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Chemical Mapping Exposes the Importance of Active Site Interactions in Governing the Temperature Dependence of Enzyme Turnover
Univ Bath, Dept Biol & Biochem, Bath BA2 7AY, Avon, England..
Univ Bath, Dept Biol & Biochem, Bath BA2 7AY, Avon, England..
Univ Bath, Dept Chem, Bath BA2 7AY, Avon, England..
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - BMC, Biochemistry. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0003-4709-5353
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2021 (English)In: ACS Catalysis, E-ISSN 2155-5435, Vol. 11, no 24, p. 14854-14863Article in journal (Refereed) Published
Abstract [en]

Uncovering the role of global protein dynamics in enzyme turnover is needed to fully understand enzyme catalysis. Recently, we have demonstrated that the heat capacity of catalysis, Delta C-P(double dagger), can reveal links between the protein free energy landscape, global protein dynamics, and enzyme turnover, suggesting that subtle changes in molecular interactions at the active site can affect long-range protein dynamics and link to enzyme temperature activity. Here, we use a model promiscuous enzyme (glucose dehydrogenase from Sulfolobus solfataricus) to chemically map how individual substrate interactions affect the temperature dependence of enzyme activity and the network of motions throughout the protein. Utilizing a combination of kinetics, red edge excitation shift (REES) spectroscopy, and computational simulation, we explore the complex relationship between enzyme-substrate interactions and the global dynamics of the protein. We find that changes in Delta C-P(double dagger) and protein dynamics can be mapped to specific substrate-enzyme interactions. Our study reveals how subtle changes in substrate binding affect global changes in motion and flexibility extending throughout the protein.

Place, publisher, year, edition, pages
American Chemical Society (ACS) American Chemical Society (ACS), 2021. Vol. 11, no 24, p. 14854-14863
Keywords [en]
enzyme, catalysis, protein dynamics, molecular dynamics, temperature dependence, MMRT
National Category
Biochemistry Molecular Biology Biocatalysis and Enzyme Technology
Identifiers
URN: urn:nbn:se:uu:diva-469180DOI: 10.1021/acscatal.1c04679ISI: 000751835200016PubMedID: 34956689OAI: oai:DiVA.org:uu-469180DiVA, id: diva2:1642729
Available from: 2022-03-07 Created: 2022-03-07 Last updated: 2025-02-20Bibliographically approved

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Crean, Rory M.

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