 as clinical biomarker against a background of multiple socio-demographic and physiological aspects that may influence levels. Further studies to establish clinical CSF sCD27 cut-offs for central nervous system diseases should also account for the influence of age and blood-CSF-barrier function.

Place, publisher, year, edition, pages
Elsevier, 2024
National Category
Neurology
Identifiers
urn:nbn:se:uu:diva-532145 (URN)10.1016/j.isci.2024.110036 (DOI)001256318900001 ()38883839 (PubMedID)
Funder
Uppsala University
Available from: 2024-06-18 Created: 2024-06-18 Last updated: 2024-07-08Bibliographically approved
Spangenberg, H., Ramklint, M., Cunningham, J. & Ramirez, A. (2024). Correlations between personality traits, personality disorders, and immunometabolic markers. Scientific Reports, 14, Article ID 11635.
Open this publication in new window or tab >>Correlations between personality traits, personality disorders, and immunometabolic markers
2024 (English)In: Scientific Reports, E-ISSN 2045-2322, Vol. 14, article id 11635Article in journal (Refereed) Published
Abstract [en]

Evidence links immune system alterations to major psychiatric disorders. The few previous studies on personality traits or personality disorders (PDs) indicate that immunometabolic dysregulation may be prevalent in this population. This study aimed to investigate relationships between personality traits, PDs, and immunometabolic markers in peripheral blood. We hypothesized that neuroticism would be correlated with elevated leptin. Participants were recruited as young adults seeking care for general psychiatric disorders. They responded to a personality inventory and were assessed for PDs, and reevaluated again at a 12 years follow-up. Blood samples were collected at the follow-up and analyzed for 29 immunometabolic markers. A positive correlation was found between the personality trait neuroticism and leptin (ρ = 0.31, p = 0.02). An exploratory analysis also revealed a positive correlation between brain-derived neurotrophic factor (ρ = 0.36, p < 0.01) and neuroticism. These findings remained after adjusting for other variables in general linear models. There were no relationships between PDs and any immunometabolic markers. Results both confirm previous findings of correlations between the immunometabolic system and personality traits and suggest directions for future research.

Place, publisher, year, edition, pages
Nature Publishing Group, 2024
National Category
Psychiatry
Identifiers
urn:nbn:se:uu:diva-498143 (URN)10.1038/s41598-024-62214-9 (DOI)001229023500112 ()38773198 (PubMedID)
Available from: 2023-03-10 Created: 2023-03-10 Last updated: 2024-07-02Bibliographically approved
Jernbom, A. F., Skoglund, L., Pin, E., Sjoberg, R., Tegel, H., Hober, S., . . . Nilsson, P. (2024). Prevalent and persistent new-onset autoantibodies in mild to severe COVID-19. Nature Communications, 15(1), Article ID 8941.
Open this publication in new window or tab >>Prevalent and persistent new-onset autoantibodies in mild to severe COVID-19
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2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, no 1, article id 8941Article in journal (Refereed) Published
Abstract [en]

Autoantibodies have been shown to be implied in COVID-19 but the emerging autoantibody repertoire remains largely unexplored. We investigated the new-onset autoantibody repertoire in 525 healthcare workers and hospitalized COVID-19 patients at five time points over a 16-month period in 2020 and 2021 using proteome-wide and targeted protein and peptide arrays. Our results show that prevalent new-onset autoantibodies against a wide range of antigens emerged following SARS-CoV-2 infection in relation to pre-infectious baseline samples and remained elevated for at least 12 months. We found an increased prevalence of new-onset autoantibodies after severe COVID-19 and demonstrated associations between distinct new-onset autoantibodies and neuropsychiatric symptoms post-COVID-19. Using epitope mapping, we determined the main epitopes of selected new-onset autoantibodies, validated them in independent cohorts of neuro-COVID and pre-pandemic healthy controls, and identified sequence similarities suggestive of molecular mimicry between main epitopes and the conserved fusion peptide of the SARS-CoV-2 Spike glycoprotein. Our work describes the complexity and dynamics of the autoantibody repertoire emerging with COVID-19 and supports the need for continued analysis of the new-onset autoantibody repertoire to elucidate the mechanisms of the post-COVID-19 condition. Autoantibody immune responses could contribute to acute and post-COVID-19 symptoms. Here, the authors describe longitudinal autoantibody responses in a cohort of healthcare workers and hospitalised COVID-19 patients from Sweden.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Immunology in the medical area Infectious Medicine
Identifiers
urn:nbn:se:uu:diva-542263 (URN)10.1038/s41467-024-53356-5 (DOI)001336260600001 ()39414823 (PubMedID)
Available from: 2024-11-15 Created: 2024-11-15 Last updated: 2024-11-15Bibliographically approved
Brunet-Ratnasingham, E., Morin, S., Randolph, H. E., Labrecque, M., Bélair, J., Lima-Barbosa, R., . . . Kaufmann, D. E. (2024). Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity. Nature Communications, 15(1), Article ID 4177.
Open this publication in new window or tab >>Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity
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2024 (English)In: Nature Communications, E-ISSN 2041-1723, Vol. 15, no 1, article id 4177Article in journal (Refereed) Published
Abstract [en]

Plasma RNAemia, delayed antibody responses and inflammation predict COVID-19 outcomes, but the mechanisms underlying these immunovirological patterns are poorly understood. We profile 782 longitudinal plasma samples from 318 hospitalized patients with COVID-19. Integrated analysis using k-means reveals four patient clusters in a discovery cohort: mechanically ventilated critically-ill cases are subdivided into good prognosis and high-fatality clusters (reproduced in a validation cohort), while non-critical survivors segregate into high and low early antibody responders. Only the high-fatality cluster is enriched for transcriptomic signatures associated with COVID-19 severity, and each cluster has distinct RBD-specific antibody elicitation kinetics. Both critical and non-critical clusters with delayed antibody responses exhibit sustained IFN signatures, which negatively correlate with contemporaneous RBD-specific IgG levels and absolute SARS-CoV-2-specific B and CD4+ T cell frequencies. These data suggest that the "Interferon paradox" previously described in murine LCMV models is operative in COVID-19, with excessive IFN signaling delaying development of adaptive virus-specific immunity.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Anesthesiology and Intensive Care
Identifiers
urn:nbn:se:uu:diva-528338 (URN)10.1038/s41467-024-48556-y (DOI)001310019300049 ()38755196 (PubMedID)
Available from: 2024-05-20 Created: 2024-05-20 Last updated: 2024-09-30Bibliographically approved
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ORCID iD: ORCID iD iconorcid.org/0000-0001-7876-7779

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