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Impact of Dynamically Exposed Polarity on Permeability and Solubility of Chameleonic Drugs Beyond the Rule of 5
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - BMC, Organic Chemistry.
Monash Univ, MIPS, Dept Med Chem, Victoria, Australia.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmacy. Uppsala University, Science for Life Laboratory, SciLifeLab. (UDOPP)
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - BMC, Organic Chemistry.ORCID iD: 0000-0002-8880-9247
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2018 (English)In: Journal of Medicinal Chemistry, ISSN 0022-2623, E-ISSN 1520-4804, Vol. 61, no 9, p. 4189-4202Article in journal (Refereed) Published
Abstract [en]

Conformational flexibility has been proposed to significantly affect drug properties outside rule-of-5 (Ro5) chemical space. Here, we investigated the influence of dynamically exposed polarity on cell permeability and aqueous solubility for a structurally diverse set of drugs and clinical candidates far beyond the Ro5, all of which populated multiple distinct conformations as revealed by X-ray crystallography. Efflux-inhibited (passive) Caco-2 cell permeability correlated strongly with the compounds’ minimum solvent-accessible 3D polar surface areas (PSA), whereas aqueous solubility depended less on the specific 3D conformation. Inspection of the crystal structures highlighted flexibly linked aromatic side chains and dynamically forming intramolecular hydrogen bonds as particularly effective in providing “chameleonic” properties that allow compounds to display both high cell permeability and aqueous solubility. These structural features, in combination with permeability predictions based on the correlation to solvent-accessible 3D PSA, should inspire drug design in the challenging chemical space far beyond the Ro5.

Place, publisher, year, edition, pages
2018. Vol. 61, no 9, p. 4189-4202
National Category
Medicinal Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-356490DOI: 10.1021/acs.jmedchem.8b00347ISI: 000432204800029PubMedID: 29608068OAI: oai:DiVA.org:uu-356490DiVA, id: diva2:1235967
Funder
Åke Wiberg FoundationMagnus Bergvall FoundationAvailable from: 2018-07-30 Created: 2018-07-30 Last updated: 2018-07-30Bibliographically approved

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Sebastiano, Matteo RossiBacklund, MariaPoongavanam, VasanthanathanMatsson, PärKihlberg, Jan

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Sebastiano, Matteo RossiBacklund, MariaPoongavanam, VasanthanathanCaron, GiuliaMatsson, PärKihlberg, Jan
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Organic ChemistryDepartment of PharmacyScience for Life Laboratory, SciLifeLab
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