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Interactive segmentation of glioblastoma for post-surgical treatment follow-up
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division of Visual Information and Interaction. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Computerized Image Analysis and Human-Computer Interaction.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology.ORCID iD: 0000-0002-2502-6026
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Radiology.ORCID iD: 0000-0002-9481-6857
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2018 (English)In: 2018 24th International Conference on Pattern Recognition (ICPR), Institute of Electrical and Electronics Engineers (IEEE), 2018, p. 1199-1204Conference paper, Published paper (Refereed)
Abstract [en]

In this paper, we present a novel framework for interactive segmentation of glioblastoma in contrast-enhanced T1-weighted magnetic resonance images. U-net based-fully convolutional network is combined with aninteractive refinement technique. Initial segmentation of brain tumor is performed using U-net, and the result isfurther improved by including complex foreground regions or removing background regions in an iterative manner.The method is evaluated on a research database containing post-operative glioblastoma of 15 patients. Radiologists canrefine initial segmentation results in about 90 seconds, which is well below the time of interactive segmentation fromscratch using state-of-the-art interactive segmentation tools. The experiments revealed that the segmentation results (Dice score) before and after the interaction step (performed byexpert users) are similar. This is most likely due to the limited information in the contrast-enhanced T1-weighted magnetic resonance images used for evaluation. The proposed method is computationally fast and efficient, and could be useful for post-surgical treatment follow-up.

Place, publisher, year, edition, pages
Institute of Electrical and Electronics Engineers (IEEE), 2018. p. 1199-1204
Series
International Conference on Pattern Recognition, ISSN 1051-4651
National Category
Medical Imaging
Research subject
Computerized Image Processing
Identifiers
URN: urn:nbn:se:uu:diva-368290DOI: 10.1109/ICPR.2018.8545105ISI: 000455146801036Scopus ID: 2-s2.0-85059739792ISBN: 978-1-5386-3788-3 (electronic)ISBN: 978-1-5386-3787-6 (electronic)ISBN: 978-1-5386-3789-0 (print)OAI: oai:DiVA.org:uu-368290DiVA, id: diva2:1267737
Conference
ICPR 2018, August 20–24, Beijing, China
Part of project
Subtle Change Detection and Quantification in Magnetic Resonance Neuroimaging, Swedish Research Council
Funder
Swedish Research Council, 2014-6199Vinnova, AIDA 2017-02447
Note

Best paper award

Available from: 2018-12-03 Created: 2018-12-03 Last updated: 2025-02-09Bibliographically approved

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Dhara, Ashis KumarFahlström, MarkusWikström, JohanLarsson, Elna-MarieStrand, Robin

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