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DenOiS: Dual-Domain Denoising of Observation and Solution in Ultrasound Image Reconstruction
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division Vi3. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Computerized Image Analysis and Human-Computer Interaction. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Computerised Image Analysis.ORCID iD: 0000-0003-1737-0756
Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Division Vi3. Uppsala University, Disciplinary Domain of Science and Technology, Mathematics and Computer Science, Department of Information Technology, Computerised Image Analysis.ORCID iD: 0000-0002-8639-7373
(English)Manuscript (preprint) (Other academic)
Abstract [en]

Medical imaging aims to recover underlying tissue properties, using inexact (simplified/linearized) imaging models and often from inaccurate and incomplete measurements. Analytical reconstruction methods rely on hand-crafted regularization, sensitive to noise assumptions and parameter tuning. Among deep learning alternatives, plug-and-play (PnP) approaches learn regularization while incorporating imaging physics during inference, outperforming purely data-driven methods. The performance of all these approaches, however, still strongly depends on measurement quality and imaging model accuracy. In this work, we propose DenOiS, a framework that denoises both input observations and resulting solution in their respective domains. It consists of an observation refinement strategy that corrects degraded measurements while compensating for imaging model simplifications, and a diffusion-based PnP reconstruction approach that remains robust under missing measurements. DenOiS enables generalization to real data from training only in simulations, resulting in high-fidelity image reconstruction with noisy observations and inexact imaging models. We demonstrate this for speed-of-sound imaging as a challenging setting of quantitative ultrasound image reconstruction.

National Category
Medical Imaging
Identifiers
URN: urn:nbn:se:uu:diva-588525DOI: 10.48550/arXiv.2604.02105OAI: oai:DiVA.org:uu-588525DiVA, id: diva2:2067019
Available from: 2026-06-05 Created: 2026-06-05 Last updated: 2026-06-21
In thesis
1. Pulse-Echo Speed-of-Sound Reconstruction for Quantitative Ultrasound Imaging
Open this publication in new window or tab >>Pulse-Echo Speed-of-Sound Reconstruction for Quantitative Ultrasound Imaging
2026 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Speed of sound (SoS) is the longitudinal propagation speed of ultrasound waves in a medium, and it plays a central role in ultrasound imaging in several ways: Beamforming, which is the conversion of received time-domain echo signals into spatially resolved images, requires an assumed SoS. An inaccurate beamforming SoS leads to aberration artifacts, degrading the quality of conventional brightness-mode (B-mode) images and impairing other ultrasound modalities that rely on accurately beamformed data. SoS is also an emerging quantitative ultrasound biomarker that can inform about tissue composition and pathological state.

This thesis focuses on pulse-echo SoS estimation using conventional handheld ultrasound transducers. In particular, the thesis investigates displacement-based SoS estimation, where apparent shifts between images acquired with different transmit sequences are used to infer the underlying SoS. While displacement-based approaches are promising, their performance depends on several factors, including the accuracy of utilized imaging model, the choice of regularization, the quality of measurements, and the robustness of the reconstruction method.

This thesis addresses several of these challenges, developing accurate and robust pulse-echo SoS estimation methods and evaluating their utility in clinically relevant applications. The key methodological contributions include: an analytical global (single-value) SoS estimator based on transmission geometry; its extension to windowed SoS estimation in a region of interest; formulating plane-wave SoS imaging as a convolution problem for effectively learning an improved imaging model from data; and a model-based deep learning framework that combines plug-and-play reconstruction with a measurement-refinement module that simultaneously denoises measurements, inpaints missing ones, and compensates for simplifications in assumed imaging models. The proposed methods are successfully evaluated in breast ultrasound applications through breast density classification with our global SoS estimation and through breast lesion characterization with local SoS imaging. Overall, this thesis contributes to the development of robust pulse-echo SoS imaging methods and supports the continued translation of SoS toward a practical quantitative biomarker in clinical ultrasound.  

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2026. p. 79
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2694
Keywords
Beamforming, Inverse problems, Image reconstruction, Model-based deep learning, Breast density, Breast cancer
National Category
Medical Imaging Radiology and Medical Imaging Signal Processing Cancer and Oncology Computer Vision and Learning Systems Computer graphics and computer vision
Research subject
Computerized Image Processing
Identifiers
urn:nbn:se:uu:diva-588526 (URN)978-91-513-2891-1 (ISBN)
Public defence
2026-09-04, Room 2001, Ångströmlaboratoriet, Regementsvägen 10, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2026-08-17 Created: 2026-06-21 Last updated: 2026-08-17

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Bezek, Can DenizGöksel, Orcun

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