Logo: to the web site of Uppsala University

uu.sePublications from Uppsala University
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Tripeptidyl-Peptidase II: Structure, Function and Gene Regulation
Uppsala University, Teknisk-naturvetenskapliga vetenskapsområdet, Chemistry, Department of Biochemistry.
2006 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The protein degradation process is of vital importance for the cell to maintain cellular functions. An important enzyme in this process is the multimeric tripeptidyl-peptidase II (TPP II). It removes tripeptides from a free N-terminus of the substrates. TPP II has broad substrate specificity and wide-spread distribution, suggesting that the TPP II gene is a house-keeping gene. However, the levels of both mRNA and TPP II protein varies during different conditions and the TPP II gene promoter was therefore identified and characterized. It is a 215 bp fragment just upstream of the coding sequence. This fragment lacks a TATA-box but contains an initiator, two inverted CCAAT-boxes and an E-box. The CCAAT-boxes and the E-box were found to bind the nuclear factor Y (NF-Y) and upstream stimulatory factor-1 (USF-1) respectively. The CCAAT-boxes appear to be most important for the transcriptional activation. Furthermore, several silencer element were identified further upstream of the 215 bp promoter and the octamer binding factor Oct-1 was found to bind one of these fragments. If Oct-1 is responsible for the inhibition of the transcription of the TPP II gene remains to be investigated. In addition, the substrate specificity was investigated. For this purpose an expression system using Pichia pastoris was developed. The purified recombinant TPP II was found to have the same enzymatic properties as the native enzyme. In order to identify the amino acids involved in the binding of the N-terminus of the substrate, wild-type murine TPP II and four mutants E305Q, E305K, E331Q and E331K were purified. Steady-state kinetic analysis clearly demonstrated that both Glu-305 and Glu-331 are important for this binding as the KMapp is more than 102 higher for the mutants than wild-type. Finally, the pH-dependence for cleavage of two chromogenic substrates was compared for TPP II from different species.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis , 2006. , p. 52
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 243
Keywords [en]
Biochemistry, gene regulation, protein expression, enzyme kinetics, tripeptidyl-peptidase II, proteasome, intracellular protein degradation, exopeptidase
Keywords [sv]
Biokemi
Identifiers
URN: urn:nbn:se:uu:diva-7345ISBN: 91-554-6733-4 (print)OAI: oai:DiVA.org:uu-7345DiVA, id: diva2:169312
Public defence
2006-12-15, B7:113a, BMC, Husargatan 3, Uppsala, 09:15
Opponent
Supervisors
Available from: 2006-11-24 Created: 2006-11-24Bibliographically approved
List of papers
1. Identification and characterization of the promoter for the gene encoding human tripeptidyl-peptidase II
Open this publication in new window or tab >>Identification and characterization of the promoter for the gene encoding human tripeptidyl-peptidase II
2005 In: Gene, Vol. 345, p. 249-257Article in journal (Refereed) Published
Identifiers
urn:nbn:se:uu:diva-95189 (URN)
Available from: 2006-11-24 Created: 2006-11-24Bibliographically approved
2. Characterization of the promoter of the gene encoding human tripeptidyl-peptidase II and identification of upstream silencer elements
Open this publication in new window or tab >>Characterization of the promoter of the gene encoding human tripeptidyl-peptidase II and identification of upstream silencer elements
2007 (English)In: Gene, ISSN 0378-1119, E-ISSN 1879-0038, Vol. 393, no 1-2, p. 62-69Article in journal (Refereed) Published
Abstract [en]

Tripeptidyl-peptidase II (TPP II) is one of the many proteases involved in the important process of intracellular proteolysis. The widespread distribution and broad substrate specificity suggest that TPP II is encoded by a "house-keeping gene". However, both TPP II protein and mRNA levels vary in different cells. To investigate whether these variations are due to regulation on a genetic level, the promoter of the TPP2 gene has previously been identified. The promoter contains two inverted CCAAT-boxes and an E-box. By means of reporter assays and electrophoretic mobility shift assays the promoter has now been further characterized. It could be concluded that USF-1 (upstream stimulatory factor-1) binds to the E-box in the promoter. The transcription factors NF-Y and USF-1 are present in protein-DNA complexes of different sizes. Mutation of the E-box had no effect, indicating that only binding of NF-Y to the two CCAAT-boxes was important for activation of transcription. However, this does not exclude the possibility that USF-1 can play an important role in transcription in other types of cells. Furthermore, the region upstream of the promoter was investigated due to its ability to inhibit transcription. Several silencer elements were identified and we also showed that Oct-1 binds to one of these elements. Thus, this investigation reveals that TPP II expression could be regulated through both positive and negative regulatory elements. Further studies are required to establish the involvement of different genetic elements, and how the interplay between different transcription factors will affect the transcriptional rate in vivo.

Keywords
transcriptional regulation, NF-Y, USF-1, Oct-1, EMSA, pGL3
National Category
Medical and Health Sciences
Identifiers
urn:nbn:se:uu:diva-95190 (URN)10.1016/j.gene.2007.01.015 (DOI)000246407700007 ()17343995 (PubMedID)
Available from: 2006-11-24 Created: 2006-11-24 Last updated: 2017-12-14Bibliographically approved
3. Glu-305 and Glu-331 are involved in substrate binding of tripeptidyl-peptidase II
Open this publication in new window or tab >>Glu-305 and Glu-331 are involved in substrate binding of tripeptidyl-peptidase II
Manuscript (Other academic)
Identifiers
urn:nbn:se:uu:diva-95191 (URN)
Available from: 2006-11-24 Created: 2006-11-24 Last updated: 2010-01-13Bibliographically approved
4. Kinetic characterization of recombinant murine tripeptidyl-peptidase II purified from Pichia pastoris: a comparison with the enzyme from human and Drosophila melanogaster
Open this publication in new window or tab >>Kinetic characterization of recombinant murine tripeptidyl-peptidase II purified from Pichia pastoris: a comparison with the enzyme from human and Drosophila melanogaster
Manuscript (Other academic)
Identifiers
urn:nbn:se:uu:diva-95192 (URN)
Available from: 2006-11-24 Created: 2006-11-24 Last updated: 2010-01-13Bibliographically approved

Open Access in DiVA

fulltext(739 kB)789 downloads
File information
File name FULLTEXT01.pdfFile size 739 kBChecksum MD5
e91c5b2ba42806c3725c2a4c2b1f819a637f43cf1ffa17afa5ce4039066053d60f784f6f
Type fulltextMimetype application/pdf
cover(5404 kB)175 downloads
File information
File name COVER01.pdfFile size 5404 kBChecksum MD5
0a13e369bd21f317637c2f1ffaae428f908e7cac88c948005e0150ceb0f619422aadeef1
Type coverMimetype application/pdf

By organisation
Department of Biochemistry

Search outside of DiVA

GoogleGoogle Scholar
Total: 789 downloads
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

isbn
urn-nbn

Altmetric score

isbn
urn-nbn
Total: 1312 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf