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Deciphering Proteomic Expression in Inflammatory Disorders: A Mass Spectrometry Exploration Comparing Infectious, Noninfectious, and Traumatic Brain Injuries in Human Cerebrospinal Fluid
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Acquired brain injury.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Acquired brain injury. Univ Uppsala Hosp, Dept Neurosurg, Uppsala, Sweden.;Karolinska Inst, Dept Clin Neurosci, Stockholm, Sweden.;Univ Cambridge, Addenbrookes Hosp, Dept Clin Neurosci, Turku, Finland..ORCID iD: 0000-0003-4952-8597
Uppsala University, Disciplinary Domain of Science and Technology, Chemistry, Department of Chemistry - BMC, Analytical Chemistry.
Uppsala University, Disciplinary Domain of Medicine and Pharmacy, Faculty of Medicine, Department of Medical Sciences, Neurology. Uppsala Univ Hosp, Dept Neurol, Uppsala, Sweden..ORCID iD: 0000-0001-9901-2949
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2024 (English)In: Neurotrauma Reports, ISSN 2689-288X, Vol. 5, no 1, p. 857-873Article in journal (Refereed) Published
Abstract [en]

The central nervous system (CNS) evokes a complex inflammatory response to injury. Inflammatory cascades are present in traumatic, infectious, and noninfectious disorders affecting the brain. It contains a mixture of pro- andanti-inflammatory reactions involving well-known proteins, but also numerous proteins less explored in these processes. The aim of this study was to explore the distinct inflammatory response in traumatic brain injury (TBI)compared with other CNS injuries by utilization of mass-spectrometry. In total, 46 patients had their cerebrospinal fluid (CSF) analyzed with the use of mass-spectrometry. Among these, CSF was collected via an external ventricular drain (EVD) from n = 12 patients with acute TBI. The resulting protein findings were then compared with CSF obtained by lumbar puncture from n = 14 patients with noninfectious CNS disorders comprising relapsing–remitting multiple sclerosis, anti-N-methyl-D-aspartate-receptor encephalitis, acute disseminated encephalomyelitis, and n = 13 patients with progressive multifocal leukoencephalopathy, herpes simplex encephalitis, and other types ofviral meningitis. We also utilized n = 7 healthy controls (HC). In the comparison between TBI and noninfectious inflammatory CNS disorders, concentrations of 57 proteins significantly differed between the groups. Among them, 20 and 37 proteins were up- and downregulated, respectively. No proteins were uniquely identified in the TBI group. In the comparison of TBI and HC, 55 proteins were significantly different, with 24 and 31 proteins being up- and downregulated, respectively. Four proteins were uniquely identified in the TBI group, (FGG, HBA1, TKT,CA1). In the TBI versus infectious inflammatory CNS disorders, 57 proteins differed significantly between the groups, with 17 and 40 proteins being up- and down regulated, respectively. No proteins were uniquely identified in the TBI group. Due to large discrepancies between the groups compared, the following proteins were selected for further deeper analysis among those being differentially regulated: APOE, CFB, CHGA, CHI3L1, C3, FCGBP, FGA,GSN, IGFBP7, SERPINA3, SOD3, and TTR. We found distinct proteomic profiles in the CSF of TBI patients compared with HC and different disease controls, indicating a specific interplay between inflammatory factors, metabolic response, and cell integrity. In relation to primarily infectious or inflammatory disorders, unique inflammatory pathways seem to be engaged, and could potentially serve as future treatment targets.

Place, publisher, year, edition, pages
Mary Ann Liebert, 2024. Vol. 5, no 1, p. 857-873
Keywords [en]
central nervous system, encephalitis, fluidic protein biomarker, human studies, inflammation, mass-spectrometry, neurointensive care, traumatic brain injury
National Category
Neurology
Identifiers
URN: urn:nbn:se:uu:diva-539391DOI: 10.1089/neur.2024.0050ISI: 001316175100001PubMedID: 39391051Scopus ID: 2-s2.0-85204871830OAI: oai:DiVA.org:uu-539391DiVA, id: diva2:1909823
Available from: 2024-11-01 Created: 2024-11-01 Last updated: 2025-05-20Bibliographically approved
In thesis
1. Proteomic Profiling of Inflammation Following Traumatic Brain Injury and Cerebral Insults: Decoding Molecular Signatures for Therapeutic Insights
Open this publication in new window or tab >>Proteomic Profiling of Inflammation Following Traumatic Brain Injury and Cerebral Insults: Decoding Molecular Signatures for Therapeutic Insights
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Traumatic brain injury (TBI) is a complex and diverse condition influenced by various factors, all of which contribute to a wide range of outcomes for the patients. The initial injury renders the brain susceptible to secondary molecular and pathophysiological events, with neuroinflammation considered a crucial secondary mechanism. In this thesis, we investigated the inflammatory response following TBI and drew comparisons with central nervous system (CNS) inflammatory disorders. The aim was to identify distinct inflammatory responses specific to TBI pathology, ultimately contributing to precision medicine and advancing the development of individualized therapies.

We used cerebral microdialysis (CMD) and proximity extension assay (PEA) to analyze protein expressions in patients with acute severe TBI. Additionally, we conducted mass-spectrometry (MS) analysis on cerebrospinal fluid (CSF) collected from patients with TBI and individuals with various types of encephalitis.

Paper I - The PEA technique revealed the presence of inflammatory proteins in the brain interstitium during the initial days following severe TBI. Diverse temporal patterns were observed, with some proteins peaking early, others showing middle or late peaks, and some exhibiting biphasic or steady patterns. Notably, while these temporal patterns varied among proteins, unique and consistent patterns were discerned for the same proteins across different patients. Paper II - 21 proteins were selected for a customized panel to explore their temporal dynamics in patients suffering from acute TBI. This structured approach brought the method closer to clinical application and identified proteins of interest for monitoring in this patient group. Paper III - Patients had their CSF analyzed with the use of MS. The resulting protein findings from patients with acute severe TBI were then compared to findings from patients with non-infectious inflammatory CNS disorders, infectious inflammatory CNS disorders and controls. We found distinct proteomic profiles in the CSF of TBI patients compared with the healthy controls and different disease controls, indicating a specific interplay between inflammatory factors, metabolic response, and cell integrity. In relation to primarily infectious or inflammatory disorders, unique inflammatory pathways seem to be engaged and could potentially serve as future treatment targets. Paper IV - CSF from patients with acute severe TBI and COVID-19 patients with neurological symptoms were analysed using MS. Neurofilament light chain (NFL) levels were measured separately. Distinct inflammatory profiles in severe TBI and COVID-19 patients were identified. Elevated NFL levels in both groups indicated white matter injury. The discovery of novel biomarkers specific to each pathology, provide valuable insights into the inflammatory mechanisms and may serve as targets for therapeutic interventions. 

A more comprehensive understanding of the unique inflammatory response within the CNS following TBI could potentially reveal valuable therapeutic targets. By mapping specific molecular pathways, researchers can develop precise interventions and more effective treatments, tailored to the distinct challenges posed by different conditions.

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. p. 80
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Medicine, ISSN 1651-6206 ; 2106
Keywords
biomarkers; encephalitis; mass-spectrometry; microdialysis; neuroinflammation; neurointensive care; proteomics; proximity extension assay; traumatic brain
National Category
Neurosciences
Identifiers
urn:nbn:se:uu:diva-543424 (URN)978-91-513-2307-7 (ISBN)
Public defence
2025-09-05, H:son-Holmdahlsalen, Ingång 100, 2 tr., Akademiska sjukhuset, Uppsala, 09:00 (English)
Opponent
Supervisors
Available from: 2025-06-11 Created: 2024-11-20 Last updated: 2025-06-11

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Dyhrfort, PhilipLindblad, CarolineWidgren, AnnaVirhammar, JohanBergquist, JonasRostami, Elham

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