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Benchmarking computational methods for the optimisation of aryne and cycloalkyne geometries
(English)Manuscript (preprint) (Other academic)
Abstract [en]

The geometric distortion of the triple bond in arynes and cycloalkynes can be used to predict the regioselectivity of capture reactions. Published distortion values are commonly not comparable, as different computational methods have been used. Different computation methods were benchmarked. It was found that PBEh-3c was accurately able to compute aryne and cycloalkyne    geometries at lower cost than B3LYP/6-31G(d). Solvent models were shown to significantly affect computed computed geometries. A general framework for how to report aryne distortions was proposed. Lastly, the properties of cyclopentyne and benzyne was studied using CCSD(T).

National Category
Theoretical Chemistry Organic Chemistry
Research subject
Chemistry with specialization in Organic Chemistry
Identifiers
URN: urn:nbn:se:uu:diva-572863OAI: oai:DiVA.org:uu-572863DiVA, id: diva2:2019790
Available from: 2025-12-08 Created: 2025-12-08 Last updated: 2025-12-09
In thesis
1. Expanding the aryne toolbox: Studies of aryne regioselectivity and precursor post-functionalisation
Open this publication in new window or tab >>Expanding the aryne toolbox: Studies of aryne regioselectivity and precursor post-functionalisation
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

This thesis explores aryne chemistry in two directions, the post-functionalisation of Kobayashi's precursor to prepare novel aryne precursors, and the study of the regioselectivity of aryne capture reactions. The goal was to extend the understanding of aryne regioselectivity, and to open up new avenues for future applications of aryne chemistry.

The crystal structures of several distally borylated Kobayashi's precursors are presented (Paper I). After that, the thesis covers the interaction between the arynes resulting from distally borylated Kobayashi precursors and their boron, demonstrating the unprecedented regioselectivity of capture reactions with these arynes (Paper II). Distally borylated Kobayashi's precursor was converted to an iodonium salt to prepare the first chemoselective formal benzdiyne precursor (Paper III). An iodonium-based aryne precursor was installed in 2,1,3-benzothiadiazole to prepare the novel heteroaryne 4,5-benzothiadiazolyne (Paper IV). Lastly, methods for the optimisation of aryne and cycloalkyne geometries were benchmarked (Paper V). It was found that PBEh-3c offered an excellent performance-to-cost ratio. The largest ever library of aryne and cycloalkyne geometries was prepared. The library was then analysed in the first extensive study of structure-distortion relationships of substituted arynes and cycloalkynes (Paper VI).

Place, publisher, year, edition, pages
Uppsala: Acta Universitatis Upsaliensis, 2025. p. 115
Series
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology, ISSN 1651-6214 ; 2626
Keywords
Benzyne, arynes, regioselectivity, aryne distortion, benzdiyne, bond angle distortion, cycloalkynes
National Category
Organic Chemistry Theoretical Chemistry
Research subject
Chemistry with specialization in Organic Chemistry
Identifiers
urn:nbn:se:uu:diva-573028 (URN)978-91-513-2702-0 (ISBN)
Public defence
2026-02-20, BMC A1:111a, Husargatan 3, Uppsala, 09:15 (English)
Opponent
Supervisors
Available from: 2026-01-22 Created: 2025-12-09 Last updated: 2026-01-22

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Barnå, FredrikPilarski, Lukasz T.

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CiteExportLink to record
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