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Machine learning inference of molecular dipole moment in liquid water
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry.
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry. (Structural Chemistry)ORCID iD: 0000-0002-7167-0840
2021 (English)In: Machine Learning: Science and Technology, E-ISSN 2632-2153, Vol. 2, no 3, article id 03LT03Article in journal (Refereed) Published
Abstract [en]

Molecular dipole moment in liquid water is an intriguing property, partly due to the fact that there is no unique way to partition the total electron density into individual molecular contributions. The prevailing method to circumvent this problem is to use maximally localized Wannier functions, which perform a unitary transformation of the occupied molecular orbitals by minimizing the spread function of Boys. Here we revisit this problem using a data-driven approach satisfying two physical constraints, namely: (a) The displacement of the atomic charges is proportional to the Berry phase polarization; (b) Each water molecule has a formal charge of zero. It turns out that the distribution of molecular dipole moments in liquid water inferred from latent variables is surprisingly similar to that obtained from maximally localized Wannier functions. Apart from putting a maximum-likelihood footnote to the established method, this work highlights the capability of graph convolution based charge models and the importance of physical constraints on improving the model interpretability.

Place, publisher, year, edition, pages
2021. Vol. 2, no 3, article id 03LT03
National Category
Theoretical Chemistry Physical Chemistry Materials Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-464076DOI: 10.1088/2632-2153/ac0123OAI: oai:DiVA.org:uu-464076DiVA, id: diva2:1627220
Funder
EU, Horizon 2020, 949012Available from: 2022-01-13 Created: 2022-01-13 Last updated: 2024-12-09Bibliographically approved
In thesis
1. Dipole and Charge Prediction for Electrochemical Systems from Atomistic Machine Learning
Open this publication in new window or tab >>Dipole and Charge Prediction for Electrochemical Systems from Atomistic Machine Learning
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Due to the increasing demand for energy, sustainable energy generation and storage are becoming more and more important in society and research. Electrochemical energy storage devices such as electrochemical double-layer capacitors (EDLCs) play an important role in fulfilling this need. To understand, control and design EDLCs at atomic precision, physical insights from atomistic simulation are clearly needed. However, atomistic simulation of EDLCs faces challenges such as the large system size and the complex chemistry involved at electrified solid-liquid interfaces. To address these challenges, machine learning models for charge prediction have been developed to aid the atomistic simulations of EDLCs in this thesis. Here, a divide-and-conquer approach was taken, and the electrolyte and electrode component were investigated separately.

Initially, a neural network approach called PiNet-dipole was developed to model the supercell polarization in liquid water using two constraints. First, the displacement of the atomic charges is proportional to the itinerant polarization. Second, each water molecule has a net charge of zero. In doing so, a molecular dipole moment distribution can be inferred for liquid water that is surprisingly similar to that computed from Wannier centers. More importantly, PiNet-dipole provides a way to predict atomic charge without resorting to any predefined charge partition schemes. This is followed by using a class of machine learning models called PiNet-chi to predict the response charge as the result of an applied electric field for both organic electrolyte molecules and graphene analogues. Both of these models were then upgraded through the addition of equivariant features in PiNet2. This opened up new ways of predicting dipole moment for both small molecules and condensed phase systems, allowing expansion to the PiNet2-dipole family and enabling a more expressive atomic charge prediction model.

Finally, by combining the PiNet(2)-dipole and the PiNet(2)-chi models and integrating them with the semi-classical molecular dynamics code MetalWalls, the PiNNwall interface was developed to model polarizable and heterogeneous electrodes. PiNNwall was then used to study chemically doped graphene and graphene oxide under different electrical boundary conditions, as well as to investigate the influence of the proton charge on aqueous EDLCs.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. p. 70
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2484
Keywords
electrochemical energy storage, double-layer capacitor, charge response kernel, molecular dipole moment, atomic charge, machine learning, atomistic simulation
National Category
Materials Chemistry
Research subject
Chemistry with specialization in Materials Chemistry
Identifiers
urn:nbn:se:uu:diva-544810 (URN)978-91-513-2334-3 (ISBN)
Public defence
2025-02-11, Å101121, Sonja-Lyttkens, Ångströmlaboratoriet, Lägerhyddsvägen 1, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2025-01-10 Created: 2024-12-09 Last updated: 2025-01-16Bibliographically approved

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Knijff, LisanneZhang, Chao

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