In situ genotyping of a pooled strain library after characterizing complex phenotypesVisa övriga samt affilieringar
2017 (Engelska)Ingår i: Molecular Systems Biology, ISSN 1744-4292, E-ISSN 1744-4292, Vol. 13, nr 10, artikel-id 947
Artikel i tidskrift (Refereegranskat) Published
Abstract [en]
In this work, we present a proof-of-principle experiment that extends advanced live cell microscopy to the scale of pool-generated strain libraries. We achieve this by identifying the genotypes for individual cells in situ after a detailed characterization of the phenotype. The principle is demonstrated by single-molecule fluorescence time-lapse imaging of Escherichia coli strains harboring barcoded plasmids that express a sgRNA which suppresses different genes in the E.coli genome through dCas9 interference. In general, the method solves the problem of characterizing complex dynamic phenotypes for diverse genetic libraries of cell strains. For example, it allows screens of how changes in regulatory or coding sequences impact the temporal expression, location, or function of a gene product, or how the altered expression of a set of genes impacts the intracellular dynamics of a labeled reporter.
Ort, förlag, år, upplaga, sidor
2017. Vol. 13, nr 10, artikel-id 947
Nyckelord [en]
DuMPLING, live cell, microfluidic, single cell, strain libraries
Nationell ämneskategori
Biokemi Molekylärbiologi
Identifikatorer
URN: urn:nbn:se:uu:diva-342924DOI: 10.15252/msb.20177951ISI: 000416160000004PubMedID: 29042431OAI: oai:DiVA.org:uu-342924DiVA, id: diva2:1185625
Forskningsfinansiär
Knut och Alice Wallenbergs StiftelseVetenskapsrådetEU, Europeiska forskningsrådet2018-02-262018-02-262026-02-05Bibliografiskt granskad
Ingår i avhandling