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The method developer's guide to oligonucleotide design
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.ORCID iD: 0000-0002-1864-1258
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.ORCID iD: 0000-0002-7533-043X
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.ORCID iD: 0000-0002-1565-6155
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences.ORCID iD: 0000-0002-0915-5303
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2024 (English)In: Expert Review of Proteomics, ISSN 1478-9450, E-ISSN 1744-8387, Vol. 21, no 1-3, p. 65-80Article, review/survey (Refereed) Published
Abstract [en]

Introduction

Development of new methods is essential to make great leaps in science, opening up new avenues for research, but the process behind method development is seldom described.

Areas covered

Over the last twenty years we have been developing several new methods, such as in situ PLA, proxHCR, and MolBoolean, using oligonucleotide-conjugated antibodies to visualize protein-protein interactions. Herein, we describe the rationale behind the oligonucleotide systems of these methods. The main objective of this paper is to provide researchers with a description on how we thought when we designed those methods. We also describe in detail how the methods work and how one should interpret results.

Expert opinion

Understanding how the methods work is important in selecting an appropriate method for your experiments. We also hope that this paper may be an inspiration for young researchers to enter the field of method development. Seeing a problem is a motivation to develop a solution.

Place, publisher, year, edition, pages
Taylor & Francis, 2024. Vol. 21, no 1-3, p. 65-80
Keywords [en]
Method development, oligonucleotide design, microscopy, Protein-protein interactions, antibodies, proximity ligation
National Category
Biochemistry Molecular Biology
Identifiers
URN: urn:nbn:se:uu:diva-533851DOI: 10.1080/14789450.2024.2318565ISI: 001163477100001PubMedID: 38363709OAI: oai:DiVA.org:uu-533851DiVA, id: diva2:1880496
Funder
Swedish Cancer Society, 22 2306 PjAvailable from: 2024-07-01 Created: 2024-07-01 Last updated: 2025-02-20Bibliographically approved

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Wenson, LeonieLeino, MattiasJarvius, MalinHeldin, JohanSöderberg, Ola

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