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Characterization of Novel Solute Carriers in Humans, Mice and Flies: Solute Carriers in a Broad and Narrow Perspective
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Pharmacy, Department of Pharmaceutical Biosciences. (Molekylär Neurofarmakologi)ORCID iD: 0000-0002-9681-5129
2020 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

The solute carrier family is the largest family of membrane-bound transporters in humans, with 430 members divided into 65 subfamilies. They transport various substrates across lipid barriers and are vital for absorption, distribution, metabolism and excretion in all cell types in the body. Despite being involved in vital functions, and their effect on both physiology and pathophysiology, many transporters are not characterized. The aim of this thesis was to study newly identified putative solute carriers of which little is known. In Paper I, the relationship of solute carriers in humans and fruit flies was studied. The study revealed that 54 of the 65 subfamilies in humans have one or more orthologues in fruit flies, and a total of 381 orthologues were identified in fruit flies. In Paper II, a comprehensive study of the putative solute carriers and their response to different sugar concentrations were performed. Several, but not all, putative solute carriers were altered in cell cultures maintained in media containing low or no glucose, and the expression normalized upon refeeding with glucose. Similar results were observed in fruit flies subjected to complete starvation or diets with varying sugar concentrations. Last, in Paper III and IV, characterization of one putative solute carrier, UNC93A, was performed. The studies revealed that UNC93A was a conserved protein with an abundant expression in the body of mice but with a restricted expression in fruit flies. The protein was found to possibly be expressed at, or close to, the plasma membrane of cells and to co-localize with Twik-Acid sensitive potassium channels. UNC93A was found to be important for the renal function in fruit flies and to affect survival and membrane potentials in cells. The findings of this thesis establish a high conservation of several putative solute carriers and that they have a highly dynamic regulation during fluctuating energy and glucose availability. Further, while several clear biological aspects of UNC93A was identified, the exact function of transporter proteins is cumbersome to find and more research about these transporters is needed to fully understand their mechanistic role and their association and/or involvement in health and sickness.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2020. , p. 81
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Pharmacy, ISSN 1651-6192 ; 287
Keywords [en]
Solute carrier, SLC, Putative SLCs, Major facilitator superfamily, MFS, Drosophila melanogaster, Glucose metabolism, UNC93A, CG4928
National Category
Cell Biology Cell and Molecular Biology Evolutionary Biology Biochemistry Molecular Biology Basic Medicine
Research subject
Pharmaceutical Science
Identifiers
URN: urn:nbn:se:uu:diva-416506ISBN: 978-91-513-0980-4 (print)OAI: oai:DiVA.org:uu-416506DiVA, id: diva2:1455641
Public defence
2020-10-16, A1:107a, Biomedicinskt centrum (BMC), Husargatan 3, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2020-09-01 Created: 2020-07-27 Last updated: 2025-02-20Bibliographically approved
List of papers
1. Bridging the gap: The human and D. melanogaster repertoire of Solute Carriers
Open this publication in new window or tab >>Bridging the gap: The human and D. melanogaster repertoire of Solute Carriers
(English)In: Article in journal (Other academic) Submitted
National Category
Basic Medicine Evolutionary Biology
Identifiers
urn:nbn:se:uu:diva-416367 (URN)
Available from: 2020-07-16 Created: 2020-07-16 Last updated: 2020-07-27
2. Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster
Open this publication in new window or tab >>Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster
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2020 (English)In: Frontiers in Cell and Developmental Biology, E-ISSN 2296-634X, Vol. 8, article id 579Article in journal (Refereed) Published
Abstract [en]

Many newly identified solute carriers (SLCs) and putative transporters have the possibility to be intricately involved in glucose metabolism. Here we show that many transporters of this type display a high degree of regulation at both mRNA and protein level following no or low glucose availability in mouse cortex cultures. We show that this is also the case in Drosophila melanogaster subjected to starvation or diets with different sugar content. Interestingly, re-introduction of glucose to media, or refeeding flies, normalized the gene expression of a number of the targets, indicating a fast and highly dynamic control. Our findings demonstrate high conservation of these transporters and how dependent both cell cultures and organisms are on gene and protein regulation during metabolic fluctuations. Several transporter genes were regulated simultaneously maybe to initiate alternative metabolic pathways as a response to low glucose levels, both in the cell cultures and in D. melanogaster. Our results display that newly identified SLCs of Major Facilitator Superfamily type, as well as the putative transporters included in our study, are regulated by glucose availability and could be involved in several cellular aspects dependent of glucose and/or its metabolites. Recently, a correlation between dysregulation of glucose in the central nervous system and numerous diseases such as obesity, type 2 diabetes mellitus as well as neurological disease such as Alzheimer’s and Parkinson’s diseases indicate a complex regulation and fine tuning of glucose levels in the brain. The fact that almost one third of transporters and transporter-related proteins remain orphans with unknown or contradictive substrate profile, location and function, pinpoint the need for further research about them to fully understand their mechanistic role and their impact on cellular metabolism.

National Category
Cell and Molecular Biology Neurosciences Biochemistry Molecular Biology Cell Biology
Identifiers
urn:nbn:se:uu:diva-416363 (URN)10.3389/fcell.2020.00579 (DOI)000553395800001 ()32733888 (PubMedID)
Funder
Swedish Research Council, 2016-01972The Swedish Brain Foundation, FO2018-0130Swedish Society for Medical Research (SSMF), 201507Novo Nordisk, 34224Stiftelsen Olle Engkvist Byggmästare, 20160614Magnus Bergvall Foundation, 201601754
Available from: 2020-07-16 Created: 2020-07-16 Last updated: 2025-02-20Bibliographically approved
3. The Neuronal and Peripheral Expressed Membrane-Bound UNC93A Respond to Nutrient Availability in Mice
Open this publication in new window or tab >>The Neuronal and Peripheral Expressed Membrane-Bound UNC93A Respond to Nutrient Availability in Mice
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2017 (English)In: Frontiers in Molecular Neuroscience, ISSN 1662-5099, Vol. 10, article id 351Article in journal (Refereed) Published
Abstract [en]

Many transporters such as the solute carriers belonging to the Major facilitator superfamily Pfam clan are orphans in that their tissue and cellular localization as well as substrate profile and function are still unknown. Here we have characterized the putative solute carrier UNC93A. We aimed to investigate the expression profile on both protein and mRNA level of UNC93A in mouse since it has not been clarified. UNC93A staining was found in cortex, hippocampus and cerebellum. It was found to be expressed in many neurons, but not all, with staining located in close proximity to the plasma membrane. Furthermore, we aimed to extend the starvation data available for Unc93a in hypothalamic cell cultures from mouse. We investigated the Unc93a alterations with focus on amino acid deprivation in embryonic cortex cells from mice as well as 24 h starvation in adult male mice and compared it to recently studied putative and known solute carriers. Unc93a expression was found both in the brain and peripheral organs, in low to moderate levels in the adult mice and was affected by amino acid deprivation in embryonic cortex cultures and starvation in in vivo samples. In conclusion, the membrane-bound UNC93A is expressed in both the brain and peripheral tissues and responds to nutrient availability in mice.

Place, publisher, year, edition, pages
FRONTIERS MEDIA SA, 2017
Keywords
UNC93A, SLC, MFS, MFSD, transporter protein, starvation
National Category
Pharmaceutical Sciences
Identifiers
urn:nbn:se:uu:diva-340711 (URN)10.3389/fnmol.2017.00351 (DOI)000414018600001 ()29163028 (PubMedID)
Funder
Swedish Research Council
Available from: 2018-02-02 Created: 2018-02-02 Last updated: 2021-01-27Bibliographically approved
4. CG4928 is vital for renal function in fruit flies and membrane potential in cells: A first in-depth characterization of the putative Solute Carrier UNC93A
Open this publication in new window or tab >>CG4928 is vital for renal function in fruit flies and membrane potential in cells: A first in-depth characterization of the putative Solute Carrier UNC93A
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2020 (English)In: Frontiers in Cell and Developmental Biology, E-ISSN 2296-634X, Vol. 8, article id 580291Article in journal (Refereed) Published
Abstract [en]

The number of transporter proteins that are not fully characterized is immense. Here, we used Drosophila melanogaster and human cell lines to perform a first in-depth characterization of CG4928, an ortholog to the human UNC93A, of which little is known. Solute carriers regulate and maintain biochemical pathways important for the body, and malfunctioning transport is associated with multiple diseases. Based on phylogenetic analysis, CG4928 is closely related to human UNC93A and has a secondary and a tertiary protein structure and folding similar to major facilitator superfamily transporters. Ubiquitous knockdown of CG4928 causes flies to have a reduced secretion rate from the Malpighian tubules; altering potassium content in the body and in the Malpighian tubules, homologous to the renal system; and results in the development of edema. The edema could be rescued by using amiloride, a common diuretic, and by maintaining the flies on ion-free diets. CG4928-overexpressing cells did not facilitate the transport of sugars and amino acids; however, proximity ligation assay revealed that CG4928 co-localized with TASK(1) channels. Overexpression of CG4928 resulted in induced apoptosis and cytotoxicity, which could be restored when cells were kept in high-sodium media. Furthermore, the basal membrane potential was observed to be disrupted. Taken together, the results indicate that CG4928 is of importance for generating the cellular membrane potential by an unknown manner. However, we speculate that it most likely acts as a regulator or transporter of potassium flows over the membrane.

National Category
Cell and Molecular Biology
Identifiers
urn:nbn:se:uu:diva-416366 (URN)10.3389/fcell.2020.580291 (DOI)000582611200001 ()33163493 (PubMedID)
Funder
Swedish Research Council, 2016-01972The Swedish Brain Foundation, FO2018-0130Swedish Society for Medical Research (SSMF), 201507Novo Nordisk, 34224Stiftelsen Olle Engkvist Byggmästare, 20160614Magnus Bergvall Foundation, 201601754
Available from: 2020-07-16 Created: 2020-07-16 Last updated: 2020-11-17Bibliographically approved

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