Logo: to the web site of Uppsala University

uu.sePublications from Uppsala University
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Metabolic engineering of Synechocystis PCC 6803 for acetate production
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - Ångström, Molecular Biomimetics.
2026 (English)Doctoral thesis, comprehensive summary (Other academic)
Description
Abstract [en]

The increasing need for sustainable production has driven interests towards photosynthetic microorganisms as cell factories. Their ability of capture and utilization of CO2 makes them excellent candidates for production. In this thesis, the cyanobacterium Synechocystis PCC 6803 was engineered to enhance acetate production, under photoautotrophic conditions. Native acetate formation in this organism as a side product, is low and was quantified for the first time. Introduction of a heterologous phosphoketolase established a direct link between the Calvin–Benson–Bassham cycle and acetyl-P, resulting in a 40-fold increase in acetate production. Further pathway optimization, including overexpression of phosphotransacetylase, increased production up to 120-fold compared to the control. High-density cultivation of a strain overexpressing also acetate kinase, enabled cumulative acetate titer of 7.1 g/L over 12 days, among the highest reported in cyanobacteria.

To further improve yields, strategies targeting carbon fixation were explored. Overexpression of key CBB-cycle enzymes, revealed product-dependent effects. While combination of the enzymes enhanced ethanol production; acetate production benefited primarily from single gene overexpression (aldolase). The contrasting responses are attributed to differences in pathway precursors, with phosphoketolase competing directly for CBB intermediates while ethanol’s precursor is pyruvate. Deletion of CP12 protein improved acetate production in specific backgrounds, highlighting the importance of carbon flux regulation.

Proteomic and metabolomic analyses demonstrated that the engineered pathway creates a strong metabolic sink, increasing carbon fixation while imposing metabolic stress. Further acetate production was enhanced through overexpression of bicarbonate transporters while less stress was noticed, emphasizing the importance of balancing carbon acquisition and allocation.

Finally, the engineered strains were successfully applied in synthetic consortia, where photosynthetically produced acetate supported the formation of value-added products such as hydrogen and 1-butanol.

Overall, this work establishes Synechocystis as a promising platform for sustainable acetate production and highlights the importance of integrating metabolic engineering with systems-level analysis.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2026. , p. 89
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2671
Keywords [en]
Cyanobacteria, Synechocystis PCC 6803, metabolic engineering, acetate, carbon fixation, CBB-cycle, synthetic consortia.
National Category
Molecular Biology Other Industrial Biotechnology
Identifiers
URN: urn:nbn:se:uu:diva-584283ISBN: 978-91-513-2827-0 (print)OAI: oai:DiVA.org:uu-584283DiVA, id: diva2:2052292
Public defence
2026-06-05, 101121, Sonja Lyttkens, Ångströmlaboratoriet, Lägerhyddsvägen 1, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2026-05-12 Created: 2026-04-12 Last updated: 2026-05-12
List of papers
1. Exploring and increased acetate biosynthesis in Synechocystis PCC 6803 through insertion of a heterologous phosphoketolase and overexpressing phosphotransacetylase
Open this publication in new window or tab >>Exploring and increased acetate biosynthesis in Synechocystis PCC 6803 through insertion of a heterologous phosphoketolase and overexpressing phosphotransacetylase
2025 (English)In: Metabolic engineering, ISSN 1096-7176, E-ISSN 1096-7184, Vol. 88, p. 250-260Article in journal (Refereed) Published
Abstract [en]

Acetate is a biological anion with many applications in the chemical and food industries. In addition to being a common microbial fermentative end-product, acetate can be produced by photosynthetic cyanobacteria from CO2 using solar energy. Using wild-type cells of the unicellular model cyanobacterium Synechocystis PCC 6803 only low levels of acetate are observed outside the cells. By inserting a heterologous phosphoketolase (PKPa) in the acs locus, encoding acetyl-CoA synthetase responsible for the irreversible conversion of acetate to acetyl-CoA, an increased level of 40 times was observed. Metabolite analyses indicate an enhanced Calvin-Benson-Bassham cycle, based on increased levels of glyceraldehyde 3-phosphate and fructose-1,6-biphosphate, while the decreased levels of 3-phosphoglycerate and pyruvate suggest a quick consumption of the fixed carbon. Acetyl-P and erythrose-4-phosphate showed significantly increased levels, as products of phosphoketolase, while acetylCoA remained stable through the experiment. The results of intra- and extra-cellular acetate levels clearly demonstrate an efficient excretion of produced acetate from the cells in the engineered strain. Knock-out of ach and pta showed a reduction in acetate production however, it was not as low as in cells with a single knock-out of ach. Overexpressing acetyl-CoA hydrolase (Ach) and acetate kinase (AckA) did not significantly increase production. In contrast, overexpressing phosphotransacetylase (Pta) in cells containing an inserted PKPa resulted in 80 times more acetate reaching 2.3 g/L after 14 days of cultivation.

Place, publisher, year, edition, pages
Elsevier, 2025
Keywords
Cyanobacteria, Phosphoketolase, Acetyl phosphate, G3P, FBP, Pyruvate, Acetyl-CoA, Acetate, Calvin-Benson-Bassham
National Category
Molecular Biology
Identifiers
urn:nbn:se:uu:diva-552028 (URN)10.1016/j.ymben.2025.01.008 (DOI)001431596900001 ()39863056 (PubMedID)2-s2.0-85215968106 (Scopus ID)
Available from: 2025-03-13 Created: 2025-03-13 Last updated: 2026-04-12Bibliographically approved
2. Increased acetate production in Synechocystis sp. PCC 6803 strain engineered with an operon of phosphoketolase and phosphotransacetylase and further overexpression of acetate kinase
Open this publication in new window or tab >>Increased acetate production in Synechocystis sp. PCC 6803 strain engineered with an operon of phosphoketolase and phosphotransacetylase and further overexpression of acetate kinase
2026 (English)In: Microbial Cell Factories, E-ISSN 1475-2859, Vol. 25, article id 61Article in journal (Refereed) Published
Abstract [en]

Background: Photosynthetic microorganisms, such as cyanobacteria, are promising candidates for sustainable production of chemicals. Photosynthesis is a unique process where light energy is used to convert CO2 into carbon metabolites that sustain the cell`s metabolism. One of these products is acetate, a chemical with various applications in industry. Metabolic engineering can be used to increase the titer of extracellular acetate in the unicellular cyanobacterium Synechocystis sp. PCC 6803 (Synechocystis).

Results: Simultaneous expression of phosphoketolase (PK) and phosphotransacetylase (Pta) resulted in an enhanced acetate titer in Synechocystis cells (Roussou et al. Metab Eng 88:250-260) [1]. In the present study these two enzymes were expressed in different locus in the genome as well as expressed in the same locus organized as a single operon. The latter design reached higher acetate production. Attempts to further optimize the production through the creation of fused protein did not result in significant higher values than 2.3 g/L previously reported. However, the production was further increased when acetate kinase (AckA) was additionally overexpressed. Cultivation of this strain in high density cultivation (CellDEG system) led to high levels of acetate with a maximum of 7.1 g/L cumulative acetate production after 12 days of experiment when the cultures were sampled every day.

Conclusions: Synechocystis sp. PCC 6803 is a candidate for sustainable acetate production driven by sunlight and CO2. The high level of acetate production is result of combining genomic integration of heterogenous genes in the cell and overexpression of native genes through self-replication vector. The production level achieved through the high-density cultivation reveal the strain capabilities when the growth conditions are optimal.

Place, publisher, year, edition, pages
Springer Nature, 2026
Keywords
Synechocystis sp. PCC 6803, Acetate, Phosphoketolase, Phosphotransacetylase, Acetate kinase, High-density cultivation, Metabolic engineering
National Category
Molecular Biology Microbiology
Identifiers
urn:nbn:se:uu:diva-582054 (URN)10.1186/s12934-026-02964-5 (DOI)001699346400001 ()41709309 (PubMedID)2-s2.0-105031266859 (Scopus ID)
Funder
Uppsala UniversityEU, Horizon 2020, 101000733
Available from: 2026-03-17 Created: 2026-03-17 Last updated: 2026-04-12Bibliographically approved
3. Further enhanced acetate production by overexpressing selected CBB-cycle enzymes in an engineered Synechocystis PCC 6803 strain
Open this publication in new window or tab >>Further enhanced acetate production by overexpressing selected CBB-cycle enzymes in an engineered Synechocystis PCC 6803 strain
2026 (English)In: Algal Research, ISSN 2211-9264, Vol. 96, article id 104714Article in journal (Refereed) Published
Abstract [en]

Cyanobacteria are promising microorganisms as cell factories due to their ability to perform oxygenic photosynthesis. During this process the cell produces metabolites through CO2 fixation powered by light energy. The main carbon fixation pathway in cyanobacteria is the Calvin-Benson-Bassham (CBB) cycle. Cyanobacteria, for example Synechocystis PCC 6803 (thereafter Synechocystis) have the ability to produce carbon compounds, for example acetate, as side products of their metabolism. Acetate production can be increased through the insertion of a phosphoketolase and overexpression of a phosphotransacetylase. In the present study the production of acetate was further tuned by overexpression of selected enzyme(s) of CBB-cycle. The enzymes selected was aldolase (FBA) and its combination with either fructose-1,6/sedoheptulose-1,7-bisphosphatase (FBP/SBPase) or transketolase (TK). The higher increase was noticed in the strain overexpressing FBA, 1.5 times fold increase, followed by the strain overexpressing both FBA and FBP/SBPase, while the overexpression of both FBA and TK did not influence the acetate production. However, when CP12, a small regulatory protein of the CBB-cycle, was knocked out, the strain overexpressing FBA and TK showed increased acetate titers while the other two combinations showed moderate increase. These results indicate the capability to optimize the acetate production through overexpression of FBA and emphasize the dynamic regulation of the CBB-cycle enzyme(s).

Place, publisher, year, edition, pages
Elsevier, 2026
Keywords
Acetate, Aldolase, Calvin-Bensson-Bassham cycle, Cyanobacteria, Fructose-1, 6/sedoheptulose-1, 7-bisphosphatase, Transketolase
National Category
Molecular Biology Other Industrial Biotechnology
Identifiers
urn:nbn:se:uu:diva-583788 (URN)10.1016/j.algal.2026.104714 (DOI)001756712500001 ()2-s2.0-105036397115 (Scopus ID)
Funder
EU, Horizon 2020
Available from: 2026-04-05 Created: 2026-04-05 Last updated: 2026-05-21Bibliographically approved
4. Metabolomic and proteomic analysis of Synechocystis PCC 6803 strains overproducing acetate and overexpressing inorganic carbon transporters reveal significant cell adaptations
Open this publication in new window or tab >>Metabolomic and proteomic analysis of Synechocystis PCC 6803 strains overproducing acetate and overexpressing inorganic carbon transporters reveal significant cell adaptations
Show others...
(English)Manuscript (preprint) (Other academic)
National Category
Other Industrial Biotechnology Molecular Biology
Identifiers
urn:nbn:se:uu:diva-583790 (URN)
Available from: 2026-04-05 Created: 2026-04-05 Last updated: 2026-04-12
5. Engineered cyanobacteria with additional overexpression of selected Calvin-Benson-Bassham enzymes show further increased ethanol production
Open this publication in new window or tab >>Engineered cyanobacteria with additional overexpression of selected Calvin-Benson-Bassham enzymes show further increased ethanol production
2021 (English)In: Metabolic Engineering Communications, ISSN 2214-0301, Vol. 12, article id e00161Article in journal (Refereed) Published
Abstract [en]

Cyanobacteria are one of the most promising microorganisms to produce biofuels and renewable chemicals due to their oxygenic autotrophic growth properties. However, to rely on photosynthesis, which is one of the main reasons for slow growth, low carbon assimlation rate and low production, is a bottleneck. To address this challenge, optimizing the Calvin-Benson-Bassham (CBB) cycle is one of the strategies since it is the main carbon fixation pathway. In a previous study, we showed that overexpression of either aldolase (FBA), transketolase (TK), or fructose-1,6/sedoheptulose-1,7-bisphosphatase (FBP/SBPase), enzymes responsible for RuBP regeneration and vital for controlling the CBB carbon flux, led to higher production rates and titers in ethanol producing strains of Synechocystis PCC 6803. In the present study, we investigated the combined effects of the above enzymes on ethanol production in Synechocystis PCC 6803.

The ethanol production of the strains overexpressing two CBB enzymes (FBA + TK, FBP/SBPase + FBA or FBP/SBPase + TK) was higher than the respective control strains, overexpressing either FBA or TK. The co-overexpression of FBA and TK led to more than 9 times higher ethanol production compared to the overexpression of FBA. Compared to TK the respective increase is 4 times more ethanol production. Overexpression of FBP/SBPase in combination with FBA showed 2.5 times higher ethanol production compared to FBA. Finally, co-overexpression of FBP/SBPase and TK reached about twice the production of ethanol compared to overexpression of only TK. This study clearly demonstrates that overexpression of two selected CBB enzymes leads to significantly increased ethanol production compared to overexpression of a single CBB enzyme.

Place, publisher, year, edition, pages
Elsevier, 2021
Keywords
Cyanobacteria, Calvin-Benson-Bassham, Ethanol, FBP/SBPase, TK, FBA, Carbon fixation
National Category
Biochemistry Molecular Biology
Identifiers
urn:nbn:se:uu:diva-496819 (URN)10.1016/j.mec.2021.e00161 (DOI)000905579700007 ()33520653 (PubMedID)
Funder
Swedish Energy Agency, P46607-1NordForsk, 82845
Available from: 2023-02-22 Created: 2023-02-22 Last updated: 2026-04-12Bibliographically approved
6. Engineering a Photoautotrophic Microbial Coculture toward Enhanced Biohydrogen Production
Open this publication in new window or tab >>Engineering a Photoautotrophic Microbial Coculture toward Enhanced Biohydrogen Production
Show others...
2024 (English)In: Environmental Science and Technology, ISSN 0013-936X, E-ISSN 1520-5851, Vol. 59, no 1, p. 337-348Article in journal (Refereed) Published
Abstract [en]

The application of synthetic phototrophic microbial consortia holds promise for sustainable bioenergy production. Nevertheless, strategies for the efficient construction and regulation of such consortia remain challenging. Applying tools of genetic engineering, this study successfully constructed a synthetic community of phototrophs using Rhodopseudomonas palustris (R. palustris) and an engineered strain of Synechocystis sp PCC6803 for acetate production (Synechocystis_acs), enabling the production of biohydrogen and fatty acids during nitrogen and carbon dioxide fixation. Elemental balance confirmed carbon capture and nitrogen fixation into the consortium. The strategy of circadian illumination effectively limited oxygen levels in the system, ensuring the activity of the nitrogenase in R. palustris, despite oxygenic photosynthesis happening in Synechocystis. When infrared light was introduced into the circadian illumination, the production of H2 (9.70 μmol mg–1) and fatty acids (especially C16 and C18) was significantly enhanced. Proteomic analysis indicated acetate exchange and light-dependent regulation of metabolic activities. Infrared illumination significantly stimulated the expression of proteins coding for nitrogen fixation, carbohydrate metabolism, and transporters in R. palustris, while constant white light led to the most upregulation of photosynthesis-related proteins in Synechocystis_acs. This study demonstrated the successful construction and light regulation of a phototrophic community, enabling H2 and fatty acid production through carbon and nitrogen fixation.

Place, publisher, year, edition, pages
American Chemical Society (ACS), 2024
Keywords
phototrophic community, H2 production, proteomics, metabolite exchange
National Category
Molecular Biology Microbiology
Identifiers
urn:nbn:se:uu:diva-555159 (URN)10.1021/acs.est.4c08629 (DOI)001378934800001 ()39668362 (PubMedID)2-s2.0-85214979749 (Scopus ID)
Funder
EU, Horizon 2020, 101000733
Available from: 2025-04-24 Created: 2025-04-24 Last updated: 2026-04-12Bibliographically approved
7. Synthetic consortia towards photosynthetically derived acetate for heterotrophic production of 1-butanol
Open this publication in new window or tab >>Synthetic consortia towards photosynthetically derived acetate for heterotrophic production of 1-butanol
(English)Manuscript (preprint) (Other academic)
National Category
Other Industrial Biotechnology Molecular Biology
Identifiers
urn:nbn:se:uu:diva-583789 (URN)
Available from: 2026-04-05 Created: 2026-04-05 Last updated: 2026-04-12
8. Engineering cyanobacteria for photosynthetic butanol production
Open this publication in new window or tab >>Engineering cyanobacteria for photosynthetic butanol production
Show others...
2021 (English)In: Photosynthesis: Biotechnological Applications with Microalgae, Germany: Walter de Gruyter, 2021Chapter in book (Other academic)
Place, publisher, year, edition, pages
Germany: Walter de Gruyter, 2021
National Category
Bioenergy
Identifiers
urn:nbn:se:uu:diva-583791 (URN)
Available from: 2026-04-07 Created: 2026-04-07 Last updated: 2026-04-12

Open Access in DiVA

UUThesis_Roussou,S-2026(2042 kB)63 downloads
File information
File name FULLTEXT01.pdfFile size 2042 kBChecksum SHA-512
c5bc17bb8569904b490a6fa05fc645d7ad5197dcf3f0641c6bfb6838b1c119b1827fc1b090779c1399f3ad6cd254bfffae6e598940903e633acb9809c3b80ec0
Type fulltextMimetype application/pdf

Search in DiVA

By author/editor
Roussou, Stamatina
By organisation
Molecular Biomimetics
Molecular BiologyOther Industrial Biotechnology

Search outside of DiVA

GoogleGoogle Scholar
The number of downloads is the sum of all downloads of full texts. It may include eg previous versions that are now no longer available

isbn
urn-nbn

Altmetric score

isbn
urn-nbn
Total: 251 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf