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Antibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology.ORCID iD: 0000-0001-9974-578x
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Biochemistry and Microbiology.ORCID iD: 0000-0003-3033-9219
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Medicinal Chemistry, Drug Design and Discovery.ORCID iD: 0009-0003-2707-3648
Uppsala University, Disciplinary Domain of Science and Technology, Biology, Department of Cell and Molecular Biology, Structural Biology.
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2024 (English)In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 0027-8424, E-ISSN 1091-6490, Vol. 121, no 15, article id e2317274121Article in journal (Refereed) Published
Abstract [en]

Here, we describe the identification of an antibiotic class acting via LpxH, a clinically unexploited target in lipopolysaccharide synthesis. The lipopolysaccharide synthesis pathway is essential in most Gram-negative bacteria and there is no analogous pathway in humans. Based on a series of phenotypic screens, we identified a hit targeting this pathway that had activity on efflux-defective strains of Escherichia coli. We recognized common structural elements between this hit and a previously published inhibitor, also with activity against efflux-deficient bacteria. With the help of X-ray structures, this information was used to design inhibitors with activity on efflux-proficient, wild-type strains. Optimization of properties such as solubility, metabolic stability and serum protein binding resulted in compounds having potent in vivo efficacy against bloodstream infections caused by the critical Gram-negative pathogens E. coli and Klebsiella pneumoniae. Other favorable properties of the series include a lack of pre-existing resistance in clinical isolates, and no loss of activity against strains expressing extended-spectrum-beta-lactamase, metallo-beta-lactamase, or carbapenemase-resistance genes. Further development of this class of antibiotics could make an important contribution to the ongoing struggle against antibiotic resistance.

Place, publisher, year, edition, pages
Proceedings of the National Academy of Sciences (PNAS), 2024. Vol. 121, no 15, article id e2317274121
Keywords [en]
antibiotics, structure-based drug design, lipopolysaccharide, Gram-negative, LpxH
National Category
Medicinal Chemistry Infectious Medicine Microbiology in the medical area Biochemistry Molecular Biology Organic Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-540058DOI: 10.1073/pnas.2317274121ISI: 001314718600002PubMedID: 38579010Scopus ID: 2-s2.0-85194757767OAI: oai:DiVA.org:uu-540058DiVA, id: diva2:1905192
Funder
Swedish Research CouncilSwedish Research CouncilAvailable from: 2024-10-11 Created: 2024-10-11 Last updated: 2025-02-20Bibliographically approved

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Huseby, Douglas L.Cao, ShaZamaratski, EdouardSooriyaarachchi, SanjeewaniAhmad, ShabbirBergfors, TereseBacklund, MariaSimoff, IvailoBerruga Fernández, TaliaAntonov, DmitryLindström, StefanOlanders, GustavBrandt, PeterBaranczewski, PawelJones, AlwynMowbray, SherryHughes, DiarmaidKarlén, Anders

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Huseby, Douglas L.Cao, ShaZamaratski, EdouardSooriyaarachchi, SanjeewaniAhmad, ShabbirBergfors, TereseBobileva, OlgaGukalova, BaibaBacklund, MariaSimoff, IvailoBerruga Fernández, TaliaAntonov, DmitryLindström, StefanOlanders, GustavBrandt, PeterBaranczewski, PawelJones, AlwynMowbray, SherryHughes, DiarmaidKarlén, Anders
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Department of Medical Biochemistry and MicrobiologyDrug Design and DiscoveryStructural BiologyDepartment of PharmacyDepartment of Medicinal ChemistryScience for Life Laboratory, SciLifeLab
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Proceedings of the National Academy of Sciences of the United States of America
Medicinal ChemistryInfectious MedicineMicrobiology in the medical areaBiochemistryMolecular BiologyOrganic Chemistry

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