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Item Response Modeling and Artificial Neural Network for Differentiation of Parkinson's Patients and Subjects Without Evidence of Dopaminergic Deficit.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy. (Pharmacometrics)ORCID iD: 0000-0001-7272-1657
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences. Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy.ORCID iD: 0000-0002-2255-3904
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy. Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences. (Pharmacometrics)ORCID iD: 0000-0003-1258-8297
2025 (English)In: CPT: Pharmacometrics and Systems Pharmacology (PSP), E-ISSN 2163-8306Article in journal (Refereed) Epub ahead of print
Abstract [en]

Approximately 15% of patients suspected of having Parkinson's disease (PD) present dopamine active transporter (DaT) scans without evidence of dopaminergic deficits (SWEDD), most of which will never develop PD. Leveraging Movement Disorders Society Unified Parkinson's Disease Rating Scale (MDS-UPDRS) scores from the Parkinson's Progression Markers Initiative, three different models of varying complexity, (total score, item response theory (IRT) and artificial neural network (ANN)) were evaluated to determine their ability to differentiate between PD and SWEDDs. Each of the models provided as output a predicted probability of having PD (PDeNoPD). Both the IRT and ANN methods performed well as classifiers; ROC AUC > 80%, sensitivity > 93%, and precision ~90% when assuming a probability cutoff of PDeNoPD ≥ 50%. Specificity was 43% and 38% for IRT and ANN respectively. Matthews correlation coefficient (MCC) was also evaluated as a metric to address potential bias of majority positive class. At all cutoffs at or above 50%, the IRT and ANN model performed similarly and achieved a MCC of at least 0.3, indicating at least a moderate positive relationship for classifier performance. In contrast, the total score model was a poor classifier, for all metrics and cutoffs. Using item-level data the proposed methodologies differentiated PD patients from SWEDDs with a degree of sensitivity and specificity that may compete with clinical examination and could aid in selecting DaTscan candidates. The choice of cutoff criteria, quality metric, and classifier model are contingent upon specific clinical needs.

Place, publisher, year, edition, pages
John Wiley & Sons, 2025.
Keywords [en]
Parkinson's disease, classification, discrete data models, disease progression, item response theory, machine learning, mixed effect models, neuroscience, pharmacometrics
National Category
Pharmaceutical Sciences
Research subject
Pharmaceutical Science
Identifiers
URN: urn:nbn:se:uu:diva-552594DOI: 10.1002/psp4.70000PubMedID: 40045658OAI: oai:DiVA.org:uu-552594DiVA, id: diva2:1944989
Available from: 2025-03-17 Created: 2025-03-17 Last updated: 2025-03-21
In thesis
1. Pharmacometric Evaluation of Item Response Modeling to Inform Clinical Drug Development
Open this publication in new window or tab >>Pharmacometric Evaluation of Item Response Modeling to Inform Clinical Drug Development
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Drug development is the process of advancing novel therapeutics to market to improve patient outcomes. However, in hard-to-treat diseases like neurodegenerative disorders there is a high failure rate in late-stage trials, creating significant unmet needs. This highlights the need for more sensitive endpoints, improved trial designs, or analytical methods to optimize data utilization.  In many diseases, clinical outcome assessments (COAs) serve as clinical endpoints and are often reported as a composite score, potentially losing important information present at the item level. Alternatively, item response theory (IRT) leverages item-level data to describe the relationship between a subject’s response on an item and their underlying ability, through item characteristic functions (ICFs), offering a more informed analysis of COAs. This thesis evaluates the robustness of IRT, estimation strategies and its applicability to model rating-scale-based COAs to facilitate model-informed drug development (MIDD). 

For single time point analysis, our findings suggest at least 100 subjects and 20 items are generally sufficient. Comparison of Laplace and Gaussian-hermite quadrature (GHQ-EM) for the estimation of item parameters, indicated similar accuracy and precision with slight improvement in accuracy for GHQ-EM.   IRT models in reduced assessments were relatively stable up to ~40-60% information remaining. However, removing items shifts the measured disease construct, which can affect the accurate assessment of disease progression and drug effect. The trade-offs in information lost or gained should be considered when shortening assessments. Comparison of two common estimation strategies for determining ICFs indicated similar performance, each providing different advantages. IRT was also effective in classifying disease (Parkinson’s vs SWEDDs), showing comparable performance to artificial neural networks. Additionally, IRT demonstrated superior power for detecting symptomatic treatment effect in a short duration trial compared to traditional approaches, highlighting IRT’s potential not only for endpoint analyses but as a strategic tool to optimize trial design. Greater public disclosure of applied IRT in real-time drug development, such as inclusion in trial protocols or in regulatory milestones could foster broader acceptance and wider adoption beyond ad-hoc analyses. In conclusion, this thesis presents a methodological foundation for successful implementation of IRT in a pharmacometric framework to facilitate MIDD and inform clinical decision-making.

 

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. p. 78
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy, ISSN 1651-6192 ; 375
Keywords
pharmacometrics, nonlinear mixed-effects models, item response theory, Parkinson's Disease, Alzheimer's Disease, composite score, clinical outcome assessments
National Category
Pharmaceutical Sciences
Research subject
Pharmaceutical Science
Identifiers
urn:nbn:se:uu:diva-552893 (URN)978-91-513-2438-8 (ISBN)
Public defence
2025-05-13, A1:107a, BMC, Husargatan 3, Uppsala, 13:15 (English)
Opponent
Supervisors
Available from: 2025-04-22 Created: 2025-03-21 Last updated: 2025-04-22

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Arrington, LeticiaPlan, Elodie L.Karlsson, Mats O.

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