Logo: to the web site of Uppsala University

uu.sePublications from Uppsala University
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Accurate detection of Newcastle disease virus using proximity-dependent DNA aptamer ligation assays
Univ Tunis El Manar, Inst Pasteur Tunis, Lab Epidemiol & Vet Microbiol, 13 Pl Pasteur, Tunis 1002, Tunisia..ORCID iD: 0000-0002-2782-6502
Univ Tunis El Manar, Inst Pasteur Tunis, Lab Epidemiol & Vet Microbiol, 13 Pl Pasteur, Tunis 1002, Tunisia..
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Immunology, Genetics and Pathology, Molecular tools. Uppsala University, Science for Life Laboratory, SciLifeLab. Univ Pittsburgh, Dept Obstet Gynecol & Reprod Sci, Med Sch, Pittsburgh, PA USA..
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Immunology, Genetics and Pathology. Uppsala University, Science for Life Laboratory, SciLifeLab.ORCID iD: 0000-0001-6074-7462
Show others and affiliations
2021 (English)In: FEBS Open Bio, E-ISSN 2211-5463, Vol. 11, no 4, p. 1122-1131Article in journal (Refereed) Published
Abstract [en]

Detecting viral antigens at low concentrations in field samples can be crucial for early veterinary diagnostics. Proximity ligation assays (PLAs) in both solution and solid-phase formats are widely used for high-performance protein detection in medical research. However, the affinity reagents used, which are mainly poly- and monoclonal antibodies, play an important role in the performance of PLAs. Here, we have established the first homogeneous and solid-phase proximity-dependent DNA aptamer ligation assays for rapid and accurate detection of Newcastle disease virus (NDV). NDV is detected by a pair of extended DNA aptamers that, upon binding in proximity to proteins on the envelope of the virus, are joined by enzymatic ligation to form a unique amplicon that can be sensitively detected using real-time PCR. The sensitivity, specificity, and reproducibility of the assays were validated using 40 farm samples. The results demonstrated that the developed homogeneous and solid-phase PLAs, which use NDV-selective DNA aptamers, are more sensitive than the sandwich enzymatic-linked aptamer assay (ELAA), and have a comparable sensitivity to real-time reverse transcription PCR (rRT-PCR) as the gold standard detection method. In addition, the solid-phase PLA was shown to have a greater dynamic range with improved lower limit of detection, upper- and lower limit of quantification, and minimal detectable dose as compared with those of ELAA and rRT-PCR. The specificity of PLA is shown to be concordant with rRT-PCR.

Place, publisher, year, edition, pages
Wiley John Wiley & Sons, 2021. Vol. 11, no 4, p. 1122-1131
Keywords [en]
aptamers, Newcastle disease virus, proximity ligation assays, rRT‐, PCR, sandwich ELAA
National Category
Biochemistry Molecular Biology Medical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Identifiers
URN: urn:nbn:se:uu:diva-445477DOI: 10.1002/2211-5463.13117ISI: 000627476800001PubMedID: 33595202OAI: oai:DiVA.org:uu-445477DiVA, id: diva2:1565791
Funder
Swedish Research Council, 2020-02258Available from: 2021-06-14 Created: 2021-06-14 Last updated: 2025-02-20Bibliographically approved

Open Access in DiVA

fulltext(315 kB)379 downloads
File information
File name FULLTEXT01.pdfFile size 315 kBChecksum SHA-512
213d9844202b5c6fedefc9a3ad2e4bb1002baa8d34e2ef1c6fbb0bfc81ed78c7c5baa0adfed9c36d56bdbc395fb556961e681ada44b6d2efd089e0e1572b19d6
Type fulltextMimetype application/pdf

Other links

Publisher's full textPubMed

Authority records

Ebai, Tongede Oliveira, Felipe Marques SouzaKamali-Moghaddam, Masood

Search in DiVA

By author/editor
Marnissi, BoutheinaEbai, Tongede Oliveira, Felipe Marques SouzaKamali-Moghaddam, Masood
By organisation
Molecular toolsScience for Life Laboratory, SciLifeLabDepartment of Immunology, Genetics and Pathology
In the same journal
FEBS Open Bio
BiochemistryMolecular BiologyMedical Biotechnology (with a focus on Cell Biology (including Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)

Search outside of DiVA

GoogleGoogle Scholar
Total: 380 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

doi
pubmed
urn-nbn

Altmetric score

doi
pubmed
urn-nbn
Total: 153 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf