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Title [sv]
Detektion och kvantifiering av små förändringar i magnetresonans-neuroimaging
Title [en]
Subtle Change Detection and Quantification in Magnetic Resonance Neuroimaging
Abstract [sv]
Many brain injuries and diseases can damage brain cells, which can lead to loss of nerve cells and loss of brain volume. Even slight loss of nerve cells can give severe neurological and cognitive symptoms. The increasing resolution in magnetic resonance neuroimaging allows detection and quantification of very small volume changes. Due to the enormous amount of information in a typical MR brain volume scan, interactive tools for computer aided analysis are absolutely essential for subtle change detection. Demonstration, localization and quantification of volume loss are needed in brain injuries (e.g. brain trauma) and in neurodegenerative diseases (e.g. many hereditary neurological diseases and dementia). Interactive tools available today are not sensitive enough for detection of small general or focal volume loss.We propose a model based approach for change detection and quantification in neuroimaging. Extensive testing and evaluation is crucial in this project since the demands on the method´s precision and accuracy, as well as reliability are very high. The successful outcome of this project will allow early diagnosis, detailed correct diagnosis, and accurate and precise analysis of treatment response of mild traumatic brain injury, neurodegenerative diseases including dementia, intracranial aneurysms and brain tumors.
Publications (1 of 1) Show all publications
Dhara, A. K., Arvids, E., Fahlström, M., Wikström, J., Larsson, E.-M. & Strand, R. (2018). Interactive segmentation of glioblastoma for post-surgical treatment follow-up. In: 2018 24th International Conference on Pattern Recognition (ICPR): . Paper presented at ICPR 2018, August 20–24, Beijing, China (pp. 1199-1204). Institute of Electrical and Electronics Engineers (IEEE)
Open this publication in new window or tab >>Interactive segmentation of glioblastoma for post-surgical treatment follow-up
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2018 (English)In: 2018 24th International Conference on Pattern Recognition (ICPR), Institute of Electrical and Electronics Engineers (IEEE), 2018, p. 1199-1204Conference paper, Published paper (Refereed)
Abstract [en]

In this paper, we present a novel framework for interactive segmentation of glioblastoma in contrast-enhanced T1-weighted magnetic resonance images. U-net based-fully convolutional network is combined with aninteractive refinement technique. Initial segmentation of brain tumor is performed using U-net, and the result isfurther improved by including complex foreground regions or removing background regions in an iterative manner.The method is evaluated on a research database containing post-operative glioblastoma of 15 patients. Radiologists canrefine initial segmentation results in about 90 seconds, which is well below the time of interactive segmentation fromscratch using state-of-the-art interactive segmentation tools. The experiments revealed that the segmentation results (Dice score) before and after the interaction step (performed byexpert users) are similar. This is most likely due to the limited information in the contrast-enhanced T1-weighted magnetic resonance images used for evaluation. The proposed method is computationally fast and efficient, and could be useful for post-surgical treatment follow-up.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2018
Series
International Conference on Pattern Recognition, ISSN 1051-4651
National Category
Medical Imaging
Research subject
Computerized Image Processing
Identifiers
urn:nbn:se:uu:diva-368290 (URN)10.1109/ICPR.2018.8545105 (DOI)000455146801036 ()2-s2.0-85059739792 (Scopus ID)978-1-5386-3788-3 (ISBN)978-1-5386-3787-6 (ISBN)978-1-5386-3789-0 (ISBN)
Conference
ICPR 2018, August 20–24, Beijing, China
Funder
Swedish Research Council, 2014-6199Vinnova, AIDA 2017-02447
Note

Best paper award

Available from: 2018-12-03 Created: 2018-12-03 Last updated: 2025-02-09Bibliographically approved
Principal InvestigatorStrand, Robin
Coordinating organisation
Uppsala University
Funder
Period
2015-01-01 - 2018-12-31
National Category
Computer ScienceHuman Computer InteractionMedical Image Processing
Identifiers
DiVA, id: project:5361Project, id: 2014-06199_VR