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Discovery and Hit-to-Lead Optimization of Benzothiazole Scaffold- Based DNA Gyrase Inhibitors with Potent Activity against Acinetobacter baumannii and Pseudomonas aeruginosa
Univ Ljubljana, Fac Pharm, Ljubljana 1000, Slovenia..ORCID iD: 0000-0003-2528-396X
Univ Ljubljana, Fac Pharm, Ljubljana 1000, Slovenia..
Univ Ljubljana, Fac Pharm, Ljubljana 1000, Slovenia.;Univ Perugia, Dept Pharmaceut Sci, Via Liceo 1, I-06100 Perugia, Italy..
Univ Ljubljana, Fac Pharm, Ljubljana 1000, Slovenia.;Univ Cagliari, Dept Life & Environm Sci, Drug Sect, Via Osped 72, I-09124 Cagliari, Italy..
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2023 (English)In: Journal of Medicinal Chemistry, ISSN 0022-2623, E-ISSN 1520-4804, Vol. 66, no 2, p. 1380-1425Article in journal (Refereed) Published
Abstract [en]

We have developed compounds with a promising activity against Acinetobacter baumannii and Pseudomonas aerugi-nosa, which are both on the WHO priority list of antibiotic -resistant bacteria. Starting from DNA gyrase inhibitor 1, we identified compound 27, featuring a 10-fold improved aqueous solubility, a 10-fold improved inhibition of topoisomerase IV from A. baumannii and P. aeruginosa, a 10-fold decreased inhibition of human topoisomerase II alpha, and no cross-resistance to novobiocin. Cocrystal structures of 1 in complex with Escherichia coli GyrB24 and (S)-27 in complex with A. baumannii GyrB23 and P. aeruginosa GyrB24 revealed their binding to the ATP-binding pocket of the GyrB subunit. In further optimization steps, solubility, plasma free fraction, and other ADME properties of 27 were improved by fine-tuning of lipophilicity. In particular, analogs of 27 with retained anti-Gram-negative activity and improved plasma free fraction were identified. The series was found to be nongenotoxic, nonmutagenic, devoid of mitochondrial toxicity, and possessed no ion channel liabilities.

Place, publisher, year, edition, pages
AMER CHEMICAL SOC American Chemical Society (ACS), 2023. Vol. 66, no 2, p. 1380-1425
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Medicinal Chemistry
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URN: urn:nbn:se:uu:diva-497765DOI: 10.1021/acs.jmedchem.2c01597ISI: 000926481700001PubMedID: 36634346OAI: oai:DiVA.org:uu-497765DiVA, id: diva2:1742239
Available from: 2023-03-08 Created: 2023-03-08 Last updated: 2024-01-15Bibliographically approved

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Hughes, DiarmaidHuseby, Douglas L.Cao, ShaSimoff, IvailoSvensson, RichardBirnir, BryndisKorol, SergiyJin, Zhe

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Cotman, Andrej EmanuelHughes, DiarmaidHuseby, Douglas L.Cao, ShaCrone, LisaSimoff, IvailoSvensson, RichardBirnir, BryndisKorol, SergiyJin, ZheJanssen, Guido V.
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Department of Cell and Molecular BiologyDepartment of Medical Biochemistry and MicrobiologyDepartment of PharmacyScience for Life Laboratory, SciLifeLabDepartment of Medical Cell Biology
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