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Title [sv]
Utveckling, optimering och implementering av avancerade teknologier för detektion av dedikerade proteinpaneler och exosomer som biomarkör för prostata- och magcancer.
Title [en]
Development, optimization and Clinical Implementation of Advanced Technologies for Detection of protein panels and Exosomes as Biomarkers–with Relevance for Prostate and Gastric Cancer
Abstract [en]
We have developed a large number of advanced molecular tools for detection and characterization of exosomes and proteins. We aim now to a) develop methods and further optimized assays to characterize and measure exosomes as promising biomarkers for prostate- and gastric cancers, and b) establish a dedicated protein panel for diagnostic of gastric cancer.As previously demonstrated, we have developed a unique set of tools enabling large-scale and multiplex protein measurement and characterization of exosomes, and we have possibility to establish extremely sensitive assays for specific detection of proteins and extracellular vesicles in body fluids, which can offer radically new opportunities for diagnostics, drug development, patient stratification, and follow-up in malignancy and other diseases. We have developed three very sensitive and specific methods for detection of exosomes, and using our technologies we were first to demonstrate elevated levels of a prostate-specific exosome in plasma samples from prostate cancer patients. We plan now to further validate and implement the assays for clinical use.Using sensitive multiplex proximity extension assays we have identified an 18-protein signature, distinguishing gastric cancer patient samples compared to those from controls with a sensitivity of 91% and specificity of 90%. We aim now to establish a dedicated protein panel for diagnosis of gastric cancer after it have been validated in two independent patient cohorts.
Publications (3 of 3) Show all publications
Kanoi, B. N., Waweru, H., Kobia, F. M., Mukala, J., Kirira, P., Mogere, D., . . . Kamali-Moghaddam, M. (2025). Plasma protein biomarkers of Plasmodium falciparum infection in pregnant women: a high-throughput proteomics study. Frontiers in Cellular and Infection Microbiology, 15, Article ID 1594088.
Open this publication in new window or tab >>Plasma protein biomarkers of Plasmodium falciparum infection in pregnant women: a high-throughput proteomics study
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2025 (English)In: Frontiers in Cellular and Infection Microbiology, E-ISSN 2235-2988, Vol. 15, article id 1594088Article in journal (Refereed) Published
Abstract [en]

Introduction: Pregnant women in sub-Saharan Africa face heightened susceptibility to Plasmodium falciparum malaria, with placental sequestration driving adverse outcomes. The infection may lead to pregnancy-associated malaria (PAM) because of the sequestration of Plasmodium falciparum-infected erythrocytes in the placental intervillous space. Although there are several tools for diagnosing malaria infection during pregnancy, including blood smear microscopic examination, rapid diagnostic tests, and PCR, there are no tools for detecting placental infection and, by extension, any dysfunction associated with PAM. Thus, PAM, specifically placental infection, can only be confirmed via postnatal placental histopathology. Therefore, there is an urgent need for specific plasma biomarkers of PAM.

Methods: Here, we used the high throughput proximity extension assay to screen plasma from malaria-exposed pregnant women for differentially expressed proteins that may serve as candidate biomarkers of Plasmodium falciparum infection during pregnancy, with future potential to inform diagnosis of PAM or adverse malaria outcomes. Such biomarkers may also elucidate the pathophysiology of PAM.

Results: Using proximity extension assay (PEA), we identified elevated IgG Fc receptor IIb (FCGR2B) and heme oxygenase-1 (HO-1) in malaria-positive pregnancies, while neurturin (NRTN) and IL-20 were downregulated.

Discussion: IL-20 emerged as a top candidate biomarker, warranting validation in large cohorts with placental histopathology.

Place, publisher, year, edition, pages
Frontiers Media S.A., 2025
Keywords
pregnancy-associated malaria, malaria in pregnancy, biomarkers, Plasmodium falciparum, proteomics, proximity extension assay (PEA)
National Category
Infectious Medicine Gynaecology, Obstetrics and Reproductive Medicine Immunology
Identifiers
urn:nbn:se:uu:diva-564832 (URN)10.3389/fcimb.2025.1594088 (DOI)001533379800001 ()40697816 (PubMedID)2-s2.0-105011361925 (Scopus ID)
Funder
Swedish Research Council, 2020-02258
Available from: 2025-08-13 Created: 2025-08-13 Last updated: 2025-08-13Bibliographically approved
Sinha, T. K., Harinck, G. M., Manouchehri Doulabi, E., Gallini, R., Löf, L., Lindén, S. K., . . . Kamali-Moghaddam, M. (2025). Targeted proteome analysis of extracellular vesicles from gastric cancer cell lines. BMC Methods, 2(1), Article ID 32.
Open this publication in new window or tab >>Targeted proteome analysis of extracellular vesicles from gastric cancer cell lines
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2025 (English)In: BMC Methods, ISSN 3004-8729, Vol. 2, no 1, article id 32Article in journal (Refereed) Published
Abstract [en]

Background

Gastric cancer (GC), the world’s fifth most common malignancy, remains a major cause of death, motivating minimally invasive protein measurements. Small extracellular vesicles (sEVs) mirror cellular state but are difficult to profile from limited material. Proximity extension assay (PEA) enables multiplex, sensitive detection. We developed a PEA-centred workflow to profile GC cell-line sEVs, benchmarked against cells and an EV-rich control, and nominate hypothesis-generating candidates.

Methodss

EVs from four GC cell lines (Kato III, AGS, MKN45, MKN7) were isolated by differential centrifugation/filtration and ultracentrifugation; prostasomes (seminal-fluid EVs; ethics-approved) were purified by ultracentrifugation, Superdex 200 size-exclusion, and sucrose gradient. EVs were characterized by TEM, NTA, and Western blot (CD9/CD63/CD81; Calnexin). Protein profiling used Olink PEA across five Target 96 panels, two commercial (Oncology, Inflammation) and three experimental (Cancer, Cellular Pathways, Neurology) with availability-based selection; single replicate per condition. NPX values were background/LOD-corrected in R, with PCA. STRING PPI used medium confidence (0.4) with FDR-adjusted enrichment. Selected proteins were validated by SP-PLA (qPCR), EV-PLA (flow cytometry), and WB.

Resultss

EVs and prostasomes were purified and characterized per MISEV2023 (TEM/NTA; CD9/CD63/CD81+, calnexin–). Using five Olink PEA panels, 460 proteins were profiled; principal component analysis separated sEVs from parental cells. We identified 71 proteins enriched in GC sEVs, including EphA2, cMet, IL-6, SCF, AXIN1, NOTCH1, and CAV1; 17 were unique to Kato III sEVs. STRING showed a highly connected network, with top pathways: Pathways in cancer, Cytokine–cytokine receptor interaction, and PI3K–Akt. Orthogonal assays (SP-PLA, EV-PLA, WB densitometry) confirmed the presence of EphA2 and cMet on GC sEVs.

Discussions

PEA-based profiling of GC cell-line sEVs nominates 71 enriched proteins (e.g., EphA2, cMet, NOTCH1, CAV1) as hypothesis-generating candidates that may reflect cell-type–specific cargo and tumor–microenvironment signaling. Key limitations include the in-vitro design, single replicates, preselected PEA panels, and the use of prostasomes rather than healthy plasma sEVs, which may affect generalizability and specificity. Translational relevance requires validation in patient biofluids with orthogonal assays and cohort-level evaluation.

Place, publisher, year, edition, pages
Springer Nature, 2025
Keywords
Extracellular vesicles (EVs), Small extracellular vesicles (sEVs), Seminal fluid extracellular vesicles (Prostasome), proteomics, proximity extension assay (PEA)
National Category
Cancer and Oncology
Identifiers
urn:nbn:se:uu:diva-577595 (URN)10.1186/s44330-025-00052-5 (DOI)
Funder
Swedish Research Council, 2020-02258ProstatacancerförbundetSwedish Cancer Society, 22 2166 Pj
Available from: 2026-01-26 Created: 2026-01-26 Last updated: 2026-04-20Bibliographically approved
Palviainen, M., Puutio, J., Halse Østergaard, R., Eble, J. A., Maaninka, K., Butt, U., . . . Siljander, P.-M. R. -. (2024). Beyond basic characterization and omics: Immunomodulatory roles of platelet-derived extracellular vesicles unveiled by functional testing. Journal of Extracellular Vesicles, 13(10), Article ID e12513.
Open this publication in new window or tab >>Beyond basic characterization and omics: Immunomodulatory roles of platelet-derived extracellular vesicles unveiled by functional testing
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2024 (English)In: Journal of Extracellular Vesicles, E-ISSN 2001-3078, Vol. 13, no 10, article id e12513Article in journal (Refereed) Published
Abstract [en]

Renowned for their role in haemostasis and thrombosis, platelets are also increasingly recognized for their contribution in innate immunity, immunothrombosis and inflammatory diseases. Platelets express a wide range of receptors, which allows them to reach a variety of activation endpoints and grants them immunomodulatory functions. Activated platelets release extracellular vesicles (PEVs), whose formation and molecular cargo has been shown to depend on receptor-mediated activation and environmental cues.

This study compared the immunomodulatory profiles of PEVs generated via activation of platelets by different receptors, glycoprotein VI, C-type lectin-like receptor 2 and combining all thrombin-collagen receptors. Functional assays in vivo in zebrafish and in vitro in human macrophages highlighted distinct homing and secretory responses triggered by the PEVs. In contrast, omics analyses of protein and miRNA cargo combined with physicochemical particle characterization found only subtle differences between the activated PEV types, which were insufficient to predict their different immunomodulatory functions. In contrast, constitutively released PEVs, formed in the absence of an exogenous activator, displayed a distinct immunomodulatory profile from the receptor-induced PEVs.

Our findings underscore that PEVs are tunable through receptor-mediated activation. To truly comprehend their role(s) in mediating platelet functions among immune cells, conducting functional assays is imperative.

Place, publisher, year, edition, pages
John Wiley & Sons, 2024
Keywords
extracellular vesicles, functional assays, immunomodulatory, inflammation, innate immunity, macrophages, miRNA, platelets, protein corona
National Category
Hematology
Identifiers
urn:nbn:se:uu:diva-540155 (URN)10.1002/jev2.12513 (DOI)001320348400001 ()39330919 (PubMedID)
Funder
German Research Foundation (DFG), SFB1009Swedish Research Council, 2020-02258Academy of Finland, 287089Academy of Finland, 315227Academy of Finland, 330486Academy of Finland, 332761Novo Nordisk, NNF21OC0067359
Available from: 2024-10-11 Created: 2024-10-11 Last updated: 2024-10-11Bibliographically approved
Principal InvestigatorKamali-Moghaddam, Masood
Coordinating organisation
Uppsala University
Funder
Period
2021-01-01 - 2023-12-31
National Category
Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
DiVA, id: project:6575Project, id: 2020-02258_VR