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Publications (10 of 116) Show all publications
Lim, B., Kamal, A., Gomez Ramos, B., Adrian Segarra, J. M., Ibarra, I. L., Dignas, L., . . . Mall, M. (2025). Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis. Nature Genetics, 57(3), 668-679
Open this publication in new window or tab >>Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis
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2025 (English)In: Nature Genetics, ISSN 1061-4036, E-ISSN 1546-1718, Vol. 57, no 3, p. 668-679Article in journal (Refereed) Published
Abstract [en]

Cell fate plasticity enables development, yet unlocked plasticity is a cancer hallmark. While transcription master regulators induce lineage-specific genes to restrict plasticity, it remains unclear whether plasticity is actively suppressed by lineage-specific repressors. Here we computationally predict so-called safeguard repressors for 18 cell types that block phenotypic plasticity lifelong. We validated hepatocyte-specific candidates using reprogramming, revealing that prospero homeobox protein 1 (PROX1) enhanced hepatocyte identity by direct repression of alternative fate master regulators. In mice, Prox1 was required for efficient hepatocyte regeneration after injury and was sufficient to prevent liver tumorigenesis. In line with patient data, Prox1 depletion caused hepatocyte fate loss in vivo and enabled the transition of hepatocellular carcinoma to cholangiocarcinoma. Conversely, overexpression promoted cholangiocarcinoma to hepatocellular carcinoma transdifferentiation. Our findings provide evidence for PROX1 as a hepatocyte-specific safeguard and support a model where cell-type-specific repressors actively suppress plasticity throughout life to safeguard lineage identity and thus prevent disease.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Gastroenterology and Hepatology Cell and Molecular Biology Developmental Biology
Identifiers
urn:nbn:se:uu:diva-557458 (URN)10.1038/s41588-025-02081-w (DOI)001420138000001 ()39948437 (PubMedID)2-s2.0-85217764631 (Scopus ID)
Funder
Knut and Alice Wallenberg Foundation, 2018.0218EU, European Research Council, 667273German Research Foundation (DFG), 272983813German Research Foundation (DFG), 314905040German Research Foundation (DFG), 441891347-P10
Available from: 2025-05-27 Created: 2025-05-27 Last updated: 2025-05-27Bibliographically approved
Lupu, I.-E., Grainger, D. E., Kirschnick, N., Weischer, S., Zhao, E., Martinez-Corral, I., . . . Stone, O. A. (2025). Direct specification of lymphatic endothelium from mesenchymal progenitors. Nature Cardiovascular Research, 4(1), 45-63
Open this publication in new window or tab >>Direct specification of lymphatic endothelium from mesenchymal progenitors
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2025 (English)In: Nature Cardiovascular Research, ISSN 2731-0590, Vol. 4, no 1, p. 45-63Article in journal (Refereed) Published
Abstract [en]

During embryogenesis, endothelial cells (ECs) are generally described to arise from a common pool of progenitors termed angioblasts, which diversify through iterative steps of differentiation to form functionally distinct subtypes of ECs. A key example is the formation of lymphatic ECs (LECs), which are thought to arise largely through transdifferentiation from venous endothelium. Opposing this model, here we show that the initial expansion of mammalian LECs is primarily driven by the in situ differentiation of mesenchymal progenitors and does not require transition through an intermediate venous state. Single-cell genomics and lineage-tracing experiments revealed a population of paraxial mesoderm-derived Etv2+Prox1+ progenitors that directly give rise to LECs. Morphometric analyses of early LEC proliferation and migration, and mutants that disrupt lymphatic development supported these findings. Collectively, this work establishes a cellular blueprint for LEC specification and indicates that discrete pools of mesenchymal progenitors can give rise to specialized subtypes of ECs.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Developmental Biology Cell and Molecular Biology Cell Biology
Identifiers
urn:nbn:se:uu:diva-555251 (URN)10.1038/s44161-024-00570-5 (DOI)001388227700001 ()39747454 (PubMedID)2-s2.0-85213841915 (Scopus ID)
Funder
Swedish Research Council, 2020-0269Knut and Alice Wallenberg Foundation, 2018.0218
Available from: 2025-04-25 Created: 2025-04-25 Last updated: 2025-04-25Bibliographically approved
Orlich, M. M., Norrén, A., Desai, M., Holm, A., Kozakewich, H., Schoofs, H., . . . Gängel, K. (2025). Intravital Imaging of Disease Mechanisms in a Mouse Model of CCM Skin Lesions-Brief Report. Arteriosclerosis, Thrombosis and Vascular Biology, 45(1), 113-118
Open this publication in new window or tab >>Intravital Imaging of Disease Mechanisms in a Mouse Model of CCM Skin Lesions-Brief Report
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2025 (English)In: Arteriosclerosis, Thrombosis and Vascular Biology, ISSN 1079-5642, E-ISSN 1524-4636, Vol. 45, no 1, p. 113-118Article in journal (Refereed) Published
Abstract [en]

BACKGROUND: Cerebral cavernous malformation (CCM) is a disease characterized by vascular malformations that primarily develop in the brain. These malformations are prone to leak, and their rupture or thrombotic closure can cause life-threatening hemorrhages and strokes. Mouse models have been instrumental to study the disease, but most cause premature lethality, precluding the investigation of disease mechanisms through intravital microscopy. Current mouse models also do not recapitulate human CCM skin lesions.

METHODS: Endothelial-specific deletion of Ccm3 via systemic tamoxifen application at postnatal day 4 or 5 prolongs survival and induces vascular malformations in the mouse brain and ear skin. CCM skin lesions can also be induced by topical tamoxifen administration directly to the ear. The thin, flat morphology of the ear skin is ideal for intravital microscopy. Dextran dyes and platelet markers allow to study blood flow and blood clot formation in living animals, in real time.

RESULTS: We report that human CCM skin lesions can be recapitulated in a mouse model and that skin lesions share hallmarks of CCM brain lesions. Intravital imaging reveals that CCM skin lesions are slow-flow malformations prone to thrombus formation.

CONCLUSIONS: Intravital imaging of CCM skin lesions expands the toolkit of CCM research and allows longitudinal studies of lesion growth.

Place, publisher, year, edition, pages
American Heart Association, 2025
Keywords
brain, cerebral cavernous malformations 3, intravital microscopy, skin abnormalities, thrombosis
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:uu:diva-546839 (URN)10.1161/ATVBAHA.124.321056 (DOI)001381397600014 ()39569520 (PubMedID)
Funder
Swedish Research Council, 2021-04896Swedish Research Council, 2020-0269Tore Nilsons Stiftelse för medicinsk forskning, 2020-00873Knut and Alice Wallenberg Foundation, 2020.0057German Research Foundation (DFG), 503902844German Research Foundation (DFG), 458322953EU, Horizon 2020, 814316
Available from: 2025-01-13 Created: 2025-01-13 Last updated: 2025-01-13Bibliographically approved
Schoofs, H. & Mäkinen, T. (2024). Genetic targeting of lymphatic endothelial cells in mice: current strategies and future perspectives. International Journal of Developmental Biology, 68(4), 189-198
Open this publication in new window or tab >>Genetic targeting of lymphatic endothelial cells in mice: current strategies and future perspectives
2024 (English)In: International Journal of Developmental Biology, ISSN 0214-6282, E-ISSN 1696-3547, Vol. 68, no 4, p. 189-198Article in journal (Refereed) Published
Abstract [en]

Lymphatic vessels within different organs have diverse developmental origins, depend on different growth factor signaling pathways for their development and maintenance, and display notable tissue-specific adaptations that contribute to their roles in normal physiology and in various diseases. Functional studies on the lymphatic vasculature rely extensively on the use of mouse models that allow selective gene targeting of lymphatic endothelial cells (LECs). Here, we discuss LEC diversity and provide an overview of some of the commonly used LEC-specific inducible Cre lines and induction protocols, outlining essential experimental parameters and their implications. We describe optimized treatment regimens for embryonic, postnatal and adult LECs, efficientlytargeting organs that are commonly studied in lymphatic vascular research, such as the mesentery and skin. We further highlight the anticipated outcomes and limitations associated with each induction scheme and mouse line. The proposed protocols serve as recommendations for laboratories initiating studies involving targeting of the lymphatic vasculature, and aim to promote uniformity in lineage tracing and functional studies within the lymphatic vascular field.

Place, publisher, year, edition, pages
UPV/EHU Press, 2024
Keywords
Cre/loxP, endothelium, lineage tracing, lymphatic vasculature, tamoxifen
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:uu:diva-555805 (URN)10.1387/ijdb.230215tm (DOI)001470424800005 ()39177098 (PubMedID)2-s2.0-86000334179 (Scopus ID)
Funder
Knut and Alice Wallenberg Foundation, 2018.0218Swedish Research Council, 2020-02692Swedish Cancer Society, 22 2025 PjEU, Horizon 2020
Available from: 2025-05-06 Created: 2025-05-06 Last updated: 2025-05-06Bibliographically approved
Garcia-Gonzalez, I., Rocha, S. F., Hamidi, A., Garcia-Ortega, L., Regano, A., Sanchez-Munoz, M. S., . . . Benedito, R. (2024). iSuRe-HadCre is an essential tool for effective conditional genetics. Nucleic Acids Research, 52(13)
Open this publication in new window or tab >>iSuRe-HadCre is an essential tool for effective conditional genetics
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2024 (English)In: Nucleic Acids Research, ISSN 0305-1048, E-ISSN 1362-4962, Vol. 52, no 13Article in journal (Refereed) Published
Abstract [en]

Methods for modifying gene function at high spatiotemporal resolution in mice have revolutionized biomedical research, with Cre-loxP being the most widely used technology. However, the Cre-loxP technology has several drawbacks, including weak activity, leakiness, toxicity, and low reliability of existing Cre-reporters. This is mainly because different genes flanked by loxP sites (floxed) vary widely in their sensitivity to Cre-mediated recombination. Here, we report the generation, validation, and utility of iSuRe-HadCre, a new dual Cre-reporter and deleter mouse line that avoids these drawbacks. iSuRe-HadCre achieves this through a novel inducible dual-recombinase genetic cascade that ensures that cells expressing a fluorescent reporter had only transient Cre activity, that is nonetheless sufficient to effectively delete floxed genes. iSuRe-HadCre worked reliably in all cell types and for the 13 floxed genes tested. This new tool will enable the precise, efficient, and trustworthy analysis of gene function in entire mouse tissues or in single cells. Graphical Abstract

Place, publisher, year, edition, pages
Oxford University Press, 2024
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
urn:nbn:se:uu:diva-541149 (URN)10.1093/nar/gkae472 (DOI)001241845500001 ()38850155 (PubMedID)
Funder
EU, European Research Council, ERC-2020-COG- 101001814Knut and Alice Wallenberg Foundation, 2018.0218
Available from: 2024-10-29 Created: 2024-10-29 Last updated: 2024-10-29Bibliographically approved
Petkova, M., Ferby, I. & Mäkinen, T. (2024). Lymphatic malformations: mechanistic insights and evolving therapeutic frontiers. Journal of Clinical Investigation, 134(6), Article ID e172844.
Open this publication in new window or tab >>Lymphatic malformations: mechanistic insights and evolving therapeutic frontiers
2024 (English)In: Journal of Clinical Investigation, ISSN 0021-9738, E-ISSN 1558-8238, Vol. 134, no 6, article id e172844Article in journal (Refereed) Published
Abstract [en]

The lymphatic vascular system is gaining recognition for its multifaceted role and broad pathological significance. Once perceived as a mere conduit for interstitial fluid and immune cell transport, recent research has unveiled its active involvement in critical physiological processes and common diseases, including inflammation, autoimmune diseases, and atherosclerosis. Consequently, abnormal development or functionality of lymphatic vessels can result in serious health complications. Here, we discuss lymphatic malformations (LMs), which are localized lesions that manifest as fluid -filled cysts or extensive infiltrative lymphatic vessel overgrowth, often associated with debilitating, even life -threatening, consequences. Genetic causes of LMs have been uncovered, and several promising drug -based therapies are currently under investigation and will be discussed.

Place, publisher, year, edition, pages
American Society For Clinical Investigation, 2024
National Category
Immunology in the medical area
Identifiers
urn:nbn:se:uu:diva-526896 (URN)10.1172/JCI172844 (DOI)001190901900017 ()38488007 (PubMedID)
Funder
Knut and Alice Wallenberg Foundation, 2018.0218Knut and Alice Wallenberg Foundation, 2020.0057Swedish Research Council, 2020-02692Swedish Cancer Society, 22 2025 PjGöran Gustafsson Foundation for promotion of scientific research at Uppala University and Royal Institute of TechnologyEU, Horizon 2020
Available from: 2024-04-19 Created: 2024-04-19 Last updated: 2024-04-19Bibliographically approved
Schnabellehner, S., Kraft, M., Schoofs, H., Ortsäter, H. & Mäkinen, T. (2024). Penile cavernous sinusoids are Prox1-positive hybrid vessels. Vascular Biology, 6(1), Article ID e230014.
Open this publication in new window or tab >>Penile cavernous sinusoids are Prox1-positive hybrid vessels
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2024 (English)In: Vascular Biology, E-ISSN 2516-5658, Vol. 6, no 1, article id e230014Article in journal (Refereed) Published
Abstract [en]

Endothelial cells (ECs) of blood and lymphatic vessels have distinct identity markers that define their specialized functions. Recently, hybrid vasculatures with both blood and lymphatic vessel-specific features have been discovered in multiple tissues. Here, we identify the penile cavernous sinusoidal vessels (pc-Ss) as a new hybrid vascular bed expressing key lymphatic EC identity genes Prox1, Vegfr3,and Lyve1. Using single-cell transcriptome data of human corpus cavernosum tissue, we found heterogeneity within pc-S endothelia and observed distinct transcriptional alterations related to inflammatory processes in hybrid ECs in erectile dysfunction associated with diabetes. Molecular, ultrastructural, and functional studies further established hybrid identity of pc-Ss in mouse, and revealed their morphological adaptations and ability to perform lymphatic-like function in draining high-molecular-weight tracers. Interestingly, we found that inhibition of the key lymphangiogenic growth factor VEGF-C did not block the development of pc-Ss in mice, distinguishing them from other lymphatic and hybrid vessels analyzed so far. Our findings provide a detailed molecular characterization of hybrid pc-Ss and pave the way for the identification of molecular targets for therapies in conditions of dysregulated penile vasculature, including erectile dysfunction.

Place, publisher, year, edition, pages
Bioscientifica, 2024
National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:uu:diva-537224 (URN)10.1530/vb-23-0014 (DOI)38051669 (PubMedID)
Available from: 2024-08-29 Created: 2024-08-29 Last updated: 2025-01-15Bibliographically approved
Mohanakrishnan, V., Sivaraj, K. K., Jeong, H.-W., Bovay, E., Dharmalingam, B., Bixel, M. G., . . . Adams, R. H. (2024). Specialized post-arterial capillaries facilitate adult bone remodelling. Nature Cell Biology, 26(12)
Open this publication in new window or tab >>Specialized post-arterial capillaries facilitate adult bone remodelling
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2024 (English)In: Nature Cell Biology, ISSN 1465-7392, E-ISSN 1476-4679, Vol. 26, no 12Article in journal (Refereed) Published
Abstract [en]

The vasculature of the skeletal system is crucial for bone formation, homoeostasis and fracture repair, yet the diversity and specialization of bone-associated vessels remain poorly understood. Here we identify a specialized type of post-arterial capillary, termed type R, involved in bone remodelling. Type R capillaries emerge during adolescence around trabecular bone, possess a distinct morphology and molecular profile, and are associated with osteoprogenitors and bone-resorbing osteoclasts. Endothelial cell-specific overexpression of the transcription factor DACH1 in postnatal mice induces a strong increase in arteries and type R capillaries, leading to local metabolic changes and enabling trabecular bone formation in normally highly hypoxic areas of the diaphysis. Indicating potential clinical relevance of type R capillaries, these vessels respond to anti-osteoporosis treatments and emerge during ageing inside porous structures that are known to weaken compact bone. Our work outlines fundamental principles of vessel specialization in the developing, adult and ageing skeletal system.

Place, publisher, year, edition, pages
Springer Nature, 2024
National Category
Cell Biology
Identifiers
urn:nbn:se:uu:diva-546205 (URN)10.1038/s41556-024-01545-1 (DOI)001352565800001 ()39528700 (PubMedID)2-s2.0-85208941142 (Scopus ID)
Funder
EU, European Research Council, AdG 101139772Knut and Alice Wallenberg Foundation, 2020.0057Swedish Research Council, 2020-02692Max Planck SocietyGerman Research Foundation (DFG), 394046768NIH (National Institutes of Health), R01-HL128503NIH (National Institutes of Health), T32GM007276Swedish Research Council, 2020-02298
Available from: 2025-01-08 Created: 2025-01-08 Last updated: 2025-04-14Bibliographically approved
Stritt, S., Nurden, P., Nurden, A. T., Schved, J.-F., Bordet, J.-C., Roux, M., . . . Giansily-Blaizot, M. (2023). APOLD1 loss causes endothelial dysfunction involving cell junctions, cytoskeletal architecture, and Weibel-Palade bodies, while disrupting hemostasis. Haematologica, 108(3), 772-784
Open this publication in new window or tab >>APOLD1 loss causes endothelial dysfunction involving cell junctions, cytoskeletal architecture, and Weibel-Palade bodies, while disrupting hemostasis
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2023 (English)In: Haematologica, ISSN 0390-6078, E-ISSN 1592-8721, Vol. 108, no 3, p. 772-784Article in journal (Refereed) Published
Abstract [en]

Vascular homeostasis is impaired in various diseases thereby contributing to the progression of their underlying pathologies. The endothelial immediate early gene Apolipoprotein L domain-containing 1 (APOLD1) helps to regulate endothelial function. However, its precise role in endothelial cell biology remains unclear. We have localized APOLD1 to endothelial cell contacts and to Weibel-Palade bodies (WPB) where it associates with von Willebrand factor (VWF) tubules. Silencing of APOLD1 in primary human endothelial cells disrupted the cell junction-cytoskeletal interface, thereby altering endothelial permeability accompanied by spontaneous release of WPB contents. This resulted in an increased presence of WPB cargoes, notably VWF and angiopoietin-2 in the extracellular medium. Autophagy flux, previously recognized as an essential mechanism for the regulated release of WPB, was impaired in the absence of APOLD1. In addition, we report APOLD1 as a candidate gene for a novel inherited bleeding disorder across three generations of a large family in which an atypical bleeding diathesis was associated with episodic impaired microcirculation. A dominant heterozygous nonsense APOLD1:p.R49* variant segregated to affected family members. Compromised vascular integrity resulting from an excess of plasma angiopoietin-2, and locally impaired availability of VWF may explain the unusual clinical profile of APOLD1:p.R49* patients. In summary, our findings identify APOLD1 as an important regulator of vascular homeostasis and raise the need to consider testing of endothelial cell function in patients with inherited bleeding disorders without apparent platelet or coagulation defects.

Place, publisher, year, edition, pages
Ferrata Storti Foundation, 2023
National Category
Cell and Molecular Biology Cardiology and Cardiovascular Disease
Identifiers
urn:nbn:se:uu:diva-489046 (URN)10.3324/haematol.2022.280816 (DOI)001052101600015 ()35638551 (PubMedID)
Funder
Knut and Alice Wallenberg Foundation, 2018.0218Swedish Research Council, 2020-02692German Research Foundation (DFG), STR 1538/1-1
Available from: 2022-11-25 Created: 2022-11-25 Last updated: 2025-02-10Bibliographically approved
Mäkinen, T. (2023). Hemogenic activity of lymphatic endothelium unleashed. Nature Cardiovascular Research, 2(3), 230-231
Open this publication in new window or tab >>Hemogenic activity of lymphatic endothelium unleashed
2023 (English)In: Nature Cardiovascular Research, E-ISSN 2731-0590, Vol. 2, no 3, p. 230-231Article in journal, Editorial material (Other academic) Published
National Category
Cardiology and Cardiovascular Disease
Identifiers
urn:nbn:se:uu:diva-516732 (URN)10.1038/s44161-023-00231-z (DOI)001124835200014 ()
Available from: 2023-11-28 Created: 2023-11-28 Last updated: 2025-02-10Bibliographically approved
Projects
Organ- and vessel type-specific lymphatic vascular development: implications for vessel function and disease [2014-03535_VR]; Uppsala UniversityOrgan-specific origins, regulation and functions of lymphatic vessels in development and disease [2020-02692_VR]; Uppsala University; Publications
Mohanakrishnan, V., Sivaraj, K. K., Jeong, H.-W., Bovay, E., Dharmalingam, B., Bixel, M. G., . . . Adams, R. H. (2024). Specialized post-arterial capillaries facilitate adult bone remodelling. Nature Cell Biology, 26(12)
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0002-9338-1257

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