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Identification of candidate biomarkers in neurological and psychiatric health
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Surgical Sciences, Functional Pharmacology and Neuroscience.
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Psychiatric and neurological diseases present substantial challenges in healthcare, affecting millions of individuals worldwide. Conditions such as depression, trigeminal neuralgia (TN), and narcolepsy have a profound impact on the quality of life for both patients and their families. The complex nature of these conditions necessitates the development of innovative diagnostic and treatment strategies. In recent years, the importance of biomarkers in understanding, diagnosing, and managing psychiatric and neurological diseases has emerged as a promising field of research. In the current thesis, five studies were conducted to identify candidate biomarkers in depression, TN, and narcolepsy. Study I validated depression-associated genetic variants in the UK Biobank (UKB) cohort, with transcriptome and DNA methylation analyses in independent datasets. Eight single nucleotide polymorphisms corresponding to six protein-coding genes (TNXB, NCAM1, LTBP3, BTN3A2, DAG1, FHIT) were strongly linked to depression. Study II analyzed 92 proteins in cerebrospinal fluid and serum from TN patients, compared with multiple sclerosis patients and controls. Several proteins, including SFRP1, FKBP5, and TBCB, were elevated in TN, suggesting their relevance in disease mechanisms. Study III examined protein levels in adolescents assessed for depression in the domestic Psychiatric Health in Adolescent Study (PSY cohort) in Sweden, with transcriptome validation in independent cohorts. Key findings highlighted protein and transcriptomic differences, particularly in PPP3R1, implicating the calcineurin pathway and prefrontal cortex in depression. Study IV explored genetic evidence in the UKB to validate the role of 17 proteins from previous studies in TN. Novel associations were identified with C8B (complement system) and MFGE8 (neuroinflammation regulation), highlighting their roles in TN pathology. Finally, Study V assessed protein biomarkers in narcolepsy using Swedish and Finnish cohorts, with transcriptome validation in an independent dataset. The identified candidate proteins were indicative of neural development involving survival, growth, and differentiation (UNC5C, VWC2, GFR-alpha-1, ADAM23), oxidative stress (HAGH), immune response (CLEC10A), and cell cycle regulation (ILKAP). Collectively, these studies identify potential biomarkers across these conditions, offering insights into their underlying mechanisms. The findings expand our understanding of psychiatric and neurological health and may inform future research and therapeutic strategies.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. , p. 64
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine, ISSN 1651-6206 ; 2119
Keywords [en]
Biomarkers, genomics, transcriptomics, proteomics, depression, trigeminal neuralgia, narcolepsy
National Category
Neurosciences Neurology Psychiatry
Research subject
Medical Science
Identifiers
URN: urn:nbn:se:uu:diva-548490ISBN: 978-91-513-2364-0 (print)OAI: oai:DiVA.org:uu-548490DiVA, id: diva2:1931207
Public defence
2025-03-21, H:son Holmdahlsalen, Akademiska sjukhuset, Ingång 100/101, Dag Hammarskjölds Väg 8, Uppsala, 09:00 (English)
Opponent
Supervisors
Available from: 2025-02-26 Created: 2025-01-25 Last updated: 2025-03-17
List of papers
1. Identification and validation of depression-associated genetic variants in the UK Biobank cohort with transcriptome and DNA methylation analyses in independent cohorts
Open this publication in new window or tab >>Identification and validation of depression-associated genetic variants in the UK Biobank cohort with transcriptome and DNA methylation analyses in independent cohorts
(English)Manuscript (preprint) (Other academic)
National Category
Medical and Health Sciences Medical Genetics and Genomics
Research subject
Psychiatry
Identifiers
urn:nbn:se:uu:diva-540072 (URN)
Available from: 2024-10-09 Created: 2024-10-09 Last updated: 2025-02-10
2. Exploring biomarkers in trigeminal neuralgia patients operated with microvascular decompression: A comparison with multiple sclerosis patients and non-neurological controls
Open this publication in new window or tab >>Exploring biomarkers in trigeminal neuralgia patients operated with microvascular decompression: A comparison with multiple sclerosis patients and non-neurological controls
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2024 (English)In: European Journal of Pain, ISSN 1090-3801, E-ISSN 1532-2149, Vol. 28, no 6, p. 929-942Article in journal (Refereed) Published
Abstract [en]

BACKGROUND: Trigeminal neuralgia (TN) is a severe facial pain condition often associated with a neurovascular conflict. However, neuroinflammation has also been implicated in TN, as it frequently co-occurs with multiple sclerosis (MS).

METHODS: We analysed protein expression levels of TN patients compared to MS patients and controls. Proximity Extension Assay technology was used to analyse the levels of 92 proteins with the Multiplex Neuro-Exploratory panel provided by SciLifeLab, Uppsala, Sweden. Serum and CSF samples were collected from TN patients before (n = 33 and n = 27, respectively) and after (n = 28 and n = 8, respectively) microvascular decompression surgery. Additionally, we included samples from MS patients (n = 20) and controls (n = 20) for comparison.

RESULTS: In both serum and CSF, several proteins were found increased in TN patients compared to either MS patients, controls, or both, including EIF4B, PTPN1, EREG, TBCB, PMVK, FKBP5, CD63, CRADD, BST2, CD302, CRIP2, CCL27, PPP3R1, WWP2, KLB, PLA2G10, TDGF1, SMOC1, RBKS, LTBP3, CLSTN1, NXPH1, SFRP1, HMOX2, and GGT5. The overall expression of the 92 proteins in postoperative TN samples seems to shift towards the levels of MS patients and controls in both serum and CSF, as compared to preoperative samples. Interestingly, there was no difference in protein levels between MS patients and controls.

CONCLUSIONS: We conclude that TN patients showed increased serum and CSF levels of specific proteins and that successful surgery normalizes these protein levels, highlighting its potential as an effective treatment. However, the similarity between MS and controls challenges the idea of shared pathophysiology with TN, suggesting distinct underlying mechanisms in these conditions.

SIGNIFICANCE: This study advances our understanding of trigeminal neuralgia (TN) and its association with multiple sclerosis (MS). By analysing 92 protein biomarkers, we identified distinctive molecular profiles in TN patients, shedding light on potential pathophysiological mechanisms. The observation that successful surgery normalizes many protein levels suggests a promising avenue for TN treatment. Furthermore, the contrasting protein patterns between TN and MS challenge prevailing assumptions of similarity between the two conditions and point to distinct pathophysiological mechanisms.

Place, publisher, year, edition, pages
John Wiley & Sons, 2024
National Category
Neurology
Identifiers
urn:nbn:se:uu:diva-519432 (URN)10.1002/ejp.2231 (DOI)001133731000001 ()38158702 (PubMedID)
Available from: 2024-01-08 Created: 2024-01-08 Last updated: 2025-01-25Bibliographically approved
3. Depression proteomic profiling in adolescents with transcriptome analyses in independent cohorts
Open this publication in new window or tab >>Depression proteomic profiling in adolescents with transcriptome analyses in independent cohorts
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2024 (English)In: Frontiers in Psychiatry, E-ISSN 1664-0640, Vol. 15, article id 1372106Article in journal (Refereed) Published
Abstract [en]

Introduction Depression is a major global burden with unclear pathophysiology and poor treatment outcomes. Diagnosis of depression continues to rely primarily on behavioral rather than biological methods. Investigating tools that might aid in diagnosing and treating early-onset depression is essential for improving the prognosis of the disease course. While there is increasing evidence of possible biomarkers in adult depression, studies investigating this subject in adolescents are lacking.Methods In the current study, we analyzed protein levels in 461 adolescents assessed for depression using the Development and Well-Being Assessment (DAWBA) questionnaire as part of the domestic Psychiatric Health in Adolescent Study conducted in Uppsala, Sweden. We used the Proseek Multiplex Neuro Exploratory panel with Proximity Extension Assay technology provided by Olink Bioscience, followed by transcriptome analyses for the genes corresponding to the significant proteins, using four publicly available cohorts.Results We identified a total of seven proteins showing different levels between DAWBA risk groups at nominal significance, including RBKS, CRADD, ASGR1, HMOX2, PPP3R1, CD63, and PMVK. Transcriptomic analyses for these genes showed nominally significant replication of PPP3R1 in two of four cohorts including whole blood and prefrontal cortex, while ASGR1 and CD63 were replicated in only one cohort.Discussion Our study on adolescent depression revealed protein-level and transcriptomic differences, particularly in PPP3R1, pointing to the involvement of the calcineurin pathway in depression. Our findings regarding PPP3R1 also support the role of the prefrontal cortex in depression and reinforce the significance of investigating prefrontal cortex-related mechanisms in depression.

Place, publisher, year, edition, pages
Frontiers Media S.A., 2024
Keywords
depression, proteome, transcriptome, adolescents, psychiatry
National Category
Psychiatry
Identifiers
urn:nbn:se:uu:diva-531087 (URN)10.3389/fpsyt.2024.1372106 (DOI)001233868300001 ()38812487 (PubMedID)
Available from: 2024-06-13 Created: 2024-06-13 Last updated: 2025-01-25Bibliographically approved
4. Genomic Validation in the UK Biobank Cohort Suggests a Role of C8B and MFG-E8 in the Pathogenesis of Trigeminal Neuralgia
Open this publication in new window or tab >>Genomic Validation in the UK Biobank Cohort Suggests a Role of C8B and MFG-E8 in the Pathogenesis of Trigeminal Neuralgia
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2024 (English)In: Journal of Molecular Neuroscience, ISSN 0895-8696, E-ISSN 1559-1166, Vol. 74, no 4, article id 91Article in journal (Refereed) Published
Abstract [en]

Trigeminal neuralgia (TN) is a severe facial pain disease of uncertain pathophysiology and unclear genetic background. Although recent research has reported a more important role of genetic factors in TN pathogenesis, few candidate genes have been proposed to date. The present study aimed to identify independent genetic variants in the protein-coding genes associated with TN. We focused on genes previously linked to TN based on the results of four proteomic studies conducted by our research team. The goal was to validate these findings on the genetic level to enhance our understanding of the role of genetics in TN. The study is based on the participants from UK Biobank cohort. Following quality control, 175 independent single nucleotide polymorphisms (SNPs) in 17 genes were selected. The study sample comprised of diagnosed TN cases (N = 555) and randomly matched controls (N = 6245) based on specific criteria. Two SNPs corresponding to C8B rs706484 [odds ratio (OR) (95% confidence interval (CI)): 1.357 (1.158–1.590); p: 0.00016] and MFG-E8 rs2015495 [OR (95% CI): 1.313 (1.134–1.521); p: 0.00028] showed significant positive association with TN, indicating a positive effect of the SNP alleles on gene expression and disease risk. Interestingly, both SNPs are Expression Quantitative Trait Loci (eQTLs), and are associated with changes in the expression activity of their corresponding gene. Our findings suggest novel genetic associations between C8B, a key component of the complement system, and MFG-E8, which plays a role in regulating neuroinflammation, in relation to TN. The identified genetic variations may help explain why some individuals develop TN while others do not, indicating a potential genetic predisposition to the condition.

Place, publisher, year, edition, pages
Springer, 2024
Keywords
Trigeminal neuralgia, Proteome, Independent genetic variants, UK Biobank
National Category
Medical Genetics and Genomics Neurology Genetics and Genomics
Identifiers
urn:nbn:se:uu:diva-540375 (URN)10.1007/s12031-024-02263-x (DOI)001325838600001 ()39361088 (PubMedID)
Funder
Uppsala UniversitySwedish Research CouncilThe Swedish Brain Foundation
Note

De två sista författarna delar sistaförfattarskapet

Available from: 2024-10-17 Created: 2024-10-17 Last updated: 2025-02-10Bibliographically approved
5. Exploratory Assessment of Candidate Biomarkers in Narcolepsy: Identification and Validation in H1N1-Vaccinated Cohorts at the Proteome and Transcriptome Levels
Open this publication in new window or tab >>Exploratory Assessment of Candidate Biomarkers in Narcolepsy: Identification and Validation in H1N1-Vaccinated Cohorts at the Proteome and Transcriptome Levels
Show others...
(English)Manuscript (preprint) (Other academic)
National Category
Neurosciences
Identifiers
urn:nbn:se:uu:diva-548489 (URN)
Available from: 2025-01-25 Created: 2025-01-25 Last updated: 2025-01-25

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12345671 of 25
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Output format
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