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Publications (10 of 126) Show all publications
Asad, S., Ahl, D., Suárez-López, Y. d., Erdélyi, M., Phillipson, M. & Teleki, A. (2025). Click chemistry-based bioconjugation of iron oxide nanoparticles. Small, 11, Article ID 2407883.
Open this publication in new window or tab >>Click chemistry-based bioconjugation of iron oxide nanoparticles
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2025 (English)In: Small, ISSN 1613-6810, E-ISSN 1613-6829, Vol. 11, article id 2407883Article in journal (Refereed) Published
Abstract [en]

Superparamagnetic iron oxide nanoparticles (SPIONs) exhibit unique properties for diverse biomedical applications, including drug delivery and diagnostic imaging. Actively targeted SPIONs enhance delivery to diseased sites, reducing side effects and enhancing treatment efficacy. However, development of reproducible functionalization protocols is challenged by the erratic behavior of nanoparticles in suspensions, such as agglomeration and sedimentation. In this study, we develop and systematically optimize a functionalization method to attach the Fc-region of antibodies onto silica coated SPIONs via click chemistry, ensuring controlled ligand orientation on the particle surface. The synthesis and successive modifications of silica coated SPIONs with organic moieties is presented resulting in the final click conjugation with anti-ICAM1 antibodies. These antibodies target ICAM1, upregulated on epithelial cell surfaces during gastrointestinal inflammation. Thermogravimetric analysis and infrared spectroscopy confirm successful SPION functionalization after each modification step. Cell viability assessment indicates no adverse effects of bioconjugated particles. Quantitative elemental analysis reveals significantly higher iron concentration in inflammation-induced Caco-2 cells exposed to ICAM1-modified particles compared to non-conjugated counterparts. Furthermore, laser scanning confocal microscopy of these cells suggests surface interaction and internalization of bioconjugated SPIONs, underscoring their potential for targeted imaging and therapy in inflammatory diseases.

Place, publisher, year, edition, pages
John Wiley & Sons, 2025
Keywords
inflammatory bowel disease, diagnostics, antibodies, targeting, gastrointestinal tract
National Category
Materials Chemistry Pharmaceutical Sciences
Research subject
Pharmaceutical Science
Identifiers
urn:nbn:se:uu:diva-532429 (URN)10.1002/smll.202407883 (DOI)001418971500001 ()39924809 (PubMedID)
Funder
EU, Horizon 2020, 101002582
Available from: 2024-06-19 Created: 2024-06-19 Last updated: 2025-05-21Bibliographically approved
Gulyás, K., Zhou, L., Salamonsen, D., Prester, A., Bartels, K., Bosman, R., . . . Erdélyi, M. (2025). Dynamically chiral phosphonic acid-type metallo-β-lactamase inhibitors. Communications Chemistry, 8(1), Article ID 119.
Open this publication in new window or tab >>Dynamically chiral phosphonic acid-type metallo-β-lactamase inhibitors
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2025 (English)In: Communications Chemistry, E-ISSN 2399-3669, Vol. 8, no 1, article id 119Article in journal (Refereed) Published
Abstract [en]

Antibiotic resistance is a growing global health threat that risks the lives of millions. Among the resistance mechanisms, that mediated by metallo-beta-lactamases is of particular concern as these bacterial enzymes dismantle most beta-lactam antibiotics, which are our widest applied and cheapest to produce antibiotic agents. So far, no clinically applicable metallo-beta-lactamase inhibitors are available. Aiming to adapt to structural variations, we introduce the inhibitor concept: dynamically chiral phosphonic acids. We demonstrate that they are straightforward to synthesize, penetrate bacterial membranes, inhibit the metallo-beta-lactamase enzymes NDM-1, VIM-2 and GIM-1, and are non-toxic to human cells. Mimicking the transition state of beta-lactam hydrolysis, they target the Zn ions of the metallo-beta-lactamase active site. As a unique feature, both of their stereoisomers bind metallo-beta-lactamases, which provides them unparalleled adaptability to the structural diversity of these enzymes, and may allow them to hamper bacteria's ability for resistance development.

Place, publisher, year, edition, pages
Springer Nature, 2025
National Category
Microbiology
Identifiers
urn:nbn:se:uu:diva-555791 (URN)10.1038/s42004-025-01510-5 (DOI)001471182500001 ()40253435 (PubMedID)2-s2.0-105003195224 (Scopus ID)
Funder
Swedish National Infrastructure for Computing (SNIC), NAISS 2023/5-392Swedish National Infrastructure for Computing (SNIC), 2024/5-583Swedish Research Council, 2013-8804Swedish Research Council, 2024-05496
Available from: 2025-05-13 Created: 2025-05-13 Last updated: 2025-05-13Bibliographically approved
Mayeka, J. G., Atilaw, Y., Shadrack, D. M., Sarnyai, F., Csala, M., Nemeth, K., . . . Munissi, J. J. E. (2025). Flavonoids from the leaves of Monanthotaxis filipes modulate PCSK9 and LDLR. Scientific African, 28, Article ID e02709.
Open this publication in new window or tab >>Flavonoids from the leaves of Monanthotaxis filipes modulate PCSK9 and LDLR
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2025 (English)In: Scientific African, ISSN 2468-2276, Vol. 28, article id e02709Article in journal (Refereed) Published
Abstract [en]

Proprotein convertase subtilisin/kexin type 9 (PCSK9) plays a crucial role in the regulation of blood cholesterol levels. Its inhibition attenuates hypercholesterolemia and hence is a viable approach for the management of atherosclerotic cardiovascular disease (ASCVD). We evaluated the flavonoids of the leaves of Monanthotaxis filipes P.H. Hoekstra (Annonaceae) for their effect on PCSK9 and low-density lipoprotein receptor (LDLR) expression at the mRNA level in HepG2 cells using quantitative real-time PCR analysis and for their influence on protein expression by ELISA. Six flavonoids, including two chalcones (1, 5), three flavones (24), and one flavanone (6), were isolated by chromatographic techniques and identified by spectroscopic (NMR, IR, UV, MS) analyses. 2′,3′,4′,6′-Tetramethoxychalcone (1) reduced the PCSK9 protein amount and altered LDLR both on mRNA and protein levels, 6,7,8-trimethoxyflavone (2) inhibited PCSK9 both on mRNA and protein levels but did not change the amount of LDLR in HepG2 cells, whereas 2ʹ,4ʹ-dihydroxy-6ʹ-methoxy-3ʹ,5ʹ-dimethylchalcone (5) decreased PCSK9 and upregulated LDLR protein expression. Thus, chalcones 1 and 5, flavones 24, and flavanone 6 were shown to be promising compounds for the management of cardiovascular disease. Molecular dynamics simulations suggest that an allosteric mechanism underlies the inhibitory effect of 2 on PCSK9. In contrast, the pronounced activity of 5 is due to the interaction of its benzene ring with the Cys358, Pro438, Val460 and Trp461 residues of the catalytic site, as proposed by Molecular Mechanics Poisson Boltzmann surface area (MM-PBSA) analyses. Our results showed that chalcone 5 might be studied further for the management of atherosclerotic cardiovascular disease (ASCVD).

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
Monanthotaxis filipes, Flavonoid, Chalcone, PCSK9 inhibitor, LDLR expression, Atherosclerosis
National Category
Cardiology and Cardiovascular Disease
Identifiers
urn:nbn:se:uu:diva-556659 (URN)10.1016/j.sciaf.2025.e02709 (DOI)001478548700001 ()2-s2.0-105003131626 (Scopus ID)
Funder
Swedish Research Council, 2019-03715
Available from: 2025-05-16 Created: 2025-05-16 Last updated: 2025-05-16Bibliographically approved
Poongavanam, V., Peintner, S., Abeje, Y., Kölling, F., Meibom, D., Erdélyi, M. & Kihlberg, J. (2025). Linker-Determined Folding and Hydrophobic Interactions Explain a Major Difference in PROTAC Cell Permeability. ACS Medicinal Chemistry Letters, 16(4), 681-687
Open this publication in new window or tab >>Linker-Determined Folding and Hydrophobic Interactions Explain a Major Difference in PROTAC Cell Permeability
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2025 (English)In: ACS Medicinal Chemistry Letters, E-ISSN 1948-5875, Vol. 16, no 4, p. 681-687Article in journal (Refereed) Published
Abstract [en]

The ability to adopt folded conformations that have a low solvent-accessible 3D polar surface area has been found to be important for PROTACs to display a high passive cell permeability. We have studied two VHL PROTACs that differ only by the replacement of two methylene groups in the linker by oxygen atoms but that displayed vast differences in their cell permeability. MD simulations and NMR spectroscopy revealed an unexpected, environment-dependent conformational behavior for the low-permeability PROTAC that has an alkyl linker. Hydrophobic interactions enforced extended and polar conformations for this PROTAC in nonpolar media, explaining its low cell permeability. In water, hydrophobic collapse around the linker led to folded and less polar conformations. In contrast, the highly permeable PROTAC having a PEG linker adopted conformations of similar shapes and polarities in polar and nonpolar environments.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2025
Keywords
PROTAC, cell permeability, MD simulations, NMR spectroscopy, hydrophobic collapse
National Category
Physical Chemistry
Identifiers
urn:nbn:se:uu:diva-556765 (URN)10.1021/acsmedchemlett.5c00068 (DOI)001446667700001 ()40236549 (PubMedID)2-s2.0-105002390785 (Scopus ID)
Funder
Swedish Research Council, 2021-04747Swedish Research Council, 2024-05496Vinnova
Available from: 2025-05-20 Created: 2025-05-20 Last updated: 2025-05-20Bibliographically approved
Kiganda, I., Wieske, L. H. E., Nchiozem-Ngnitedem, V.-A., Chalo, D., Umereweneza, D., Ndakala, A., . . . Erdelyi, M. (2024). Antimicrobial Dihydroflavonols and Isoflavans Isolated from the Root Bark of Dalbergia gloveri. Journal of Natural Products, 87(9), 2263-2271
Open this publication in new window or tab >>Antimicrobial Dihydroflavonols and Isoflavans Isolated from the Root Bark of Dalbergia gloveri
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2024 (English)In: Journal of Natural Products, ISSN 0163-3864, E-ISSN 1520-6025, Vol. 87, no 9, p. 2263-2271Article in journal (Refereed) Published
Abstract [en]

Three new dihydroflavonols, gloverinols A–C (13), a new flavon-3-ol, gloverinol D (4), two new isoflavans, gloveriflavan A (5) and B (6), and seven known compounds were isolated from the root bark of Dalbergia gloveri. The structures of the isolates were elucidated by using NMR, ECD, and HRESIMS data analyses. Among the isolated compounds, gloverinol B (2), gloveriflavan B (6), and 1-(2,4-dihydroxyphenyl)-3-hydroxy-3-(4-hydroxyphenyl)-1-propanone (10) were the most active against Staphylococcus aureus, with MIC values of 9.2, 18.4, and 14.2 μM, respectively.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2024
National Category
Organic Chemistry
Identifiers
urn:nbn:se:uu:diva-541418 (URN)10.1021/acs.jnatprod.4c00690 (DOI)001310371100001 ()39255387 (PubMedID)
Funder
Swedish Research Council, 2019-03715Uppsala University
Available from: 2024-10-30 Created: 2024-10-30 Last updated: 2024-10-30Bibliographically approved
Kiganda, I., Bogaerts, J., Wieske, L. H. .., Deyou, T., Atilaw, Y., Uwamariya, C., . . . Erdélyi, M. (2024). Antiviral Rotenoids and Isoflavones Isolated from Millettia oblata ssp. teitensis. Journal of Natural Products, 87(4), 1003-1012
Open this publication in new window or tab >>Antiviral Rotenoids and Isoflavones Isolated from Millettia oblata ssp. teitensis
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2024 (English)In: Journal of Natural Products, ISSN 0163-3864, E-ISSN 1520-6025, Vol. 87, no 4, p. 1003-1012Article in journal (Refereed) Published
Abstract [en]

Three new (13) and six known rotenoids (510), along with three known isoflavones (1113), were isolated from the leaves of Millettia oblata ssp. teitensis. A new glycosylated isoflavone (4), four known isoflavones (1418), and one known chalcone (19) were isolated from the root wood extract of the same plant. The structures were elucidated by NMR and mass spectrometric analyses. The absolute configuration of the chiral compounds was established by a comparison of experimental ECD and VCD data with those calculated for the possible stereoisomers. This is the first report on the use of VCD to assign the absolute configuration of rotenoids. The crude leaves and root wood extracts displayed anti-RSV (human respiratory syncytial virus) activity with IC50 values of 0.7 and 3.4 μg/mL, respectively. Compounds 6, 8, 10, 11, and 14 showed anti-RSV activity with IC50 values of 0.4–10 μM, while compound 3 exhibited anti-HRV-2 (human rhinovirus 2) activity with an IC50 of 4.2 μM. Most of the compounds showed low cytotoxicity for laryngeal carcinoma (HEp-2) cells; however compounds 3, 11, and 14 exhibited low cytotoxicity also in primary lung fibroblasts. This is the first report on rotenoids showing antiviral activity against RSV and HRV viruses.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2024
National Category
Organic Chemistry Pharmacology and Toxicology
Identifiers
urn:nbn:se:uu:diva-541925 (URN)10.1021/acs.jnatprod.3c01288 (DOI)001200633100001 ()38579352 (PubMedID)
Funder
Swedish Research Council, 2019-03715Swedish Research Council, 2021-06386Swedish Research Council, 2018-03918
Available from: 2024-11-07 Created: 2024-11-07 Last updated: 2024-11-07Bibliographically approved
Matundura, J. O., Mollel, J. T., Miah, M., Said, J., Omosa, L. K., Kalenga, T. M., . . . Yenesew, A. (2024). Bioactive abietenolide diterpenes from Suregada procera. Fitoterapia, 179, Article ID 106217.
Open this publication in new window or tab >>Bioactive abietenolide diterpenes from Suregada procera
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2024 (English)In: Fitoterapia, ISSN 0367-326X, E-ISSN 1873-6971, Vol. 179, article id 106217Article in journal (Refereed) Published
Abstract [en]

The phytochemical investigation of the leaves and the roots of Suregada procera afforded the new ent-abietane diterpenoid sureproceriolide A (1) along with the known secondary metabolites 8,14β:11,12α-diepoxy-13(15)-abietane-16,12-olid (2), jolkinolide A (3), jolkinolide E (4), ent-pimara-8(14),15-dien-19-oic acid (5), sitosterol (6), oleana-9(11):12-dien-3β-ol (7), and oleic acid (8). Their structures were elucidated by NMR spectroscopic and mass spectrometric analyses, and the structure of jolkinolide A (3) was confirmed by single-crystal X-ray diffraction analysis. Sureproceriolide A (1) showed modest activity against the Gram-positive bacterium Staphylococcus lugdunensis (MIC = 31.44 μM), and sitosterol (6) against the Gram-negative bacterium Porphyromonas gingivalis (IC50 = 45.37 μM). Jolkinolide A (3) and E (4) as well as sitosterol (6) inhibited the release of NOS (IMR-90 cells), TNF-α (HaCaT cells) and NF-κB (HaCaT cells), with IC50 values of 0.43, 3.21, and 10.32 μM, respectively. Compound 6 showed antitumoral activity against SK-MEL-28 (IC50 = 20.66 μM) and CCD-13Lu (IC50 = 24.70 μM) cell lines, with no cytotoxic effect against the prostate cells PrEC (CC50 > 300 μM).

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Suregada procera, Euphorbiaceae, Abietanolide, Antibacterial, Anti-inflammatory, Antitumoral
National Category
Organic Chemistry Pharmacology and Toxicology
Identifiers
urn:nbn:se:uu:diva-540656 (URN)10.1016/j.fitote.2024.106217 (DOI)001327143800001 ()39303767 (PubMedID)
Funder
Swedish Research Council, 2019–03715
Available from: 2024-10-21 Created: 2024-10-21 Last updated: 2024-10-21Bibliographically approved
Akbaba, S., Steinke, T., Vogel, L., Engelage, E., Erdélyi, M. & Huber, S. M. (2024). Elucidating the Binding Mode of Sulfur- and Selenium-Based Cationic Chalcogen-Bond Donors. Chemistry - A European Journal, 30(33), Article ID e202400608.
Open this publication in new window or tab >>Elucidating the Binding Mode of Sulfur- and Selenium-Based Cationic Chalcogen-Bond Donors
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2024 (English)In: Chemistry - A European Journal, ISSN 0947-6539, E-ISSN 1521-3765, Vol. 30, no 33, article id e202400608Article in journal (Refereed) Published
Abstract [en]

For a comparison of the interaction modes of various chalcogen-bond donors, 2-chalcogeno-imidazolium salts have been designed, synthesized, and studied by single crystal X-ray diffraction, solution NMR and DFT as well as for their ability to act as activators in an SN1-type substitution reaction. Their interaction modes in solution were elucidated based on NMR diffusion and chemical shift perturbation experiments, which were supported by DFT-calculations. Our finding is that going from lighter to the heavier chalcogens, hydrogen bonding plays a less, while chalcogen bonding an increasingly important role for the coordination of anions. Anion-pi interactions also show importance, especially for the sulfur and selenium derivatives. The noncovalent interaction modes of 2-chalcogeno-imidazolium salts have been studied in the solid state, in solution by DOSY, NMR titration and activation experiments, as well as in silico. A combined anion-pi /chalcogen bonding interaction mode prevails for most compounds. For the tellurium derivatives, the pure chalcogen bonding gains in importance, while hydrogen bonding becomes more relevant for the sulfur analogs. image

Place, publisher, year, edition, pages
Wiley-VCH Verlagsgesellschaft, 2024
Keywords
Chalcogen Bonding, Anion Binding, Hydrogen Bonding, Anion-pi, Organocatalysis
National Category
Organic Chemistry
Identifiers
urn:nbn:se:uu:diva-541380 (URN)10.1002/chem.202400608 (DOI)001223675800001 ()38604947 (PubMedID)
Funder
EU, Horizon 2020, 638337Swedish Research Council, 2020-03431
Available from: 2024-11-05 Created: 2024-11-05 Last updated: 2024-11-05Bibliographically approved
Apprato, G., Poongavanam, V., Jimenez, D. G., Atilaw, Y., Erdélyi, M., Ermondi, G., . . . Kihlberg, J. (2024). Exploring the chemical space of orally bioavailable PROTACs. Drug Discovery Today, 29(4), Article ID 103917.
Open this publication in new window or tab >>Exploring the chemical space of orally bioavailable PROTACs
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2024 (English)In: Drug Discovery Today, ISSN 1359-6446, E-ISSN 1878-5832, Vol. 29, no 4, article id 103917Article, review/survey (Refereed) Published
Abstract [en]

A principal challenge in the discovery of proteolysis targeting chimeras (PROTACs) as oral medications is their bioavailability. To facilitate drug design, it is therefore essential to identify the chemical space where orally bioavailable PROTACs are more likely to be situated. To this aim, we extracted structure-bioavailability insights from published data using traditional 2D descriptors, thereby shedding light on their potential and limitations as drug design tools. Subsequently, we describe cuttingedge experimental, computational and hybrid design strategies based on 3D descriptors, which show promise for enhancing the probability of discovering PROTACs with high oral bioavailability.

Place, publisher, year, edition, pages
Elsevier, 2024
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-527996 (URN)10.1016/j.drudis.2024.103917 (DOI)001208782700001 ()38360147 (PubMedID)
Funder
Swedish Research Council, 2021-04747
Available from: 2024-05-16 Created: 2024-05-16 Last updated: 2024-05-16Bibliographically approved
Kondratieva, A., Palica, K., Frohlich, C., Hovd, R. R., Leiros, H.-K. S., Erdélyi, M. & Bayer, A. (2024). Fluorinated captopril analogues inhibit metallo-ll-lactamases and facilitate structure determination of NDM-1 binding pose. European Journal of Medicinal Chemistry, 266, Article ID 116140.
Open this publication in new window or tab >>Fluorinated captopril analogues inhibit metallo-ll-lactamases and facilitate structure determination of NDM-1 binding pose
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2024 (English)In: European Journal of Medicinal Chemistry, ISSN 0223-5234, E-ISSN 1768-3254, Vol. 266, article id 116140Article in journal (Refereed) Published
Abstract [en]

Bacterial resistance to the majority of clinically used ll-lactam antibiotics is a global health threat and, consequently, the driving force for the development of metallo-ll-lactamase (MBL) inhibitors. The rapid evolution of new MBLs calls for new strategies and tools for inhibitor development. In this study, we designed and developed a series of trifluoromethylated captopril analogues as probes for structural studies of enzyme-inhibitor binding. The new compounds showed activity comparable to the non-fluorinated inhibitors against the New Delhi Metallo-ll-lactamase-1 (NDM-1). The most active compound, a derivative of D-captopril, exhibited an IC50 value of 0.3 mu M. Several compounds demonstrated synergistic effects, restoring the effect of meropenem and reducing the minimum inhibitory concentration (MIC) values in NDM-1 (up to 64-fold), VIM-2 (up to 8-fold) and IMP-26 (up to 8-fold) harbouring Escherichia coli. NMR spectroscopy and molecular docking of one representative inhibitor determined the binding pose in NDM-1, demonstrating that fluorinated analogues of inhibitors are a valuable tool for structural studies of MBL-inhibitor complexes.

Place, publisher, year, edition, pages
Elsevier, 2024
Keywords
Metallo-ll-lactamases, NDM-1, Inhibitors, Thiols, NMR binding -studies, VIM-2, IMP-26
National Category
Organic Chemistry Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-525052 (URN)10.1016/j.ejmech.2024.116140 (DOI)001171009000001 ()38242072 (PubMedID)
Funder
Swedish Research Council, NAISS 2023/5-392Swedish Research Council, 2022-06725Swedish Research Council, 2018-05973
Available from: 2024-03-19 Created: 2024-03-19 Last updated: 2025-02-20Bibliographically approved
Projects
Inhibition studies of metallo-beta-lactamases as target proteins of antibiotic resistance [2013-08804_VR]; Uppsala UniversityParamagnetic ligand tagging, a new tool in drug development [2016-05978_VR]; Uppsala UniversityPARAMAGNETIC LIGAND TAGGING, A NEW TOOL IN CHEMISTRY AND BIOLOGY [2016-03602_VR]; Uppsala UniversityExploration of East African Herbal Resources to Control Major Health Challenges [2016-05857_VR]; Uppsala UniversityExploration of East African Medicinal Herbs in the Search for Novel Antibacterial Agents [2019-03715_VR]; Uppsala University; Publications
Kiganda, I., Wieske, L. H. E., Nchiozem-Ngnitedem, V.-A., Chalo, D., Umereweneza, D., Ndakala, A., . . . Erdelyi, M. (2024). Antimicrobial Dihydroflavonols and Isoflavans Isolated from the Root Bark of Dalbergia gloveri. Journal of Natural Products, 87(9), 2263-2271
Development of a Universal Enantioselective Halofunctionalization Strategy [2020-03431_VR]; Uppsala University; Publications
Darling, W. T. P., Wieske, H. H. E., Cook, D. T., Aliev, A. E., Caron, L., Humphrys, E. J., . . . Tabor, A. B. (2024). The Influence of Disulfide, Thioacetal and Lanthionine-Bridges on the Conformation of a Macrocyclic Peptide. Chemistry - A European Journal, 30(50)
Chemical mechanisms of Life [2022-06628_VR]; Uppsala University; Publications
Hansen, C. E., Konings, J., Toth, G., Chornyi, S., Karsten, M., van het Hof, B., . . . Kooij, G. (2025). Spatial mapping of the AA-PGE2-EP axis in multiple sclerosis lesions. Acta Neuropathologica, 149(1), Article ID 39.
Pushing the limits of solution NMR structure determination [2024-05496_VR]; Uppsala University
Organisations
Identifiers
ORCID iD: ORCID iD iconorcid.org/0000-0003-0359-5970

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