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PiNN: equivariant neural network suite for modelling electrochemical systems
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry.ORCID iD: 0000-0003-3931-6291
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry.ORCID iD: 0009-0007-8171-3983
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry. (Wallenberg Initiative Materials Science for Sustainability)
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Structural Chemistry.ORCID iD: 0009-0005-6684-4614
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2025 (English)In: Journal of Chemical Theory and Computation, ISSN 1549-9618, E-ISSN 1549-9626, Vol. 21, no 3, p. 1382-1395Article in journal (Refereed) Published
Abstract [en]

Electrochemical energy storage and conversion play increasingly important roles in electrification and sustainable development across the globe. A key challenge therein is to understand, control, and design electrochemical energy materials with atomistic precision. This requires inputs from molecular modeling powered by machine learning (ML) techniques. In this work, we have upgraded our pairwise interaction neural network Python package PiNN via introducing equivariant features to the PiNet2 architecture for fitting potential energy surfaces along with PiNet2-dipole for dipole and charge predictions as well as PiNet2-χ for generating atom-condensed charge response kernels. By benchmarking publicly accessible data sets of small molecules, crystalline materials, and liquid electrolytes, we found that the equivariant PiNet2 shows significant improvements over the original PiNet architecture and provides a state-of-the-art overall performance. Furthermore, leveraging on plug-ins such as PiNNAcLe for an adaptive learn-on-the-fly workflow in generating ML potentials and PiNNwall for modeling heterogeneous electrodes under external bias, we expect PiNN to serve as a versatile and high-performing ML-accelerated platform for molecular modeling of electrochemical systems.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2025. Vol. 21, no 3, p. 1382-1395
Keywords [en]
machine learning, molecular dynamics, liquid electrolyte, ion transport, proton transfer, double layer, supercapacitor
National Category
Materials Chemistry Computer Sciences
Research subject
Chemistry with specialization in Materials Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-544807DOI: 10.1021/acs.jctc.4c01570ISI: 001409940900001PubMedID: 39883580Scopus ID: 2-s2.0-85216813378OAI: oai:DiVA.org:uu-544807DiVA, id: diva2:1919645
Funder
EU, European Research Council, 949012Knut and Alice Wallenberg Foundation, WISE-AP01- PD37
Note

De två första författarna delar förstaförfattarskapet

Available from: 2024-12-09 Created: 2024-12-09 Last updated: 2026-04-22Bibliographically approved
In thesis
1. Dipole and Charge Prediction for Electrochemical Systems from Atomistic Machine Learning
Open this publication in new window or tab >>Dipole and Charge Prediction for Electrochemical Systems from Atomistic Machine Learning
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Due to the increasing demand for energy, sustainable energy generation and storage are becoming more and more important in society and research. Electrochemical energy storage devices such as electrochemical double-layer capacitors (EDLCs) play an important role in fulfilling this need. To understand, control and design EDLCs at atomic precision, physical insights from atomistic simulation are clearly needed. However, atomistic simulation of EDLCs faces challenges such as the large system size and the complex chemistry involved at electrified solid-liquid interfaces. To address these challenges, machine learning models for charge prediction have been developed to aid the atomistic simulations of EDLCs in this thesis. Here, a divide-and-conquer approach was taken, and the electrolyte and electrode component were investigated separately.

Initially, a neural network approach called PiNet-dipole was developed to model the supercell polarization in liquid water using two constraints. First, the displacement of the atomic charges is proportional to the itinerant polarization. Second, each water molecule has a net charge of zero. In doing so, a molecular dipole moment distribution can be inferred for liquid water that is surprisingly similar to that computed from Wannier centers. More importantly, PiNet-dipole provides a way to predict atomic charge without resorting to any predefined charge partition schemes. This is followed by using a class of machine learning models called PiNet-chi to predict the response charge as the result of an applied electric field for both organic electrolyte molecules and graphene analogues. Both of these models were then upgraded through the addition of equivariant features in PiNet2. This opened up new ways of predicting dipole moment for both small molecules and condensed phase systems, allowing expansion to the PiNet2-dipole family and enabling a more expressive atomic charge prediction model.

Finally, by combining the PiNet(2)-dipole and the PiNet(2)-chi models and integrating them with the semi-classical molecular dynamics code MetalWalls, the PiNNwall interface was developed to model polarizable and heterogeneous electrodes. PiNNwall was then used to study chemically doped graphene and graphene oxide under different electrical boundary conditions, as well as to investigate the influence of the proton charge on aqueous EDLCs.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. p. 70
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2484
Keywords
electrochemical energy storage, double-layer capacitor, charge response kernel, molecular dipole moment, atomic charge, machine learning, atomistic simulation
National Category
Materials Chemistry
Research subject
Chemistry with specialization in Materials Chemistry
Identifiers
urn:nbn:se:uu:diva-544810 (URN)978-91-513-2334-3 (ISBN)
Public defence
2025-02-11, Å101121, Sonja-Lyttkens, Ångströmlaboratoriet, Lägerhyddsvägen 1, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2025-01-10 Created: 2024-12-09 Last updated: 2025-01-16Bibliographically approved

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Li, JichenKnijff, LisanneZhang, Zhan-YunAndersson, LinnéaZhang, Chao

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