Logo: to the web site of Uppsala University

uu.sePublikasjoner fra Uppsala universitet
Endre søk
RefereraExporteraLink to record
Permanent link

Direct link
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Annet format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annet språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf
Machine Learning in Magnetic Resonance-Guided Adaptive Radiotherapy
Uppsala universitet, Medicinska och farmaceutiska vetenskapsområdet, Medicinska fakulteten, Institutionen för kirurgiska vetenskaper, Radiologi.ORCID-id: 0000-0002-7883-5724
2024 (engelsk)Doktoravhandling, med artikler (Annet vitenskapelig)
Abstract [en]

In radiotherapy, treatments are frequently distributed over multiple weeks, and the radiation dose delivered across several sessions. A significant hurdle in this approach is the anatomical changes that occur between the planning stage and subsequent treatment sessions, leading to uncertainties in the treatment. The MR-Linac system, which combines a linear accelerator with an MRI scanner, addresses this issue by allowing for daily adjustments to the treatment plan based on the patient's current anatomy. However, the process for making these adjustments, involving image fusion, re-contouring, and plan re-optimization, can be quite elaborate and time-consuming. This project aimed to identify opportunities within the daily treatment routine where machine learning and deep learning could streamline the process, thereby enhancing efficiency, with a focus on prostate cancer treatments due to their frequent occurrence at our facility. We leveraged deep learning to train patient-specific models for segmenting anatomical structures in daily MRI scans, matching the accuracy of existing deformable image registration techniques. Furthermore, we extended this concept to segmenting structures and predicting radiation dose distributions, offering a swift assessment of potential dose distribution before engaging in the more complex manual workflow. This could aid in selecting the most suitable adaptation method more quickly. Additionally, we developed motion models for intrafractional motion and for segmenting images at lower resolutions to facilitate a target tracking process. Throughout this project, we showed how machine learning and deep learning techniques could contribute to optimizing the daily MR-Linac workflow.

sted, utgiver, år, opplag, sider
Uppsala: Acta Universitatis Upsaliensis, 2024. , s. 55
Serie
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine, ISSN 1651-6206 ; 2044
HSV kategori
Forskningsprogram
Medicinsk radiofysik
Identifikatorer
URN: urn:nbn:se:uu:diva-526296ISBN: 978-91-513-2114-1 (tryckt)OAI: oai:DiVA.org:uu-526296DiVA, id: diva2:1850183
Disputas
2024-05-31, H:son Holmdahlsalen, Akademiska Sjukhuset, ing 100, Uppsala, 13:00 (engelsk)
Opponent
Veileder
Tilgjengelig fra: 2024-05-06 Laget: 2024-04-09 Sist oppdatert: 2024-05-16
Delarbeid
1. Intrafractional motion models based on principal components in Magnetic Resonance guided prostate radiotherapy
Åpne denne publikasjonen i ny fane eller vindu >>Intrafractional motion models based on principal components in Magnetic Resonance guided prostate radiotherapy
Vise andre…
2021 (engelsk)Inngår i: Physics and Imaging in Radiation Oncology, E-ISSN 2405-6316, Vol. 20, s. 17-22Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Background and purpose:

Devices that combine an MR-scanner with a Linac for radiotherapy, referred to as MR-Linac systems, introduce the possibility to acquire high resolution images prior and during treatment. Hence, there is a possibility to acquire individualised learning sets for motion models for each fraction and the construction of intrafractional motion models. We investigated the feasibility for a principal component analysis (PCA) based, intrafractional motion model of the male pelvic region.

Materials and methods:

4D-scans of nine healthy male volunteers were utilized, FOV covering the entire pelvic region including prostate, bladder and rectum with manual segmentation of each organ at each time frame. Deformable image registration with an optical flow algorithm was performed for each subject with the first time frame as reference. PCA was performed on a subset of the resulting displacement vector fields to construct individualised motion models evaluated on the remaining fields.

Results:

The registration algorithm produced accurate registration result, in general DICE overlap >0.95 across all time frames. Cumulative variance of the eigen values from the PCA showed that 50% or more of the motion is explained in the first component for all subjects. However, the size and direction for the components differed between subjects. Adding more than two components did not improve the accuracy significantly and the model was able to explain motion down to about 1 mm.ConclusionsAn individualised intrafractional male pelvic motion model is feasible. Geometric accuracy was about 1 mm based on 1–2 principal components.

sted, utgiver, år, opplag, sider
Elsevier, 2021
Emneord
Radiology Nuclear Medicine and imaging, Radiation
HSV kategori
Identifikatorer
urn:nbn:se:uu:diva-459335 (URN)10.1016/j.phro.2021.09.004 (DOI)000730754800004 ()34660917 (PubMedID)
Tilgjengelig fra: 2021-11-22 Laget: 2021-11-22 Sist oppdatert: 2024-05-16bibliografisk kontrollert
2. Patient specific deep learning based segmentation for magnetic resonance guided prostate radiotherapy
Åpne denne publikasjonen i ny fane eller vindu >>Patient specific deep learning based segmentation for magnetic resonance guided prostate radiotherapy
2022 (engelsk)Inngår i: Physics and Imaging in Radiation Oncology, E-ISSN 2405-6316, Vol. 23, s. 38-42Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

Background and Purpose: Treatments on combined Magnetic Resonance (MR) scanners and Linear Accelerators (Linacs) for radiotherapy, called MR-Linacs, often require daily contouring. Currently, deformable image registration (DIR) algorithms propagate contours from reference scans, however large shape and size changes can be troublesome. Artificial neural network (ANN) based contouring may alleviate this issue, however generally requires large datasets for training. Mitigating the problem of scarcity of data, we propose patient specific networks trained on a single dataset for each patient, for contouring onto the following datasets in an adaptive MR-Linacworkflow. Materials and Methods: MR-scans from 17 prostate patients treated on an MR-Linac with contours of Clinical Target Volume (CTV), bladder and rectum were utilized. U-net shaped models were trained based on the image from the first fraction of each patient, and subsequently applied onto the following treatment images. Results were compared with manual contours in terms of the Dice coefficient and Added Path Length (APL). As benchmark, contours propagated through the clinical DIR algorithm were similarly evaluated. Results: In Dice coefficient the ANN output was 0.92 +/- 0.03, 0.93 +/- 0.07 and 0.84 +/- 0.10 while for DIR 0.95 +/- 0.03, 0.93 +/- 0.08, 0.88 +/- 0.06 for CTV, bladder and rectum respectively. Similarly, APL where 3109 +/- 1642, 7250 +/- 4234 and 5041 +/- 2666 for ANN and 1835 +/- 1621, 7236 +/- 4287 and 4170 +/- 2920 voxels for DIR. Conclusions: Patient specific ANN models trained on images from the first fraction of a prostate MR-Linac treatment showed similar accuracy when applied to the subsequent fraction images as a clinically implemented DIR method.

sted, utgiver, år, opplag, sider
Elsevier, 2022
HSV kategori
Forskningsprogram
Datoriserad bildbehandling
Identifikatorer
urn:nbn:se:uu:diva-482662 (URN)10.1016/j.phro.2022.06.001 (DOI)000836498300006 ()35769110 (PubMedID)
Tilgjengelig fra: 2022-09-22 Laget: 2022-09-22 Sist oppdatert: 2024-04-09bibliografisk kontrollert
3. Deep learning segmentation of low-resolution images for prostate magnetic resonance-guided radiotherpy
Åpne denne publikasjonen i ny fane eller vindu >>Deep learning segmentation of low-resolution images for prostate magnetic resonance-guided radiotherpy
2024 (engelsk)Manuskript (preprint) (Annet vitenskapelig)
HSV kategori
Forskningsprogram
Medicinsk radiofysik
Identifikatorer
urn:nbn:se:uu:diva-525686 (URN)
Tilgjengelig fra: 2024-04-08 Laget: 2024-04-08 Sist oppdatert: 2024-04-09
4. Deep learning-based dose prediction for magnetic resonance-guided prostate radiotherapy
Åpne denne publikasjonen i ny fane eller vindu >>Deep learning-based dose prediction for magnetic resonance-guided prostate radiotherapy
2024 (engelsk)Inngår i: Medical physics (Lancaster), ISSN 0094-2405, Vol. 51, nr 11, s. 8087-8095Artikkel i tidsskrift (Fagfellevurdert) Published
Abstract [en]

  Background

Daily adaptive radiotherapy, as performed with the Elekta Unity MR-Linac, requires choosing between different adaptation methods, namely ATP (Adapt to Position) and ATS (Adapt to Shape), where the latter requires daily re-contouring to obtain a dose plan tailored to the daily anatomy. These steps are inherently resource-intensive, and quickly predicting the dose distribution and the dosimetric evaluation criteria while the patient is on the table could facilitate a fast selection of adaptation method and decrease the treatment times.

Purpose

In this work, we aimed to develop a deep-learning-based dose-prediction pipeline for prostate MR-Linac treatments.

Methods

Two hundred twelve MR-images, structure sets, and dose distributions from 35 prostate patients treated with 6.1 Gy for 7 or 6 fractions at our MR-Linac were included, split into train/test partitions of 152/60 images, respectively. A deep-learning segmentation network was trained to segment the CTV (prostate), bladder, and rectum. A second network was trained to predict the dose distribution based on manually delineated structures. At inference, the predicted segmentations acted as input to the dose prediction network, and the predicted dose was compared to the true (optimized in the treatment planning system) dose distribution.

Results

Median DSC values from the segmentation network were 0.90/0.94/0.87 for CTV/bladder/rectum. Predicted segmentations as input to the dose prediction resulted in mean differences between predicted and true doses of 0.7%/0.7%/1.7% (relative to the prescription dose) for D98%/D95%/D2% for the CTV. For the bladder, the difference was 0.7%/0.3% for Dmean/D2% and for the rectum 0.1/0.2/0.2 pp (percentage points) for V33Gy/V38Gy/V41Gy. In comparison, true segmentations as input resulted in differences of 1.1%/0.9%/1.6% for CTV, 0.5%/0.4% for bladder, and 0.7/0.4/0.3 pp for the rectum. Only D2% for CTV and Dmean/D2% for bladder were found to be statistically significantly better when using true structures instead of predicted structures as input to the dose prediction.

Conclusions

Small differences in the fulfillment of clinical dose-volume constraints are seen between utilizing deep-learning predicted structures as input to a dose prediction network and manual structures. Overall mean differences <2% indicate that the dose-prediction pipeline is useful as a decision support tool where differences are >2%.

sted, utgiver, år, opplag, sider
John Wiley & Sons, 2024
HSV kategori
Identifikatorer
urn:nbn:se:uu:diva-526295 (URN)10.1002/mp.17312 (DOI)001284950100001 ()39106418 (PubMedID)2-s2.0-85200513578 (Scopus ID)
Tilgjengelig fra: 2024-04-08 Laget: 2024-04-08 Sist oppdatert: 2025-01-13bibliografisk kontrollert

Open Access i DiVA

UUThesis_S-Fransson-2024(1143 kB)405 nedlastinger
Filinformasjon
Fil FULLTEXT01.pdfFilstørrelse 1143 kBChecksum SHA-512
b1963b86cefc31207843d5e44a39f02f6082f98ddb47f3ee0f987e70fd71822a69d1b11befdbea22ae37c829124ae6b7f0b6614fdd7a47cc1fade87a3022c641
Type fulltextMimetype application/pdf

Person

Fransson, Samuel

Søk i DiVA

Av forfatter/redaktør
Fransson, Samuel
Av organisasjonen

Søk utenfor DiVA

GoogleGoogle Scholar
Totalt: 406 nedlastinger
Antall nedlastinger er summen av alle nedlastinger av alle fulltekster. Det kan for eksempel være tidligere versjoner som er ikke lenger tilgjengelige

isbn
urn-nbn

Altmetric

isbn
urn-nbn
Totalt: 1218 treff
RefereraExporteraLink to record
Permanent link

Direct link
Referera
Referensformat
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Annet format
Fler format
Språk
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Annet språk
Fler språk
Utmatningsformat
  • html
  • text
  • asciidoc
  • rtf