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Hydrolytic and Oxidative Mechanisms Involved in Cellulose Degradation
Uppsala University, Teknisk-naturvetenskapliga vetenskapsområdet, Chemistry, Department of Biochemistry.
2006 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The enzymatic degradation of cellulose is an important process in nature. This thesis has focused on the degradation of cellulose by enzymes from two cellulose-degrading fungi, Hypocrea jecorina and Phanerochaete chrysosporium, including both the action of the individual enzymes and their synergistic interplay.

The end-preference of cellobiohydrolases on crystalline cellulose was studied. Cellobiohydrolases belonging to glycosyl hydrolase (GH) family 7 were found to hydrolyse cellulose processively, starting from the reducing end of the cellulose chain. End-labelled cellulose can serve as a tool for functional classification of cellulases.

The synergy mechanism between endoglucanases and cellobiohydrolases was studied using substrates with different physical properties derived from bacterial cellulose. A new mechanism for synergism between endo- and exoacting enzymes was proposed whereby endoglucanases, in addition to creating nicks in amorphous parts of cellulose, thereby making new starting-points for processively acting cellobiohydrolases, also “polish” the cellulose surface by removing shorter chains from cellulose surface.

A new small endoglucanase belonging to the GH12 family was isolated and characterised. The proposed role of this enzyme is to make the cellulose in wood more accessible to other cellulases.

Oxygen conversion by cellobiose dehydrogenase was studied. Hydrogen peroxide produced by cellobiose dehydrogenase can be decomposed even by traces of certain metal ions into a hydroxyl radical and a hydroxyl ion. As an example, reduced metal ions will be continuously regenerated by cellobiose dehydrogenase, which thus stimulates the degradation.

Interactions between GH7 family cellobiohydrolases and o-nitrophenyl cellobioside were studied by fluorescence spectroscopy and kinetic tests. o-nitrophenyl cellobioside was used as indicator ligand to determine the dissociation constants for cellobiose binding to catalytically inactive Cel7A mutants by displacement binding experiments.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis , 2006. , p. 51
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 185
Keywords [en]
Biochemistry, cellobiohydrolase, cellulase, cellulose, cellobiose dehydrogenase, endoglucanase, kinetics, synergism, competitive binding
Keywords [sv]
Biokemi
Identifiers
URN: urn:nbn:se:uu:diva-6888ISBN: 91-554-6571-4 (print)OAI: oai:DiVA.org:uu-6888DiVA, id: diva2:168387
Public defence
2006-05-31, Room B41, BMC, Husargatan 3, Uppsala, 10:15
Opponent
Supervisors
Available from: 2006-05-09 Created: 2006-05-09Bibliographically approved
List of papers
1. Progress curves - A mean for functional classification of cellulases
Open this publication in new window or tab >>Progress curves - A mean for functional classification of cellulases
1998 In: European Journal of Biochemistry, ISSN 0014-2956, Vol. 258, no 1, p. 200-206Article in journal (Refereed) Published
Identifiers
urn:nbn:se:uu:diva-94510 (URN)
Available from: 2006-05-09 Created: 2006-05-09 Last updated: 2011-02-15
2. Acid hydrolysis of bacterial cellulose reveals different modes of synergistic action between cellobiohydrolase I and endoglucanase I
Open this publication in new window or tab >>Acid hydrolysis of bacterial cellulose reveals different modes of synergistic action between cellobiohydrolase I and endoglucanase I
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1999 (English)In: European Journal of Biochemistry, ISSN 0014-2956, E-ISSN 1432-1033, Vol. 266, no 2, p. 327-334Article in journal (Refereed) Published
Abstract [en]

Intact and partially acid hydrolyzed cellulose from Acetobacter xylinum were used as model substrates for cellulose hydrolysis by 1,4-β-d-glucan-cellobiohydrolase I (CBH I) and 1,4-β-d-endoglucanase I (EG I) from Trichoderma reesei. A high synergy between CBH I and EG I in simultaneous action was observed with intact bacterial cellulose (BC), but this synergistic effect was rapidly reduced by acid pretreatment of the cellulose. Moreover, a distinct synergistic effect was observed upon sequential endo–exo action on BC, but not on bacterial microcrystalline cellulose (BMCC). A mechanism for endo–exo synergism on crystalline cellulose is proposed where the simultaneous action of the enzymes counteract the decrease of activity caused by undesirable changes in the cellulose surface microstructure.

Keywords
cellulase, cellulose, hydrolysis, synergism, simulation
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-94511 (URN)10.1046/j.1432-1327.1999.00853.x (DOI)000084444000002 ()
Available from: 2006-05-09 Created: 2006-05-09 Last updated: 2025-02-20Bibliographically approved
3. Endoglucanase 28 (Cel12A), a new Phanerochaete chrysosporium cellulase.
Open this publication in new window or tab >>Endoglucanase 28 (Cel12A), a new Phanerochaete chrysosporium cellulase.
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1999 (English)In: European Journal of Biochemistry, ISSN 0014-2956, E-ISSN 1432-1033, Vol. 259, no 1-2, p. 88-95Article in journal (Refereed) Published
Abstract [en]

A 28-kDa endoglucanase was isolated from the culture filtrate of Phanerochaete chrysosporium strain K3 and named EG 28. It degrades carboxymethylated cellulose and amorphous cellulose, and to a lesser degree xylan and mannan but not microcrystalline cellulose (Avicel). EG 28 is unusual among cellulases from aerobic fungi, in that it appears to lack a cellulose-binding domain and does not bind to crystalline cellulose. The enzyme is efficient at releasing short fibres from filter paper and mechanical pulp, and acts synergistically with cellobiohydrolases. Its mode of degrading filter paper appears to be different to that of endoglucanase I from Trichoderma reesei. Furthermore, EG 28 releases colour from stained cellulose beads faster than any other enzyme tested. Peptide mapping suggests that it is not a fragment of another known endoglucanases from P. chrysosporium and peptide sequences indicate that it belongs to family 12 of the glycosyl hydrolases. EG 28 is glycosylated. The biological function of the enzyme is discussed, and it is hypothesized that it is homologous to EG III in Trichoderma reesei and the role of the enzyme is to make the cellulose in wood more accessible to other cellulases.

Keywords
Cellulase, cellulose, endoglucanase, P-chrysosporium, white rot fungus
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-94512 (URN)000077944300011 ()
Available from: 2006-05-09 Created: 2006-05-09 Last updated: 2025-02-20
4. Conversion of O2 species by cellobiosedehydrogenase (cellobiose oxidase) and glucose oxidase — a comparison
Open this publication in new window or tab >>Conversion of O2 species by cellobiosedehydrogenase (cellobiose oxidase) and glucose oxidase — a comparison
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1997 (English)In: Biotechnology letters, ISSN 0141-5492, E-ISSN 1573-6776, Vol. 19, no 4, p. 379-384Article in journal (Refereed) Published
Abstract [en]

Cellobiose dehydrogenase from Phanerochaete chrysosporium produces H2O2 by electron transfer between cellobiose and O-2 with a lower yield than the 1:1:1 molar ratio displayed by Aspergillus niger. glucose oxidase in the similar reaction between glucose and O-2. The discrepancy could best be explained if both a Fenton's reaction and the spontaneous reactivity of the oxygen species formed were taken into account.

National Category
Natural Sciences
Identifiers
urn:nbn:se:uu:diva-94513 (URN)10.1023/A:1018315320696 (DOI)A1997WT29700017 ()
Available from: 2006-05-09 Created: 2006-05-09 Last updated: 2017-12-14Bibliographically approved
5. o-nitrophenyl cellobioside as an active site probe for family 7 cellobiohydrolases
Open this publication in new window or tab >>o-nitrophenyl cellobioside as an active site probe for family 7 cellobiohydrolases
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Manuscript (Other academic)
Identifiers
urn:nbn:se:uu:diva-94514 (URN)
Available from: 2006-05-09 Created: 2006-05-09 Last updated: 2011-02-17

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